RchiOBHm_Chr6g0299781

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0018390
Physical Location & Seq
Reverse (-)
60816043 .. 60817179
1137 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1137 bp
ATGGCAGAGGGTGAGGGCGATGACCTTGTAGATGATGTTGTAGAAATAATCATACTCAAGTTGCCCTTGAAATCTATACTGAAATTTCGATGCGTCTCAAAAAAATTGAGCTGTAGAATCTCTGACTATAGATTCTCCCGAAGGCACTATAAATTAGCGCGTTGCCAGAAAACTGTGAATCACAGGCTCATCATCATCTCCTCATCTCAAATGGAATCCTTGGACCTCCAGGCGAAGTCATCATCAATTAGAAAGCTTACCTGCCCATTCTTGGAACTCGAGCAATGGCGGTTTCTTCAAGTCACGCTACTGGTCTCTAGTAGTGGTTTGGTATGTGCAAGTCTCGATCCTCATAAAAACTTCATCTTATGGAATCCATCAACCACTTTCTTCAGCAAATTACCCGACCCAGATCTTGGTGGTTATTTTTCAGAGGAAGAAGCAGAAGAAGTTGAGTTTAGTGTTTATCACTACGGCTTTGGTTGTGTGTCGGCTACTGACGACTATAAACTTTTGATATGGTTTCGGATTAACTCTGATTTCGAGGAGCTCTTAATATTCTCATGGAAGAATCAAATTTGGAGAGCCATTTCCGGTGCCCCAAAGTGGATCAACCGCATAACCCAAAGTCAGGGGGCTCTTTCAAATGAAAAACTTCACTGGCACTTCGATCAGAATAATGGGCTCTATGAATCACATGAGGAGGAAGATTGCATCCTTACTTTTGATCTGGAAAATGAGGAGTTTGGAAAACTTTCGCTGCCTGATTTTGATGATAATGATGATCATCTAGAGTATGCTAATCTTTTGGGGGTCTCCTGTGAAGGATGCCTATACGTGTTGCATCATATGGAGGACTGGTTCTCTAGTATGACATCTGCTAGTATTTGGTACATGAAAGAATATGGGGTGACTGACTCGTGGAGTAAGCTCTTTGATTTAAAGATTTCCCATGAGCCTCTTGAGCCGATAACTTGTCTCGGTCCAATCTTTTTCATGGAGAAATCATCAGCCTATGGCTATGGGAACAAGTTCACAGAGATCAAGTATCAGCATCAGCCTCAGCCTCACATAGATTTGCTGAAGCGAGAAAACCTACTTGACATGATTGTATGTGAAGAGACTCTGTCTCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

378

Amino Acids

43.96

Weight (kDa)

5.03

Isoelectric Point (pI)

44.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 64 - 310 2e-08 F-box associated beta propeller domain
FBA_1 PF07734 67 - 335 1.3e-18 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018390)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g40801
rosa_chinensis RchiOBHm_Chr6g0299781
rosa_laevigata RLG00000011388 RLG00000011389
rosa_multiflora Rmu_ssc0000158.1_g000002 Rmu_ssc0000158.1_g000003
rosa_roxburghii Rroxscaffold_7G00168380
rosa_rugosa Rorug06G0292200
rosa_samantha Rh6CG417800
rosa_wichuraiana Rw6G035290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 269
AccB1I GGYRCC 1 cut(s) 596
AccB7I CCANNNNNTGG 1 cut(s) 416
AccII CGCG 1 cut(s) 160
AciI CCGC 2 cut(s) 289, 616
AclWI GGATC 2 cut(s) 341, 617
