RchiOBHm_Chr6g0295471

Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0016762
Physical Location & Seq
Reverse (-)
57470839 .. 57472314
1476 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 987 bp
ATGAAAACCAATAACATCAATTTGATCTTATTGGTCTGTATAGTTGTTTGCATTAATCTAGGGGGTTGCTTAGGTGGTAGCCTGAGGAAAGGTTTCTACAAACAAACATGTCCTCTAGCAGAGCAGATTGTCAAGAACGCCACGTGGAACCACGTCTCCGCCAATCCCAACTTGCCAGCAAAGTTGCTGAGGATGCATTTCCATGACTGTTTTGTAAGGGGATGCGAGGCCTCGGTTTTGTTGAGCTCTTCAGCAAATAACACTGCAGAGAGGGATTCGTTCCCAAACTCTTCTTTGGAGGGTTTTGATGTTATTGATGATATAAAAGAACAGTTAGAGAAGGCATGCCCAGGAGTTGTATCTTGTGCTGATATTCTTGCGTTGGCGACTAGGGATTCTATGTCATTCCAATTCAAGAAATCACTATGGGATGTTCTTACCGGTAGACGAGATGGCACTGTTTCAATAGCAAATGAGGTCTTACGTAACCTTCCAGCTCCTTTCTTCAACTTCACTCAACTCAAACAAAGTTTTGCAAATAGAGGTCTCACTGTGCAAGATCTTGTGGTACTGTCAGGTGGACACAGCATTGGCGTTGGGCATTGCAATTTATTCAGCAACCGGCTCTACAACTTCACCGGAAAAGGAGATCAAGACCCGTCTTTGGACTCCACATATGCTGCCTTGTTGAAGACCCAATGCCAAGGCCCTCGTGACACAACCACTGCTGTAGAACTAGACCCTGGAAGCTTTCAAAAGTTTGACAATCACTACTACACAAACCTTAAGCAGAATAAGGGTCTCTTCCAATCCGACGCTGCTCTTCTAACAAACAAAGTCTCAAGCAATGCTGTTCAGAAATTGCTCAAGGCAAATGATTTCTTCACGGAGTTCGGTCAGTCTATGAAGAGGATGGGAGCAATTGGGGTCCTTACGGGCACATCTGGGCAGATTAGGAAGCAGTGTGGGGTTGTAAATTCAAACTAA

Protein Analysis

328

Amino Acids

35.8

Weight (kDa)

8.72

Isoelectric Point (pI)

