Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0019031

Physical Location & Seq

Genomic Coordinates Reverse (-)

51953266 .. 51963968

Gene Structure 10703 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG319700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGAGTGACGTGGAGGCTCGCTCTCGTCATGAACCTCTGGGCTACAAGACCATCATCAACACTCTCCGTAGCTCCAAAGGGAAGCTGATTATAATCTCGAACAATTGCCCTTCTCTGAGAAAGTCGGAGATCGAGTACTATGCGATGCTTGCCAAGGTTGGAGTTCACCACCACAATGGAACAAAGGTGAACTACAGCTACGGCACGCCCTTGGCGAATGTTGATTGGCTACATGCTTTTAATGTAATTGGGTGTGCATTTGTGGATGCCTCAATTAATAGGACGGAAAGGCTGAGTTTGGGAAGCACCAACACTCAAGCCAAAGTCATGGGTAAGAATGTAAGATCAGAACATAAGGTGATCAAAGTTGGAGGTGCCAACATGATTGAGAAGGCATGGCATGGTGATCTGGTCTTTCACAAGCATGTCTTGATCTCTTTAAGTCTTTGTGTTTTCGCTTTTATCCGCTTGCTCGACAAATATCGTAGATTGAGAAGGATGAGGAAAAAGGCAATGATTGTGATGCCAGTAGATGAGAAGGATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L7Ae

Protein Analysis

182

Amino Acids

20.66

Weight (kDa)

9.86

Isoelectric Point (pI)