AcsI RAATTY 2 cut(s) 83, 576
AcuI CTGAAG 2 cut(s) 376, 1103
AfaI GTAC 1 cut(s) 893
AfiI CCNNNNNNNGG 4 cut(s) 271, 416, 606, 631
AflIII ACRYGT 1 cut(s) 837
AgsI TTSAA 3 cut(s) 70, 299, 645
AjnI CCWGG 1 cut(s) 228
AloI GAACNNNNNNTCC 2 cut(s) 845, 877
AluBI AGCT 4 cut(s) 111, 256, 550, 931
AluI AGCT 4 cut(s) 111, 256, 550, 931
Alw21I GWGCWC 1 cut(s) 552
Alw26I GTCTC 6 cut(s) 100, 319, 347, 820, 983, 1115
AlwI GGATC 2 cut(s) 341, 617
Ama87I CYCGRG 1 cut(s) 278
ApeKI GCWGC 1 cut(s) 760
ApoI RAATTY 2 cut(s) 83, 576
Asp700I GAANNNNTTC 3 cut(s) 654, 754, 1031
AspLEI GCGC 1 cut(s) 160
AspS9I GGNCC 2 cut(s) 223, 983
AsuHPI GGTGA 2 cut(s) 23, 922
AvaI CYCGRG 1 cut(s) 278
AvaII GGWCC 2 cut(s) 223, 983
BaeGI GKGCMC 1 cut(s) 601
BanI GGYRCC 1 cut(s) 596
BanII GRGCYC 3 cut(s) 552, 640, 687
BauI CACGAG 1 cut(s) 919
Bbv12I GWGCWC 1 cut(s) 552
BbvCI CCTCAGC 1 cut(s) 1062
BbvI GCAGC 1 cut(s) 747
BccI CCATC 1 cut(s) 385
BceAI ACGGC 1 cut(s) 490
BciT130I CCWGG 1 cut(s) 230
BclI TGATCA 1 cut(s) 784
BcoDI GTCTC 6 cut(s) 100, 319, 347, 820, 983, 1115
BfaI CTAG 4 cut(s) 318, 791, 867, 882
BfmI CTRYAG 2 cut(s) 112, 127
BfuAI ACCTGC 1 cut(s) 269
BglII AGATCT 1 cut(s) 412
BisI GCNGC 1 cut(s) 761
BlsI GCNGC 1 cut(s) 762
Bme1390I CCNGG 1 cut(s) 230
Bme18I GGWCC 2 cut(s) 223, 983
BmeT110I CYCGRG 1 cut(s) 278
BmgT120I GGNCC 2 cut(s) 223, 983
BmiI GGNNCC 1 cut(s) 598
BmrFI CCNGG 1 cut(s) 230
BmsI GCATC 5 cut(s) 80, 723, 818, 853, 1063
BpmI CTGGAG 1 cut(s) 212
Bpu10I CCTNAGC 1 cut(s) 1062
BpuEI CTTGAG 2 cut(s) 41, 983
BsaAI YACGTR 1 cut(s) 838
BsaBI GATNNNNATC 1 cut(s) 786
BsaI GGTCTC 2 cut(s) 319, 820
BsaJI CCNNGG 1 cut(s) 219
BsaWI WCCGGW 1 cut(s) 593
BsaXI ACNNNNNCTCC 2 cut(s) 845, 875
Bsc4I CCNNNNNNNGG 4 cut(s) 271, 416, 606, 631
Bse1I ACTGG 3 cut(s) 315, 665, 863
Bse3DI GCAATG 1 cut(s) 290
Bse8I GATNNNNATC 1 cut(s) 786
BseBI CCWGG 1 cut(s) 230
BseDI CCNNGG 1 cut(s) 219
BseGI GGATG 2 cut(s) 714, 833
BseJI GATNNNNATC 1 cut(s) 786
BseLI CCNNNNNNNGG 4 cut(s) 271, 416, 606, 631
BseMI GCAATG 1 cut(s) 290
BseMII CTCAG 1 cut(s) 1076
BseNI ACTGG 3 cut(s) 315, 665, 863
BseRI GAGGAG 4 cut(s) 190, 560, 716, 755
BseSI GKGCMC 1 cut(s) 601
BseXI GCAGC 1 cut(s) 747
Bsh1236I CGCG 1 cut(s) 160
BshNI GGYRCC 1 cut(s) 596