38.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 44 - 288 1.1e-82 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016762)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g26620
malus_domestica MD03G1274400.v1.1 MD03G1274500.v1.1
prunus_persica Prupe.8G251100_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0295471
rosa_laevigata RLG00000011798
rosa_multiflora Rmu_co8105696.1_g000001 Rmu_ssc0000464.1_g000001
rosa_rugosa Rorug06G0251200
rosa_samantha Rh6AG364400 Rh6BG372700 Rh6CG379000 Rh6DG365400
rosa_wichuraiana Rw6G031820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 445
AciI CCGC 1 cut(s) 159
AcsI RAATTY 1 cut(s) 976
AcuI CTGAAG 1 cut(s) 234
AcvI CACGTG 1 cut(s) 144
AfaI GTAC 1 cut(s) 570
AfiI CCNNNNNNNGG 1 cut(s) 664
AflII CTTAAG 1 cut(s) 785
AflIII ACRYGT 1 cut(s) 107
AgeI ACCGGT 1 cut(s) 440
AgsI TTSAA 6 cut(s) 415, 465, 508, 691, 755, 981
AjiI CACGTC 1 cut(s) 154
AjnI CCWGG 2 cut(s) 349, 742
AloI GAACNNNNNNTCC 2 cut(s) 140, 172
AluBI AGCT 3 cut(s) 246, 497, 750
AluI AGCT 3 cut(s) 246, 497, 750
Alw21I GWGCWC 1 cut(s) 248
Alw26I GTCTC 4 cut(s) 160, 551, 806, 844
AoxI GGCC 2 cut(s) 228, 706
ApeKI GCWGC 2 cut(s) 680, 818
ApoI RAATTY 1 cut(s) 976
AseI ATTAAT 1 cut(s) 54
AsiGI ACCGGT 1 cut(s) 440
Asp700I GAANNNNTTC 1 cut(s) 92
AspS9I GGNCC 2 cut(s) 707, 928
AsuHPI GGTGA 1 cut(s) 628
AvaII GGWCC 1 cut(s) 928
AxyI CCTNAGG 1 cut(s) 83
BaeGI GKGCMC 1 cut(s) 941
BanII GRGCYC 1 cut(s) 248
BauI CACGAG 1 cut(s) 711
BbrPI CACGTG 1 cut(s) 144
BbsI GAAGAC 1 cut(s) 698
Bbv12I GWGCWC 1 cut(s) 248
BbvCI CCTCAGC 1 cut(s) 188
BbvI GCAGC 2 cut(s) 667, 805
BccI CCATC 2 cut(s) 446, 907
BciT130I CCWGG 2 cut(s) 351, 744
BcoDI GTCTC 4 cut(s) 160, 551, 806, 844
BfaI CTAG 4 cut(s) 59, 116, 390, 737
BfmI CTRYAG 2 cut(s) 264, 729
BfrI CTTAAG 1 cut(s) 785
BglII AGATCT 1 cut(s) 559
BisI GCNGC 2 cut(s) 681, 819
BlsI GCNGC 2 cut(s) 682, 820
Bme1390I CCNGG 2 cut(s) 351, 744
Bme18I GGWCC 1 cut(s) 928
BmgBI CACGTC 1 cut(s) 154
BmgT120I GGNCC 2 cut(s) 707, 928
BmiI GGNNCC 2 cut(s) 149, 929
BmrFI CCNGG 2 cut(s) 351, 744
BmsI GCATC 2 cut(s) 183, 212
BpiI GAAGAC 1 cut(s) 698
Bpu10I CCTNAGC 2 cut(s) 70, 188
BpuEI CTTGAG 2 cut(s) 826, 851
BsaAI YACGTR 2 cut(s) 144, 485
BsaI GGTCTC 2 cut(s) 551, 806
BsaJI CCNNGG 4 cut(s) 231, 349, 703, 742
BsaWI WCCGGW 2 cut(s) 440, 638
BsaXI ACNNNNNCTCC 2 cut(s) 140, 170
Bsc4I CCNNNNNNNGG 1 cut(s) 664
Bse118I RCCGGY 2 cut(s) 440, 621
Bse21I CCTNAGG 1 cut(s) 83
Bse3DI GCAATG 2 cut(s) 601, 853
BseBI CCWGG 2 cut(s) 351, 744
