No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr6g0301591 |
| rosa_samantha | Rh2AG507100 Rh2CG492700 Rh4BG366200 Rh4DG083400 Rh5BG113700 Rh6AG319700 Rh7BG140600 Rh7BG461600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AfaI | GTAC | 2 cut(s) | 151, 171 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 165 |
| AgsI | TTSAA | 3 cut(s) | 163, 203, 313 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 58, 90, 101, 133 |
| AluBI | AGCT | 3 cut(s) | 19, 284, 309 |
| AluI | AGCT | 3 cut(s) | 19, 284, 309 |
| Alw21I | GWGCWC | 1 cut(s) | 286 |
| AoxI | GGCC | 1 cut(s) | 220 |
| ApaI | GGGCCC | 1 cut(s) | 224 |
| AseI | ATTAAT | 1 cut(s) | 182 |
| AspS9I | GGNCC | 2 cut(s) | 220, 221 |
| BaeGI | GKGCMC | 1 cut(s) | 224 |
| BanII | GRGCYC | 2 cut(s) | 224, 286 |
| Bbv12I | GWGCWC | 1 cut(s) | 286 |
| BccI | CCATC | 1 cut(s) | 228 |
| BmgT120I | GGNCC | 2 cut(s) | 220, 221 |
| BmiI | GGNNCC | 1 cut(s) | 222 |
| BmrI | ACTGGG | 2 cut(s) | 66, 109 |
| BmsI | GCATC | 1 cut(s) | 265 |
| BmuI | ACTGGG | 2 cut(s) | 66, 109 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 165 |
| Bse1I | ACTGG | 2 cut(s) | 72, 115 |
| Bse3DI | GCAATG | 2 cut(s) | 56, 246 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 165 |
| BseMI | GCAATG | 2 cut(s) | 56, 246 |
| BseMII | CTCAG | 1 cut(s) | 317 |
| BseNI | ACTGG | 2 cut(s) | 72, 115 |
| BseSI | GKGCMC | 1 cut(s) | 224 |
| BshFI | GGCC | 1 cut(s) | 222 |
| BsiHKAI | GWGCWC | 1 cut(s) | 286 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 165 |
| BsmI | GAATGC | 2 cut(s) | 233, 248 |
| BsnI | GGCC | 1 cut(s) | 222 |
| Bsp120I | GGGCCC | 1 cut(s) | 220 |
| Bsp1286I | GDGCHC | 2 cut(s) | 224, 286 |
| Bsp1407I | TGTACA | 1 cut(s) | 149 |
| Bsp143I | GATC | 1 cut(s) | 124 |
| BspANI | GGCC | 1 cut(s) | 222 |
| BspCNI | CTCAG | 1 cut(s) | 316 |
| BspLI | GGNNCC | 1 cut(s) | 222 |
| BsrDI | GCAATG | 2 cut(s) | 56, 246 |
| BsrGI | TGTACA | 1 cut(s) | 149 |
| BsrI | ACTGG | 2 cut(s) | 72, 115 |
| BssMI | GATC | 1 cut(s) | 124 |
| BstAUI | TGTACA | 1 cut(s) | 149 |
| BstDEI | CTNAG | 1 cut(s) | 303 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 163 |
| BstKTI | GATC | 1 cut(s) | 127 |
| BstMBI | GATC | 1 cut(s) | 124 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 228 |
| BstSLI | GKGCMC | 1 cut(s) | 224 |
| BsuRI | GGCC | 1 cut(s) | 222 |
| Cfr13I | GGNCC | 2 cut(s) | 220, 221 |
| CseI | GACGC | 1 cut(s) | 274 |
| Csp6I | GTAC | 2 cut(s) | 150, 170 |
| CviJI | RGCY | 4 cut(s) | 19, 222, 284, 309 |
| CviKI_1 | RGCY | 4 cut(s) | 19, 222, 284, 309 |
| CviQI | GTAC | 2 cut(s) | 150, 170 |
| DdeI | CTNAG | 1 cut(s) | 303 |
| DpnI | GATC | 1 cut(s) | 126 |
| DpnII | GATC | 1 cut(s) | 124 |