BsiHKAI GWGCWC 1 cut(s) 552
BsiHKCI CYCGRG 1 cut(s) 278
BsiSI CCGG 1 cut(s) 594
BslI CCNNNNNNNGG 4 cut(s) 271, 416, 606, 631
BsmAI GTCTC 6 cut(s) 100, 319, 347, 820, 983, 1115
BsmBI CGTCTC 1 cut(s) 100
Bso31I GGTCTC 2 cut(s) 319, 820
BsoBI CYCGRG 1 cut(s) 278
Bsp1286I GDGCHC 4 cut(s) 552, 601, 640, 687
Bsp143I GATC 7 cut(s) 346, 412, 609, 670, 727, 784, 1041
BspACI CCGC 2 cut(s) 289, 616
BspCNI CTCAG 1 cut(s) 1075
BspFNI CGCG 1 cut(s) 160
BspLI GGNNCC 1 cut(s) 598
BspMI ACCTGC 1 cut(s) 269
BspPI GGATC 2 cut(s) 341, 617
BspT107I GGYRCC 1 cut(s) 596
BspTNI GGTCTC 2 cut(s) 319, 820
BsrDI GCAATG 1 cut(s) 290
BsrI ACTGG 3 cut(s) 315, 665, 863
BssECI CCNNGG 1 cut(s) 219
BssMI GATC 7 cut(s) 346, 412, 609, 670, 727, 784, 1041
BssSI CACGAG 1 cut(s) 919
BssT1I CCWWGG 1 cut(s) 219
Bst2BI CACGAG 1 cut(s) 919
Bst2UI CCWGG 1 cut(s) 230
Bst4CI ACNGT 1 cut(s) 175
Bst6I CTCTTC 1 cut(s) 1113
BstBAI YACGTR 1 cut(s) 838
BstDEI CTNAG 1 cut(s) 1062
BstF5I GGATG 2 cut(s) 714, 833
BstFNI CGCG 1 cut(s) 160
BstHHI GCGC 1 cut(s) 160
BstKTI GATC 7 cut(s) 349, 415, 612, 673, 730, 787, 1044
BstMAI GTCTC 6 cut(s) 100, 319, 347, 820, 983, 1115
BstMBI GATC 7 cut(s) 346, 412, 609, 670, 727, 784, 1041
BstMWI GCNNNNNNNGC 1 cut(s) 964
BstNI CCWGG 1 cut(s) 230
BstSCI CCNGG 1 cut(s) 228
BstSFI CTRYAG 2 cut(s) 112, 127
BstSLI GKGCMC 1 cut(s) 601
BstUI CGCG 1 cut(s) 160
BstV1I GCAGC 1 cut(s) 747
BstX2I RGATCY 1 cut(s) 412
BstYI RGATCY 1 cut(s) 412
BtgZI GCGATG 1 cut(s) 33
BtsCI GGATG 2 cut(s) 714, 833
BtsIMutI CAGTG 1 cut(s) 658
BveI ACCTGC 1 cut(s) 269
CfoI GCGC 1 cut(s) 160
Cfr13I GGNCC 2 cut(s) 223, 983
CseI GACGC 1 cut(s) 82
Csp6I GTAC 1 cut(s) 892
CviAII CATG 6 cut(s) 564, 698, 895, 953, 997, 1105
CviQI GTAC 1 cut(s) 892
DdeI CTNAG 1 cut(s) 1062
DpnI GATC 7 cut(s) 348, 414, 611, 672, 729, 786, 1043
DpnII GATC 7 cut(s) 346, 412, 609, 670, 727, 784, 1041
DraI TTTAAA 1 cut(s) 942
Eam1104I CTCTTC 1 cut(s) 1113
EarI CTCTTC 1 cut(s) 1113
Ecl136II GAGCTC 1 cut(s) 550
Eco130I CCWWGG 1 cut(s) 219
Eco24I GRGCYC 3 cut(s) 552, 640, 687
Eco31I GGTCTC 2 cut(s) 319, 820
Eco47I GGWCC 2 cut(s) 223, 983
Eco53kI GAGCTC 1 cut(s) 550
Eco57I CTGAAG 2 cut(s) 376, 1103
Eco88I CYCGRG 1 cut(s) 278
EcoICRI GAGCTC 1 cut(s) 550