BseDI CCNNGG 4 cut(s) 231, 349, 703, 742
BseGI GGATG 4 cut(s) 198, 227, 436, 918
BseLI CCNNNNNNNGG 1 cut(s) 664
BseMI GCAATG 2 cut(s) 601, 853
BseMII CTCAG 2 cut(s) 74, 179
BseSI GKGCMC 1 cut(s) 941
BseXI GCAGC 2 cut(s) 667, 805
BshFI GGCC 2 cut(s) 230, 708
BshTI ACCGGT 1 cut(s) 440
BsiHKAI GWGCWC 1 cut(s) 248
BsiSI CCGG 3 cut(s) 441, 622, 639
BslI CCNNNNNNNGG 1 cut(s) 664
BsmAI GTCTC 4 cut(s) 160, 551, 806, 844
BsmBI CGTCTC 1 cut(s) 160
BsnI GGCC 2 cut(s) 230, 708
Bso31I GGTCTC 2 cut(s) 551, 806
Bsp1286I GDGCHC 2 cut(s) 248, 941
Bsp143I GATC 3 cut(s) 24, 559, 649
BspACI CCGC 1 cut(s) 159
BspANI GGCC 2 cut(s) 230, 708
BspCNI CTCAG 2 cut(s) 75, 180
BspLI GGNNCC 2 cut(s) 149, 929
BspMAI CTGCAG 1 cut(s) 268
BspQI GCTCTTC 2 cut(s) 253, 828
BspTI CTTAAG 1 cut(s) 785
BspTNI GGTCTC 2 cut(s) 551, 806
BsrDI GCAATG 2 cut(s) 601, 853
BsrFI RCCGGY 2 cut(s) 440, 621
BssAI RCCGGY 2 cut(s) 440, 621
BssECI CCNNGG 4 cut(s) 231, 349, 703, 742
BssMI GATC 3 cut(s) 24, 559, 649
BssSI CACGAG 1 cut(s) 711
BssT1I CCWWGG 1 cut(s) 703
Bst2BI CACGAG 1 cut(s) 711
Bst2UI CCWGG 2 cut(s) 351, 744
Bst4CI ACNGT 5 cut(s) 209, 333, 460, 553, 573
Bst6I CTCTTC 5 cut(s) 253, 295, 809, 828, 902
BstAFI CTTAAG 1 cut(s) 785
BstBAI YACGTR 2 cut(s) 144, 485
BstC8I GCNNGC 2 cut(s) 177, 346
BstDEI CTNAG 3 cut(s) 70, 83, 188
BstF5I GGATG 4 cut(s) 198, 227, 436, 918
BstKTI GATC 3 cut(s) 27, 562, 652
BstMAI GTCTC 4 cut(s) 160, 551, 806, 844
BstMBI GATC 3 cut(s) 24, 559, 649
BstMWI GCNNNNNNNGC 1 cut(s) 193
BstNI CCWGG 2 cut(s) 351, 744
BstNSI RCATGY 2 cut(s) 111, 348
BstSCI CCNGG 2 cut(s) 349, 742
BstSFI CTRYAG 2 cut(s) 264, 729
BstSLI GKGCMC 1 cut(s) 941
BstSNI TACGTA 1 cut(s) 485
BstV1I GCAGC 2 cut(s) 667, 805
BstV2I GAAGAC 1 cut(s) 698
BstX2I RGATCY 1 cut(s) 559
BstYI RGATCY 1 cut(s) 559
Bsu36I CCTNAGG 1 cut(s) 83
BsuRI GGCC 2 cut(s) 230, 708
BtrI CACGTC 1 cut(s) 154
BtsCI GGATG 4 cut(s) 198, 227, 436, 918
BtsI GCAGTG 3 cut(s) 261, 723, 968
BtsIMutI CAGTG 5 cut(s) 261, 456, 549, 723, 968
Cac8I GCNNGC 2 cut(s) 177, 346
Cfr10I RCCGGY 2 cut(s) 440, 621
Cfr13I GGNCC 2 cut(s) 707, 928
CseI GACGC 1 cut(s) 824
Csp6I GTAC 1 cut(s) 569
CspAI ACCGGT 1 cut(s) 440
CviAII CATG 3 cut(s) 108, 203, 345
CviJI RGCY 7 cut(s) 81, 230, 246, 497, 625, 708, 750
CviKI_1 RGCY 7 cut(s) 81, 230, 246, 497, 625, 708, 750
CviQI GTAC 1 cut(s) 569
DdeI CTNAG 3 cut(s) 70, 83, 188
DpnI GATC 3 cut(s) 26, 561, 651
DpnII GATC 3 cut(s) 24, 559, 649
Eam1104I CTCTTC 5 cut(s) 253, 295, 809, 828, 902
EarI CTCTTC 5 cut(s) 253, 295, 809, 828, 902