39.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L7Ae	PF01248	13 - 61	1.8e-07	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019031)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0301591
rosa_samantha	Rh2AG507100 Rh2CG492700 Rh4BG366200 Rh4DG083400 Rh5BG113700 Rh6AG319700 Rh7BG140600 Rh7BG461600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	92
AccB1I	GGYRCC	1 cut(s)	374
AciI	CCGC	1 cut(s)	466
AfaI	GTAC	1 cut(s)	137
AjiI	CACGTC	1 cut(s)	10
AluBI	AGCT	3 cut(s)	72, 85, 198
AluI	AGCT	3 cut(s)	72, 85, 198
AseI	ATTAAT	1 cut(s)	276
AsuHPI	GGTGA	4 cut(s)	158, 199, 370, 416
BanI	GGYRCC	1 cut(s)	374
BccI	CCATC	1 cut(s)	59
BceAI	ACGGC	1 cut(s)	217
BcgI	CGANNNNNNTGC	2 cut(s)	122, 156
BclI	TGATCA	1 cut(s)	360
BfmI	CTRYAG	1 cut(s)	193
BmcAI	AGTACT	1 cut(s)	137
BmgBI	CACGTC	1 cut(s)	10
BmiI	GGNNCC	1 cut(s)	376
BmsI	GCATC	3 cut(s)	135, 256, 513
BplI	GAGNNNNNCTC	1 cut(s)	37
BpuEI	CTTGAG	1 cut(s)	300
BsaBI	GATNNNNATC	1 cut(s)	92
BsaJI	CCNNGG	2 cut(s)	153, 210
BsaXI	ACNNNNNCTCC	2 cut(s)	119, 149
Bse1I	ACTGG	1 cut(s)	527
Bse3DI	GCAATG	1 cut(s)	519
Bse8I	GATNNNNATC	1 cut(s)	92
BseDI	CCNNGG	2 cut(s)	153, 210
BseGI	GGATG	3 cut(s)	271, 504, 547
BseJI	GATNNNNATC	1 cut(s)	92
BseMI	GCAATG	1 cut(s)	519
BseMII	CTCAG	2 cut(s)	107, 284
BseNI	ACTGG	1 cut(s)	527
BshNI	GGYRCC	1 cut(s)	374
Bsp143I	GATC	5 cut(s)	129, 344, 360, 406, 432
BspACI	CCGC	1 cut(s)	466
BspCNI	CTCAG	2 cut(s)	108, 285
BspHI	TCATGA	1 cut(s)	28
BspLI	GGNNCC	1 cut(s)	376
BspT107I	GGYRCC	1 cut(s)	374
BsrDI	GCAATG	1 cut(s)	519
BsrI	ACTGG	1 cut(s)	527
BssECI	CCNNGG	2 cut(s)	153, 210
BssMI	GATC	5 cut(s)	129, 344, 360, 406, 432
BssT1I	CCWWGG	2 cut(s)	153, 210
BstC8I	GCNNGC	4 cut(s)	19, 150, 206, 470
BstDEI	CTNAG	2 cut(s)	116, 293
BstF5I	GGATG	3 cut(s)	271, 504, 547
BstKTI	GATC	5 cut(s)	132, 347, 363, 409, 435
BstMBI	GATC	5 cut(s)	129, 344, 360, 406, 432
BstMWI	GCNNNNNNNGC	1 cut(s)	149
BstNSI	RCATGY	2 cut(s)	236, 428
BstSFI	CTRYAG	1 cut(s)	193
BstXI	CCANNNNNNTGG	2 cut(s)	176, 328
BtgZI	GCGATG	1 cut(s)	158
BtrI	CACGTC	1 cut(s)	10
BtsCI	GGATG	3 cut(s)	271, 504, 547
Cac8I	GCNNGC	4 cut(s)	19, 150, 206, 470
CciI	TCATGA	1 cut(s)	28
Csp6I	GTAC	1 cut(s)	136
CviAII	CATG	7 cut(s)	29, 233, 328, 382, 396, 401, 425
CviJI	RGCY	8 cut(s)	17, 42, 72, 85, 198, 229, 292, 320
CviKI_1	RGCY	8 cut(s)	17, 42, 72, 85, 198, 229, 292, 320
CviQI	GTAC	1 cut(s)	136
DdeI	CTNAG	2 cut(s)	116, 293
DpnI	GATC	5 cut(s)	131, 346, 362, 408, 434
DpnII	GATC	5 cut(s)	129, 344, 360, 406, 432
Eco130I	CCWWGG	2 cut(s)	153, 210
EcoT14I	CCWWGG	2 cut(s)	153, 210
ErhI	CCWWGG	2 cut(s)	153, 210
FaeI	CATG	7 cut(s)	32, 236, 331, 385, 399, 404, 428
FalI	AAGNNNNNCTT	2 cut(s)	413, 445
FatI	CATG	7 cut(s)	28, 232, 327, 381, 395, 400, 424
FbaI	TGATCA	1 cut(s)	360
FokI	GGATG	2 cut(s)	278, 511
Hin1II	CATG	7 cut(s)	32, 236, 331, 385, 399, 404, 428
HphI	GGTGA	4 cut(s)	158, 199, 370, 416
Hpy166II	GTNNAC	2 cut(s)	166, 190
Hpy188I	TCNGA	3 cut(s)	117, 127, 349
Hpy188III	TCNNGA	3 cut(s)	29, 97, 430
Hpy8I	GTNNAC	2 cut(s)	166, 190
HpyAV	CCTTC	4 cut(s)	120, 385, 489, 532
HpyCH4IV	ACGT	1 cut(s)	9
HpyCH4V	TGCA	1 cut(s)	257
HpyF10VI	GCNNNNNNNGC	1 cut(s)	149
HpyF3I	CTNAG	2 cut(s)	116, 293
HpySE526I	ACGT	1 cut(s)	9
Hsp92II	CATG	7 cut(s)	32, 236, 331, 385, 399, 404, 428
Ksp22I	TGATCA	1 cut(s)	360
Kzo9I	GATC	5 cut(s)	129, 344, 360, 406, 432
LmnI	GCTCC	1 cut(s)	77
LpnPI	CCDG	3 cut(s)	23, 395, 540
LweI	GCATC	3 cut(s)	135, 256, 513
MaeII	ACGT	1 cut(s)	9
MaeIII	GTNAC	1 cut(s)	5
MalI	GATC	5 cut(s)	131, 346, 362, 408, 434
MboI	GATC	5 cut(s)	129, 344, 360, 406, 432
MfeI	CAATTG	1 cut(s)	103
MluCI	AATT	3 cut(s)	103, 246, 273
MmeI	TCCRAC	3 cut(s)	105, 139, 349
MnlI	CCTC	5 cut(s)	7, 45, 280, 365, 495
MseI	TTAA	3 cut(s)	240, 276, 440
MslI	CAYNNNNRTG	2 cut(s)	174, 423
MunI	CAATTG	1 cut(s)	103
MwoI	GCNNNNNNNGC	1 cut(s)	149
NdeII	GATC	5 cut(s)	129, 344, 360, 406, 432
NlaIII	CATG	7 cut(s)	32, 236, 331, 385, 399, 404, 428
NlaIV	GGNNCC	1 cut(s)	376
NmuCI	GTSAC	1 cut(s)	5
NspI	RCATGY	2 cut(s)	236, 428
PagI	TCATGA	1 cut(s)	28
PcsI	WCGNNNNNNNCGW	1 cut(s)	212
PshBI	ATTAAT	1 cut(s)	276
PsiI	TTATAA	1 cut(s)	92
PspN4I	GGNNCC	1 cut(s)	376
PsrI	GAACNNNNNNTAC	2 cut(s)	182, 214
RsaI	GTAC	1 cut(s)	137
RsaNI	GTAC	1 cut(s)	136
RseI	CAYNNNNRTG	2 cut(s)	174, 423
SaqAI	TTAA	3 cut(s)	240, 276, 440
Sau3AI	GATC	5 cut(s)	129, 344, 360, 406, 432
ScaI	AGTACT	1 cut(s)	137
SetI	ASST	9 cut(s)	12, 37, 74, 87, 159, 189, 200, 360, 376
SfaNI	GCATC	3 cut(s)	135, 256, 513
SfcI	CTRYAG	1 cut(s)	193
SmiMI	CAYNNNNRTG	2 cut(s)	174, 423
SmlI	CTYRAG	1 cut(s)	315
SmoI	CTYRAG	1 cut(s)	315
Sse9I	AATT	3 cut(s)	103, 246, 273
SsiI	CCGC	1 cut(s)	466
StyI	CCWWGG	2 cut(s)	153, 210
TaiI	ACGT	1 cut(s)	12
TaqI	TCGA	3 cut(s)	98, 132, 474
TasI	AATT	3 cut(s)	103, 246, 273
TatI	WGTACW	1 cut(s)	135
Tru1I	TTAA	3 cut(s)	240, 276, 440
Tru9I	TTAA	3 cut(s)	240, 276, 440
TseFI	GTSAC	1 cut(s)	5
Tsp45I	GTSAC	1 cut(s)	5
TspDTI	ATGAA	1 cut(s)	45
TspGWI	ACGGA	2 cut(s)	56, 299
VspI	ATTAAT	1 cut(s)	276
XceI	RCATGY	2 cut(s)	236, 428
ZrmI	AGTACT	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.