EcoRII CCWGG 1 cut(s) 228
EcoT14I CCWWGG 1 cut(s) 219
EcoT38I GRGCYC 3 cut(s) 552, 640, 687
ErhI CCWWGG 1 cut(s) 219
Esp3I CGTCTC 1 cut(s) 100
FaeI CATG 6 cut(s) 567, 701, 898, 956, 1000, 1108
FalI AAGNNNNNCTT 2 cut(s) 50, 82
FatI CATG 6 cut(s) 563, 697, 894, 952, 996, 1104
FauNDI CATATG 1 cut(s) 849
FbaI TGATCA 1 cut(s) 784
Fnu4HI GCNGC 1 cut(s) 761
FokI GGATG 2 cut(s) 701, 840
FriOI GRGCYC 3 cut(s) 552, 640, 687
Fsp4HI GCNGC 1 cut(s) 761
FspBI CTAG 4 cut(s) 318, 791, 867, 882
GlaI GCGC 1 cut(s) 159
GluI GCNGC 1 cut(s) 761
GsuI CTGGAG 1 cut(s) 212
HapII CCGG 1 cut(s) 594
HgaI GACGC 1 cut(s) 82
HhaI GCGC 1 cut(s) 160
Hin1II CATG 6 cut(s) 567, 701, 898, 956, 1000, 1108
Hin6I GCGC 1 cut(s) 158
HinP1I GCGC 1 cut(s) 158
HindIII AAGCTT 1 cut(s) 254
HinfI GANTC 9 cut(s) 117, 132, 178, 215, 373, 571, 692, 917, 1123
HpaII CCGG 1 cut(s) 594
HphI GGTGA 2 cut(s) 23, 922
Hpy166II GTNNAC 1 cut(s) 1035
Hpy188I TCNGA 5 cut(s) 124, 433, 528, 538, 675
Hpy188III TCNNGA 6 cut(s) 138, 344, 731, 791, 962, 1131
Hpy8I GTNNAC 1 cut(s) 1035
HpyAV CCTTC 2 cut(s) 135, 818
HpyCH4III ACNGT 1 cut(s) 175
HpyCH4IV ACGT 1 cut(s) 837
HpyCH4V TGCA 3 cut(s) 338, 714, 844
HpyF10VI GCNNNNNNNGC 1 cut(s) 964
HpyF3I CTNAG 1 cut(s) 1062
HpySE526I ACGT 1 cut(s) 837
Hsp92II CATG 6 cut(s) 567, 701, 898, 956, 1000, 1108
HspAI GCGC 1 cut(s) 158
Ksp22I TGATCA 1 cut(s) 784
Kzo9I GATC 7 cut(s) 346, 412, 609, 670, 727, 784, 1041
LmnI GCTCC 1 cut(s) 547
Lsp1109I GCAGC 1 cut(s) 747
LweI GCATC 5 cut(s) 80, 723, 818, 853, 1063
MaeI CTAG 4 cut(s) 318, 791, 867, 882
MaeII ACGT 1 cut(s) 837
MaeIII GTNAC 2 cut(s) 301, 910
MalI GATC 7 cut(s) 348, 414, 611, 672, 729, 786, 1043
MboI GATC 7 cut(s) 346, 412, 609, 670, 727, 784, 1041
MboII GAAGA 7 cut(s) 287, 382, 449, 458, 580, 719, 1130
MflI RGATCY 1 cut(s) 412
MhlI GDGCHC 4 cut(s) 552, 601, 640, 687
MluCI AATT 6 cut(s) 83, 104, 152, 246, 398, 576
MlyI GAGTC 2 cut(s) 911, 1117
MroXI GAANNNNTTC 3 cut(s) 654, 754, 1031
MseI TTAA 3 cut(s) 531, 554, 941
MspI CCGG 1 cut(s) 594
MspR9I CCNGG 1 cut(s) 230
MvaI CCWGG 1 cut(s) 230
MvnI CGCG 1 cut(s) 160
MwoI GCNNNNNNNGC 1 cut(s) 964
NdeI CATATG 1 cut(s) 849
NdeII GATC 7 cut(s) 346, 412, 609, 670, 727, 784, 1041