EciI GGCGGA 1 cut(s) 148
Ecl136II GAGCTC 1 cut(s) 246
Eco105I TACGTA 1 cut(s) 485
Eco130I CCWWGG 1 cut(s) 703
Eco147I AGGCCT 1 cut(s) 230
Eco24I GRGCYC 1 cut(s) 248
Eco31I GGTCTC 2 cut(s) 551, 806
Eco47I GGWCC 1 cut(s) 928
Eco53kI GAGCTC 1 cut(s) 246
Eco57I CTGAAG 1 cut(s) 234
Eco72I CACGTG 1 cut(s) 144
Eco81I CCTNAGG 1 cut(s) 83
EcoICRI GAGCTC 1 cut(s) 246
EcoO109I RGGNCCY 2 cut(s) 707, 928
EcoRII CCWGG 2 cut(s) 349, 742
EcoT14I CCWWGG 1 cut(s) 703
EcoT22I ATGCAT 1 cut(s) 198
EcoT38I GRGCYC 1 cut(s) 248
ErhI CCWWGG 1 cut(s) 703
Esp3I CGTCTC 1 cut(s) 160
FaeI CATG 3 cut(s) 111, 206, 348
FalI AAGNNNNNCTT 2 cut(s) 788, 820
FatI CATG 3 cut(s) 107, 202, 344
FauNDI CATATG 1 cut(s) 676
FblI GTMKAC 1 cut(s) 445
Fnu4HI GCNGC 2 cut(s) 681, 819
FokI GGATG 4 cut(s) 205, 234, 443, 925
FriOI GRGCYC 1 cut(s) 248
Fsp4HI GCNGC 2 cut(s) 681, 819
FspBI CTAG 4 cut(s) 59, 116, 390, 737
GluI GCNGC 2 cut(s) 681, 819
HaeIII GGCC 2 cut(s) 230, 708
HapII CCGG 3 cut(s) 441, 622, 639
HgaI GACGC 1 cut(s) 824
Hin1II CATG 3 cut(s) 111, 206, 348
HindIII AAGCTT 1 cut(s) 748
HinfI GANTC 3 cut(s) 275, 395, 668
HpaII CCGG 3 cut(s) 441, 622, 639
HphI GGTGA 1 cut(s) 628
Hpy166II GTNNAC 2 cut(s) 446, 581
Hpy188I TCNGA 2 cut(s) 814, 858
Hpy188III TCNNGA 4 cut(s) 133, 415, 653, 713
Hpy8I GTNNAC 2 cut(s) 446, 581
Hpy99I CGWCG 1 cut(s) 818
HpyAV CCTTC 2 cut(s) 334, 500
HpyCH4III ACNGT 5 cut(s) 209, 333, 460, 553, 573
HpyCH4IV ACGT 3 cut(s) 143, 153, 484
HpyCH4V TGCA 6 cut(s) 51, 196, 266, 536, 556, 606
HpyF10VI GCNNNNNNNGC 1 cut(s) 193
HpyF3I CTNAG 3 cut(s) 70, 83, 188
HpySE526I ACGT 3 cut(s) 143, 153, 484
Hsp92II CATG 3 cut(s) 111, 206, 348
Kzo9I GATC 3 cut(s) 24, 559, 649
LguI GCTCTTC 2 cut(s) 253, 828
LmnI GCTCC 2 cut(s) 502, 917
Lsp1109I GCAGC 2 cut(s) 667, 805
LweI GCATC 2 cut(s) 183, 212
MaeI CTAG 4 cut(s) 59, 116, 390, 737
MaeII ACGT 3 cut(s) 143, 153, 484
MaeIII GTNAC 2 cut(s) 485, 713
MalI GATC 3 cut(s) 26, 561, 651
MboI GATC 3 cut(s) 24, 559, 649
MboII GAAGA 8 cut(s) 240, 282, 496, 703, 796, 815, 874, 919
MfeI CAATTG 1 cut(s) 921
MflI RGATCY 1 cut(s) 559
MhlI GDGCHC 2 cut(s) 248, 941
MluCI AATT 6 cut(s) 19, 410, 607, 860, 921, 976
MlyI GAGTC 1 cut(s) 662
MmeI TCCRAC 1 cut(s) 837
Mph1103I ATGCAT 1 cut(s) 198
MroXI GAANNNNTTC 1 cut(s) 92
MseI TTAA 2 cut(s) 54, 786
MslI CAYNNNNRTG 1 cut(s) 201
MspCI CTTAAG 1 cut(s) 785
MspI CCGG 3 cut(s) 441, 622, 639
MspR9I CCNGG 2 cut(s) 351, 744
MunI CAATTG 1 cut(s) 921
MvaI CCWGG 2 cut(s) 351, 744
MwoI GCNNNNNNNGC 1 cut(s) 193
