Rh2AG507100

Protein of unknown function (DUF3593)

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Forward (+)
72984211 .. 72999532
15322 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG507100.1

Sequence Viewer

Length: 252 bp
ATGGTTGCAAGGAAGCTGATTATAATCTCGAACAATTGCCCTTCTCTAAGAAAGTCGGAGATCGAGTACTATGCGATGCTTGCCAAGGTTGGAGTTCACCACCACAATGGAACAAAGGTGAACTACAGCTACGGCACGCCCTTGGCGAATGTTGATTGGCTACATGGTGAGGCTGAGTCACTTCTCACTCTAACAAACATATTCATTGTGTTGGGGTTGGGAGAAGCTCTGAGGAAAGCTAAAGAAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

83

Amino Acids

9.24

Weight (kDa)

8.82

Isoelectric Point (pI)

28.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3593 PF12159 18 - 77 8.7e-14 Protein of unknown function (DUF3593)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0019031)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 23
AfaI GTAC 1 cut(s) 68
AluBI AGCT 4 cut(s) 16, 129, 227, 239
AluI AGCT 4 cut(s) 16, 129, 227, 239
AsuHPI GGTGA 3 cut(s) 89, 130, 179
BceAI ACGGC 1 cut(s) 148
BcgI CGANNNNNNTGC 2 cut(s) 53, 87
BfmI CTRYAG 1 cut(s) 124
BmcAI AGTACT 1 cut(s) 68
BmsI GCATC 1 cut(s) 66
BsaBI GATNNNNATC 1 cut(s) 23
BsaJI CCNNGG 2 cut(s) 84, 141
BsaXI ACNNNNNCTCC 2 cut(s) 50, 80
Bse8I GATNNNNATC 1 cut(s) 23
BseDI CCNNGG 2 cut(s) 84, 141
BseJI GATNNNNATC 1 cut(s) 23
BseMII CTCAG 2 cut(s) 165, 221
Bsp143I GATC 1 cut(s) 60
BspCNI CTCAG 2 cut(s) 166, 222
BssECI CCNNGG 2 cut(s) 84, 141
BssMI GATC 1 cut(s) 60
BssT1I CCWWGG 2 cut(s) 84, 141
BstC8I GCNNGC 2 cut(s) 81, 137
BstDEI CTNAG 3 cut(s) 47, 174, 230
BstKTI GATC 1 cut(s) 63
BstMBI GATC 1 cut(s) 60
BstMWI GCNNNNNNNGC 1 cut(s) 80
BstSFI CTRYAG 1 cut(s) 124
BstXI CCANNNNNNTGG 1 cut(s) 107
BtgZI GCGATG 1 cut(s) 89
Cac8I GCNNGC 2 cut(s) 81, 137
Csp6I GTAC 1 cut(s) 67
CviAII CATG 1 cut(s) 164
CviJI RGCY 6 cut(s) 16, 129, 160, 173, 227, 239
CviKI_1 RGCY 6 cut(s) 16, 129, 160, 173, 227, 239
CviQI GTAC 1 cut(s) 67
DdeI CTNAG 3 cut(s) 47, 174, 230
DpnI GATC 1 cut(s) 62
DpnII GATC 1 cut(s) 60
Eco130I CCWWGG 2 cut(s) 84, 141
EcoT14I CCWWGG 2 cut(s) 84, 141
ErhI CCWWGG 2 cut(s) 84, 141
FaeI CATG 1 cut(s) 167
FaiI YATR 4 cut(s) 23, 72, 165, 200
FatI CATG 1 cut(s) 163
Hin1II CATG 1 cut(s) 167
HinfI GANTC 1 cut(s) 176
HphI GGTGA 3 cut(s) 89, 130, 179
Hpy166II GTNNAC 2 cut(s) 97, 121
Hpy188I TCNGA 2 cut(s) 58, 231
Hpy188III TCNNGA 1 cut(s) 28
Hpy8I GTNNAC 2 cut(s) 97, 121
HpyAV CCTTC 1 cut(s) 51
HpyCH4V TGCA 1 cut(s) 8
HpyF10VI GCNNNNNNNGC 1 cut(s) 80
HpyF3I CTNAG 3 cut(s) 47, 174, 230
Hsp92II CATG 1 cut(s) 167
Kzo9I GATC 1 cut(s) 60
LweI GCATC 1 cut(s) 66
MaeIII GTNAC 1 cut(s) 177
MalI GATC 1 cut(s) 62
MboI GATC 1 cut(s) 60
MfeI CAATTG 1 cut(s) 34
MluCI AATT 1 cut(s) 34
MlyI GAGTC 1 cut(s) 185
MmeI TCCRAC 2 cut(s) 36, 70
MnlI CCTC 2 cut(s) 163, 225
MslI CAYNNNNRTG 1 cut(s) 105
MunI CAATTG 1 cut(s) 34
MwoI GCNNNNNNNGC 1 cut(s) 80
NdeII GATC 1 cut(s) 60
NlaIII CATG 1 cut(s) 167
NmuCI GTSAC 1 cut(s) 177
PcsI WCGNNNNNNNCGW 1 cut(s) 143
PleI GAGTC 1 cut(s) 184
PpsI GAGTC 1 cut(s) 184
PsiI TTATAA 1 cut(s) 23
PsrI GAACNNNNNNTAC 2 cut(s) 113, 145
RsaI GTAC 1 cut(s) 68
RsaNI GTAC 1 cut(s) 67
RseI CAYNNNNRTG 1 cut(s) 105
Sau3AI GATC 1 cut(s) 60
ScaI AGTACT 1 cut(s) 68
SchI GAGTC 1 cut(s) 185
SetI ASST 6 cut(s) 18, 90, 120, 131, 229, 241
SfaNI GCATC 1 cut(s) 66
SfcI CTRYAG 1 cut(s) 124
SgeI CNNG 8 cut(s) 21, 40, 76, 92, 97, 148, 154, 176
SmiMI CAYNNNNRTG 1 cut(s) 105
Sse9I AATT 1 cut(s) 34
StyI CCWWGG 2 cut(s) 84, 141
TaqI TCGA 2 cut(s) 29, 63
TasI AATT 1 cut(s) 34
TatI WGTACW 1 cut(s) 66
TseFI GTSAC 1 cut(s) 177
Tsp45I GTSAC 1 cut(s) 177
TspDTI ATGAA 1 cut(s) 193
ZrmI AGTACT 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.