NlaIII CATG 6 cut(s) 567, 701, 898, 956, 1000, 1108
NlaIV GGNNCC 1 cut(s) 598
NmuCI GTSAC 2 cut(s) 301, 910
PaeR7I CTCGAG 1 cut(s) 278
PdmI GAANNNNTTC 3 cut(s) 654, 754, 1031
PfeI GAWTC 7 cut(s) 117, 132, 178, 215, 373, 571, 692
PflFI GACNNNGTC 1 cut(s) 1126
PflMI CCANNNNNTGG 1 cut(s) 416
PkrI GCNGC 1 cut(s) 762
PleI GAGTC 2 cut(s) 911, 1117
PpsI GAGTC 2 cut(s) 911, 1117
Ppu21I YACGTR 1 cut(s) 838
Psp124BI GAGCTC 1 cut(s) 552
Psp6I CCWGG 1 cut(s) 228
PspGI CCWGG 1 cut(s) 228
PspN4I GGNNCC 1 cut(s) 598
PspPI GGNCC 2 cut(s) 223, 983
PspXI VCTCGAGB 1 cut(s) 278
PsuI RGATCY 1 cut(s) 412
PsyI GACNNNGTC 1 cut(s) 1126
RsaI GTAC 1 cut(s) 893
RsaNI GTAC 1 cut(s) 892
SacI GAGCTC 1 cut(s) 552
SaqAI TTAA 3 cut(s) 531, 554, 941
SatI GCNGC 1 cut(s) 761
Sau3AI GATC 7 cut(s) 346, 412, 609, 670, 727, 784, 1041
Sau96I GGNCC 2 cut(s) 223, 983
SchI GAGTC 2 cut(s) 911, 1117
ScrFI CCNGG 1 cut(s) 230
SduI GDGCHC 4 cut(s) 552, 601, 640, 687
SetI ASST 9 cut(s) 27, 113, 228, 258, 263, 552, 840, 933, 1098
SfaNI GCATC 5 cut(s) 80, 723, 818, 853, 1063
SfcI CTRYAG 2 cut(s) 112, 127
Sfr274I CTCGAG 1 cut(s) 278
SinI GGWCC 2 cut(s) 223, 983
SlaI CTCGAG 1 cut(s) 278
SmlI CTYRAG 3 cut(s) 56, 278, 962
SmoI CTYRAG 3 cut(s) 56, 278, 962
Sse9I AATT 6 cut(s) 83, 104, 152, 246, 398, 576
SsiI CCGC 2 cut(s) 289, 616
SspI AATATT 1 cut(s) 558
SspMI CTAG 4 cut(s) 318, 791, 867, 882
SstI GAGCTC 1 cut(s) 552
StyD4I CCNGG 1 cut(s) 228
StyI CCWWGG 1 cut(s) 219
TaaI ACNGT 1 cut(s) 175
TaiI ACGT 1 cut(s) 840
TaqI TCGA 6 cut(s) 88, 279, 345, 543, 669, 1132
TaqII GACCGA 1 cut(s) 971
TasI AATT 6 cut(s) 83, 104, 152, 246, 398, 576
TfiI GAWTC 7 cut(s) 117, 132, 178, 215, 373, 571, 692
Tru1I TTAA 3 cut(s) 531, 554, 941
Tru9I TTAA 3 cut(s) 531, 554, 941
TscAI CASTG 1 cut(s) 665
TseFI GTSAC 2 cut(s) 301, 910
TseI GCWGC 1 cut(s) 760
Tsp45I GTSAC 2 cut(s) 301, 910
TspDTI ATGAA 5 cut(s) 352, 663, 705, 911, 985
TspRI CASTG 1 cut(s) 665
Tth111I GACNNNGTC 1 cut(s) 1126
Van91I CCANNNNNTGG 1 cut(s) 416
VpaK11BI GGWCC 2 cut(s) 223, 983
XapI RAATTY 2 cut(s) 83, 576
XbaI TCTAGA 1 cut(s) 790
XhoI CTCGAG 1 cut(s) 278
XmnI GAANNNNTTC 3 cut(s) 654, 754, 1031
XspI CTAG 4 cut(s) 318, 791, 867, 882
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.