NdeI CATATG 1 cut(s) 676
NdeII GATC 3 cut(s) 24, 559, 649
NlaIII CATG 3 cut(s) 111, 206, 348
NlaIV GGNNCC 2 cut(s) 149, 929
NmuCI GTSAC 1 cut(s) 713
NsiI ATGCAT 1 cut(s) 198
NspI RCATGY 2 cut(s) 111, 348
PaeI GCATGC 1 cut(s) 348
PceI AGGCCT 1 cut(s) 230
PciI ACATGT 1 cut(s) 107
PciSI GCTCTTC 2 cut(s) 253, 828
PdmI GAANNNNTTC 1 cut(s) 92
PfeI GAWTC 2 cut(s) 275, 395
PinAI ACCGGT 1 cut(s) 440
PkrI GCNGC 2 cut(s) 682, 820
PleI GAGTC 1 cut(s) 662
PmaCI CACGTG 1 cut(s) 144
PmlI CACGTG 1 cut(s) 144
PpsI GAGTC 1 cut(s) 662
Ppu21I YACGTR 2 cut(s) 144, 485
PpuMI RGGWCCY 1 cut(s) 928
PscI ACATGT 1 cut(s) 107
PshBI ATTAAT 1 cut(s) 54
Psp124BI GAGCTC 1 cut(s) 248
Psp5II RGGWCCY 1 cut(s) 928
Psp6I CCWGG 2 cut(s) 349, 742
PspCI CACGTG 1 cut(s) 144
PspGI CCWGG 2 cut(s) 349, 742
PspN4I GGNNCC 2 cut(s) 149, 929
PspPI GGNCC 2 cut(s) 707, 928
PspPPI RGGWCCY 1 cut(s) 928
PstI CTGCAG 1 cut(s) 268
PsuI RGATCY 1 cut(s) 559
RsaI GTAC 1 cut(s) 570
RsaNI GTAC 1 cut(s) 569
RseI CAYNNNNRTG 1 cut(s) 201
SacI GAGCTC 1 cut(s) 248
SapI GCTCTTC 2 cut(s) 253, 828
SaqAI TTAA 2 cut(s) 54, 786
SatI GCNGC 2 cut(s) 681, 819
Sau3AI GATC 3 cut(s) 24, 559, 649
Sau96I GGNCC 2 cut(s) 707, 928
SchI GAGTC 1 cut(s) 662
ScrFI CCNGG 2 cut(s) 351, 744
SduI GDGCHC 2 cut(s) 248, 941
SfaNI GCATC 2 cut(s) 183, 212
SfcI CTRYAG 2 cut(s) 264, 729
SinI GGWCC 1 cut(s) 928
SmiMI CAYNNNNRTG 1 cut(s) 201
SmlI CTYRAG 3 cut(s) 785, 841, 866
SmoI CTYRAG 3 cut(s) 785, 841, 866
SnaBI TACGTA 1 cut(s) 485
SphI GCATGC 1 cut(s) 348
Sse9I AATT 6 cut(s) 19, 410, 607, 860, 921, 976
SseBI AGGCCT 1 cut(s) 230
SsiI CCGC 1 cut(s) 159
SspMI CTAG 4 cut(s) 59, 116, 390, 737
SstI GAGCTC 1 cut(s) 248
StuI AGGCCT 1 cut(s) 230
StyD4I CCNGG 2 cut(s) 349, 742
StyI CCWWGG 1 cut(s) 703
TaaI ACNGT 5 cut(s) 209, 333, 460, 553, 573
TaiI ACGT 3 cut(s) 146, 156, 487
TaqII GACCGA 1 cut(s) 884
TasI AATT 6 cut(s) 19, 410, 607, 860, 921, 976
TfiI GAWTC 2 cut(s) 275, 395
Tru1I TTAA 2 cut(s) 54, 786
Tru9I TTAA 2 cut(s) 54, 786
TscAI CASTG 5 cut(s) 268, 463, 556, 730, 968
TseFI GTSAC 1 cut(s) 713
TseI GCWGC 2 cut(s) 680, 818
Tsp45I GTSAC 1 cut(s) 713
TspDTI ATGAA 2 cut(s) 17, 920
TspGWI ACGGA 1 cut(s) 902
TspRI CASTG 5 cut(s) 268, 463, 556, 730, 968
Vha464I CTTAAG 1 cut(s) 785
VpaK11BI GGWCC 1 cut(s) 928
VspI ATTAAT 1 cut(s) 54
XapI RAATTY 1 cut(s) 976
XceI RCATGY 2 cut(s) 111, 348
XmiI GTMKAC 1 cut(s) 445
XmnI GAANNNNTTC 1 cut(s) 92
XspI CTAG 4 cut(s) 59, 116, 390, 737
Zsp2I ATGCAT 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.