Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0019031

Physical Location & Seq

Genomic Coordinates Forward (+)

61933711 .. 61937290

Gene Structure 3580 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGTGGCTGTGAAGAAAACCAAGAAGACCCATGAGTCTATGAACAACAGGCTCGCTCTCGTCATGAACCTCTGGGCTACAAGACCATCATCAACACTCTCCGTAGCTCTAAAGCTGATTATAATCTCGAATAATTGCCCTTCTCTGAGAAAGTCGGAGATCGAGTACTATGCGATGCTTGCCAAGGTTGGAGTTCACCACCACTTTGGAACAAAGGTGAACTACAGCTACGGCACGCCCTTGGCGAATGTTGATTGGCTACATGGTGAGGCTGAGTCACTTCTCACTCTAACAAACATATTCATTGTGTTGGGGTTGGGAGAAGCTCTGAGGAAAGCTAAAGAAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L7Ae

Protein Analysis

116

Amino Acids

12.92

Weight (kDa)

9.63

Isoelectric Point (pI)

27.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3593	PF12159	50 - 110	8.3e-14	Protein of unknown function (DUF3593)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019031)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0301591
rosa_samantha	Rh2AG507100 Rh2CG492700 Rh4BG366200 Rh4DG083400 Rh5BG113700 Rh6AG319700 Rh7BG140600 Rh7BG461600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	122
AasI	GACNNNNNNGTC	1 cut(s)	34
AfaI	GTAC	1 cut(s)	167
AluBI	AGCT	5 cut(s)	107, 115, 228, 326, 338
AluI	AGCT	5 cut(s)	107, 115, 228, 326, 338
AsuHPI	GGTGA	3 cut(s)	188, 229, 278
BbsI	GAAGAC	1 cut(s)	32
BccI	CCATC	1 cut(s)	94
BceAI	ACGGC	1 cut(s)	247
BcgI	CGANNNNNNTGC	2 cut(s)	152, 186
BfmI	CTRYAG	1 cut(s)	223
BmcAI	AGTACT	1 cut(s)	167
BmsI	GCATC	1 cut(s)	165
BpiI	GAAGAC	1 cut(s)	32
BsaBI	GATNNNNATC	1 cut(s)	122
BsaJI	CCNNGG	2 cut(s)	183, 240
BsaXI	ACNNNNNCTCC	2 cut(s)	149, 179
Bse8I	GATNNNNATC	1 cut(s)	122
BseDI	CCNNGG	2 cut(s)	183, 240
BseJI	GATNNNNATC	1 cut(s)	122
BseMII	CTCAG	3 cut(s)	137, 264, 320
Bsp143I	GATC	1 cut(s)	159
BspCNI	CTCAG	3 cut(s)	138, 265, 321
BspHI	TCATGA	1 cut(s)	63
BssECI	CCNNGG	2 cut(s)	183, 240
BssMI	GATC	1 cut(s)	159
BssT1I	CCWWGG	2 cut(s)	183, 240
BstC8I	GCNNGC	3 cut(s)	54, 180, 236
BstDEI	CTNAG	3 cut(s)	146, 273, 329
BstKTI	GATC	1 cut(s)	162
BstMBI	GATC	1 cut(s)	159
BstMWI	GCNNNNNNNGC	1 cut(s)	179
BstSFI	CTRYAG	1 cut(s)	223
BstV2I	GAAGAC	1 cut(s)	32
BstXI	CCANNNNNNTGG	1 cut(s)	206
BtgZI	GCGATG	1 cut(s)	188
Cac8I	GCNNGC	3 cut(s)	54, 180, 236
CciI	TCATGA	1 cut(s)	63
Csp6I	GTAC	1 cut(s)	166
CviAII	CATG	3 cut(s)	32, 64, 263
CviQI	GTAC	1 cut(s)	166
DdeI	CTNAG	3 cut(s)	146, 273, 329
DpnI	GATC	1 cut(s)	161
DpnII	GATC	1 cut(s)	159
DrdI	GACNNNNNNGTC	1 cut(s)	34
DseDI	GACNNNNNNGTC	1 cut(s)	34
Eco130I	CCWWGG	2 cut(s)	183, 240
EcoT14I	CCWWGG	2 cut(s)	183, 240
ErhI	CCWWGG	2 cut(s)	183, 240
FaeI	CATG	3 cut(s)	35, 67, 266
FaiI	YATR	7 cut(s)	33, 41, 65, 122, 171, 264, 299
FatI	CATG	3 cut(s)	31, 63, 262
Hin1II	CATG	3 cut(s)	35, 67, 266
HinfI	GANTC	2 cut(s)	35, 275
HphI	GGTGA	3 cut(s)	188, 229, 278
Hpy166II	GTNNAC	2 cut(s)	196, 220
Hpy188I	TCNGA	3 cut(s)	147, 157, 330
Hpy188III	TCNNGA	2 cut(s)	64, 127
Hpy8I	GTNNAC	2 cut(s)	196, 220
HpyAV	CCTTC	1 cut(s)	150
HpyF10VI	GCNNNNNNNGC	1 cut(s)	179
HpyF3I	CTNAG	3 cut(s)	146, 273, 329
Hsp92II	CATG	3 cut(s)	35, 67, 266
Kzo9I	GATC	1 cut(s)	159
LpnPI	CCDG	2 cut(s)	34, 58
LweI	GCATC	1 cut(s)	165
MaeIII	GTNAC	1 cut(s)	276
MalI	GATC	1 cut(s)	161
MboI	GATC	1 cut(s)	159
MboII	GAAGA	2 cut(s)	25, 37
MluCI	AATT	1 cut(s)	133
MlyI	GAGTC	2 cut(s)	44, 284
MmeI	TCCRAC	2 cut(s)	135, 169
MnlI	CCTC	3 cut(s)	80, 262, 324
MwoI	GCNNNNNNNGC	1 cut(s)	179
NdeII	GATC	1 cut(s)	159
NlaIII	CATG	3 cut(s)	35, 67, 266
NmuCI	GTSAC	1 cut(s)	276
PagI	TCATGA	1 cut(s)	63
PcsI	WCGNNNNNNNCGW	1 cut(s)	242
PleI	GAGTC	2 cut(s)	43, 283
PpsI	GAGTC	2 cut(s)	43, 283
PsiI	TTATAA	1 cut(s)	122
PsrI	GAACNNNNNNTAC	2 cut(s)	212, 244
RsaI	GTAC	1 cut(s)	167
RsaNI	GTAC	1 cut(s)	166
Sau3AI	GATC	1 cut(s)	159
ScaI	AGTACT	1 cut(s)	167
SchI	GAGTC	2 cut(s)	44, 284
SetI	ASST	8 cut(s)	72, 109, 117, 189, 219, 230, 328, 340
SfaNI	GCATC	1 cut(s)	165
SfcI	CTRYAG	1 cut(s)	223
Sse9I	AATT	1 cut(s)	133
StyI	CCWWGG	2 cut(s)	183, 240
TaqI	TCGA	2 cut(s)	128, 162
TasI	AATT	1 cut(s)	133
TatI	WGTACW	1 cut(s)	165
TseFI	GTSAC	1 cut(s)	276
Tsp45I	GTSAC	1 cut(s)	276
TspDTI	ATGAA	3 cut(s)	56, 80, 292
TspGWI	ACGGA	1 cut(s)	91
ZrmI	AGTACT	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.