Rh4BG366200

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
Physical Location & Seq
Forward (+)
52530546 .. 52530893
348 bp
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UTR
Exon/CDS
Intron
Rh4BG366200.1

Sequence Viewer

Length: 348 bp
ATGCGATTTCGATTTCAGCTCAATCCAAAGTTCCAAACTTTACTAAAGCAATGCTCCATTAAACCAAAACCCAGTTCTCTAATCACAACCAAAACTCAACAAATTGCCAAAACCCAGTTCTCCAATCACAACCAAAACCTAACAAATTGTACACAAACCTTCAACAAGGTACGAAGCAAATTAATGAGGGAAAGTGAGGTTGAAGAAGATAAAGAAAAGGGCCTAGAATGCAGATGGTATGAATGCATTGCCATTGTAAACCAGACGCAAATAGATGCAGGTGCTCCACTATCTCAAAAATCTCAGAGCTTCAAATTAAATTGTAGCAATTCCACTTGCAAGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

13.25

Weight (kDa)

9.51

Isoelectric Point (pI)

39.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0019031)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 269
Acc36I ACCTGC 1 cut(s) 269
AfaI GTAC 2 cut(s) 151, 171
AgsI TTSAA 3 cut(s) 163, 203, 313
AjuI GAANNNNNNNTTGG 4 cut(s) 58, 90, 101, 133
AluBI AGCT 2 cut(s) 19, 309
AluI AGCT 2 cut(s) 19, 309
Alw21I GWGCWC 1 cut(s) 286
AoxI GGCC 1 cut(s) 220
AseI ATTAAT 1 cut(s) 182
AspS9I GGNCC 1 cut(s) 220
Bbv12I GWGCWC 1 cut(s) 286
BccI CCATC 1 cut(s) 228
BfaI CTAG 1 cut(s) 224
BfuAI ACCTGC 1 cut(s) 269
BmgT120I GGNCC 1 cut(s) 220
BmrI ACTGGG 2 cut(s) 66, 109
BmsI GCATC 1 cut(s) 265
BmuI ACTGGG 2 cut(s) 66, 109
Bse1I ACTGG 2 cut(s) 72, 115
Bse3DI GCAATG 2 cut(s) 56, 246
BseMI GCAATG 2 cut(s) 56, 246
BseMII CTCAG 1 cut(s) 317
BseNI ACTGG 2 cut(s) 72, 115
BshFI GGCC 1 cut(s) 222
BsiHKAI GWGCWC 1 cut(s) 286
BsmI GAATGC 2 cut(s) 233, 248
BsnI GGCC 1 cut(s) 222
Bsp1286I GDGCHC 1 cut(s) 286
Bsp1407I TGTACA 1 cut(s) 149
BspANI GGCC 1 cut(s) 222
BspCNI CTCAG 1 cut(s) 316
BspMI ACCTGC 1 cut(s) 269
BsrDI GCAATG 2 cut(s) 56, 246
BsrGI TGTACA 1 cut(s) 149
BsrI ACTGG 2 cut(s) 72, 115
BstAUI TGTACA 1 cut(s) 149
BstDEI CTNAG 1 cut(s) 303
BstMWI GCNNNNNNNGC 1 cut(s) 228
BsuRI GGCC 1 cut(s) 222
BveI ACCTGC 1 cut(s) 269
Cfr13I GGNCC 1 cut(s) 220
CseI GACGC 1 cut(s) 274
Csp6I GTAC 2 cut(s) 150, 170
CviJI RGCY 3 cut(s) 19, 222, 309
CviKI_1 RGCY 3 cut(s) 19, 222, 309
CviQI GTAC 2 cut(s) 150, 170
DdeI CTNAG 1 cut(s) 303
EcoO109I RGGNCCY 1 cut(s) 220
EcoT22I ATGCAT 1 cut(s) 248
FaiI YATR 1 cut(s) 240
FspBI CTAG 1 cut(s) 224
HaeIII GGCC 1 cut(s) 222
HgaI GACGC 1 cut(s) 274
Hpy166II GTNNAC 2 cut(s) 152, 259
Hpy188I TCNGA 1 cut(s) 306
Hpy188III TCNNGA 1 cut(s) 345
Hpy8I GTNNAC 2 cut(s) 152, 259
HpyAV CCTTC 1 cut(s) 169
HpyCH4V TGCA 4 cut(s) 231, 246, 278, 339
HpyF10VI GCNNNNNNNGC 1 cut(s) 228
HpyF3I CTNAG 1 cut(s) 303
LmnI GCTCC 2 cut(s) 59, 289
LpnPI CCDG 4 cut(s) 85, 128, 264, 275
LweI GCATC 1 cut(s) 265
MaeI CTAG 1 cut(s) 224
MboII GAAGA 2 cut(s) 215, 218
MhlI GDGCHC 1 cut(s) 286
MluCI AATT 6 cut(s) 102, 145, 179, 314, 319, 328
MnlI CCTC 2 cut(s) 180, 190
Mph1103I ATGCAT 1 cut(s) 248
MseI TTAA 3 cut(s) 60, 182, 317
Mva1269I GAATGC 2 cut(s) 233, 248
MwoI GCNNNNNNNGC 1 cut(s) 228
NsiI ATGCAT 1 cut(s) 248
PaqCI CACCTGC 1 cut(s) 269
PctI GAATGC 2 cut(s) 233, 248
PshBI ATTAAT 1 cut(s) 182
PspPI GGNCC 1 cut(s) 220
RsaI GTAC 2 cut(s) 151, 171
RsaNI GTAC 2 cut(s) 150, 170
SaqAI TTAA 3 cut(s) 60, 182, 317
Sau96I GGNCC 1 cut(s) 220
SduI GDGCHC 1 cut(s) 286
SetI ASST 7 cut(s) 21, 141, 161, 171, 201, 283, 311
SfaNI GCATC 1 cut(s) 265
SgeI CNNG 6 cut(s) 84, 127, 178, 236, 274, 291
Sse9I AATT 6 cut(s) 102, 145, 179, 314, 319, 328
SspMI CTAG 1 cut(s) 224
TaqI TCGA 1 cut(s) 10
TasI AATT 6 cut(s) 102, 145, 179, 314, 319, 328
TatI WGTACW 1 cut(s) 149
Tru1I TTAA 3 cut(s) 60, 182, 317
Tru9I TTAA 3 cut(s) 60, 182, 317
TspDTI ATGAA 1 cut(s) 255
VspI ATTAAT 1 cut(s) 182
XspI CTAG 1 cut(s) 224
Zsp2I ATGCAT 1 cut(s) 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.