| Ecl136II | GAGCTC | 1 cut(s) | 284 |
| Eco24I | GRGCYC | 2 cut(s) | 224, 286 |
| Eco53kI | GAGCTC | 1 cut(s) | 284 |
| EcoICRI | GAGCTC | 1 cut(s) | 284 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 163 |
| EcoO109I | RGGNCCY | 1 cut(s) | 220 |
| EcoT22I | ATGCAT | 1 cut(s) | 248 |
| EcoT38I | GRGCYC | 2 cut(s) | 224, 286 |
| FaiI | YATR | 1 cut(s) | 240 |
| FriOI | GRGCYC | 2 cut(s) | 224, 286 |
| HaeIII | GGCC | 1 cut(s) | 222 |
| HgaI | GACGC | 1 cut(s) | 274 |
| Hpy166II | GTNNAC | 2 cut(s) | 152, 259 |
| Hpy188I | TCNGA | 2 cut(s) | 124, 306 |
| Hpy188III | TCNNGA | 1 cut(s) | 345 |
| Hpy8I | GTNNAC | 2 cut(s) | 152, 259 |
| HpyAV | CCTTC | 1 cut(s) | 169 |
| HpyCH4V | TGCA | 5 cut(s) | 4, 231, 246, 278, 339 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 228 |
| HpyF3I | CTNAG | 1 cut(s) | 303 |
| Kzo9I | GATC | 1 cut(s) | 124 |
| LmnI | GCTCC | 3 cut(s) | 59, 281, 289 |
| LpnPI | CCDG | 6 cut(s) | 85, 128, 151, 237, 264, 275 |
| LweI | GCATC | 1 cut(s) | 265 |
| MalI | GATC | 1 cut(s) | 126 |
| MboI | GATC | 1 cut(s) | 124 |
| MboII | GAAGA | 2 cut(s) | 215, 218 |
| MhlI | GDGCHC | 2 cut(s) | 224, 286 |
| MluCI | AATT | 7 cut(s) | 5, 102, 145, 179, 314, 319, 328 |
| MnlI | CCTC | 2 cut(s) | 180, 190 |
| Mph1103I | ATGCAT | 1 cut(s) | 248 |
| MseI | TTAA | 3 cut(s) | 60, 182, 317 |
| Mva1269I | GAATGC | 2 cut(s) | 233, 248 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 228 |
| NdeII | GATC | 1 cut(s) | 124 |
| NlaIV | GGNNCC | 1 cut(s) | 222 |
| NsiI | ATGCAT | 1 cut(s) | 248 |
| PctI | GAATGC | 2 cut(s) | 233, 248 |
| PshBI | ATTAAT | 1 cut(s) | 182 |
| Psp124BI | GAGCTC | 1 cut(s) | 286 |
| PspN4I | GGNNCC | 1 cut(s) | 222 |
| PspOMI | GGGCCC | 1 cut(s) | 220 |
| PspPI | GGNCC | 2 cut(s) | 220, 221 |
| RsaI | GTAC | 2 cut(s) | 151, 171 |
| RsaNI | GTAC | 2 cut(s) | 150, 170 |
| SacI | GAGCTC | 1 cut(s) | 286 |
| SaqAI | TTAA | 3 cut(s) | 60, 182, 317 |
| Sau3AI | GATC | 1 cut(s) | 124 |
| Sau96I | GGNCC | 2 cut(s) | 220, 221 |
| SduI | GDGCHC | 2 cut(s) | 224, 286 |
| SetI | ASST | 5 cut(s) | 21, 161, 201, 286, 311 |
| SfaNI | GCATC | 1 cut(s) | 265 |
| SgeI | CNNG | 6 cut(s) | 84, 127, 178, 236, 274, 291 |
| Sse9I | AATT | 7 cut(s) | 5, 102, 145, 179, 314, 319, 328 |
| SstI | GAGCTC | 1 cut(s) | 286 |
| TaqI | TCGA | 1 cut(s) | 10 |
| TasI | AATT | 7 cut(s) | 5, 102, 145, 179, 314, 319, 328 |
| TatI | WGTACW | 1 cut(s) | 149 |
| Tru1I | TTAA | 3 cut(s) | 60, 182, 317 |
| Tru9I | TTAA | 3 cut(s) | 60, 182, 317 |
| TspDTI | ATGAA | 1 cut(s) | 255 |
| VspI | ATTAAT | 1 cut(s) | 182 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 163 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 231 |
| Zsp2I | ATGCAT | 1 cut(s) | 248 |