Rh4DG083400

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
Physical Location & Seq
Forward (+)
12587398 .. 12587745
348 bp
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UTR
Exon/CDS
Intron
Rh4DG083400.1

Sequence Viewer

Length: 348 bp
ATGCGATTTCGATTTCAGCTCAATCTAAAGTTCCAAACTTTACTAAAGCAATGCTCCATTAAACCAAAACCTAGTTCTCTAATCACAACCAAAACTCAACAAATTGCCAAAATCCAGTTCTCCAATCACAACCAAAACCCAACAAATTGTACACAAACCTTCAACAGGGTACGAAGCAAATTAATGAGGGAAAGTGAGGTTGAAGAAGATAAAGAAAAGGGCCCAGAATGCAGATGGTATGAATGCATTGCCATTGTAAACCAGACGCAAACAGATGCAGGTACTCCACTATCCCAAAAATCTCAAAGCTTCAAATTAAATTGTAGCAATTCCACTTGCAAGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

13.29

Weight (kDa)

9.54

Isoelectric Point (pI)

37.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0019031)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 269
AfaI GTAC 3 cut(s) 151, 171, 283
AfiI CCNNNNNNNGG 1 cut(s) 165
AgsI TTSAA 3 cut(s) 163, 203, 313
AjuI GAANNNNNNNTTGG 4 cut(s) 58, 90, 101, 133
AluBI AGCT 2 cut(s) 19, 309
AluI AGCT 2 cut(s) 19, 309
AoxI GGCC 1 cut(s) 220
ApaI GGGCCC 1 cut(s) 224
AseI ATTAAT 1 cut(s) 182
AspS9I GGNCC 2 cut(s) 220, 221
BaeGI GKGCMC 1 cut(s) 224
BanII GRGCYC 1 cut(s) 224
BccI CCATC 1 cut(s) 228
BfaI CTAG 1 cut(s) 72
BfuAI ACCTGC 1 cut(s) 269
BmgT120I GGNCC 2 cut(s) 220, 221
BmiI GGNNCC 1 cut(s) 222
BmsI GCATC 1 cut(s) 265
Bsc4I CCNNNNNNNGG 1 cut(s) 165
Bse1I ACTGG 1 cut(s) 115
Bse3DI GCAATG 2 cut(s) 56, 246
BseLI CCNNNNNNNGG 1 cut(s) 165
BseMI GCAATG 2 cut(s) 56, 246
BseNI ACTGG 1 cut(s) 115
BseSI GKGCMC 1 cut(s) 224
BshFI GGCC 1 cut(s) 222
BslI CCNNNNNNNGG 1 cut(s) 165
BsmI GAATGC 2 cut(s) 233, 248
BsnI GGCC 1 cut(s) 222
Bsp120I GGGCCC 1 cut(s) 220
Bsp1286I GDGCHC 1 cut(s) 224
Bsp1407I TGTACA 1 cut(s) 149
BspANI GGCC 1 cut(s) 222
BspLI GGNNCC 1 cut(s) 222
BspMI ACCTGC 1 cut(s) 269
BsrDI GCAATG 2 cut(s) 56, 246
BsrGI TGTACA 1 cut(s) 149
BsrI ACTGG 1 cut(s) 115
BstAUI TGTACA 1 cut(s) 149
BstENI CCTNNNNNAGG 1 cut(s) 163
BstMWI GCNNNNNNNGC 1 cut(s) 228
BstSLI GKGCMC 1 cut(s) 224
BsuRI GGCC 1 cut(s) 222
BveI ACCTGC 1 cut(s) 269
Cfr13I GGNCC 2 cut(s) 220, 221
CseI GACGC 1 cut(s) 274
Csp6I GTAC 3 cut(s) 150, 170, 282
CviJI RGCY 3 cut(s) 19, 222, 309
CviKI_1 RGCY 3 cut(s) 19, 222, 309
CviQI GTAC 3 cut(s) 150, 170, 282
Eco24I GRGCYC 1 cut(s) 224
EcoNI CCTNNNNNAGG 1 cut(s) 163
EcoO109I RGGNCCY 1 cut(s) 220
EcoT22I ATGCAT 1 cut(s) 248
EcoT38I GRGCYC 1 cut(s) 224
FaiI YATR 1 cut(s) 240
FriOI GRGCYC 1 cut(s) 224
FspBI CTAG 1 cut(s) 72
HaeIII GGCC 1 cut(s) 222
HgaI GACGC 1 cut(s) 274
HindIII AAGCTT 1 cut(s) 307
Hpy166II GTNNAC 2 cut(s) 152, 259
Hpy188III TCNNGA 1 cut(s) 345
Hpy8I GTNNAC 2 cut(s) 152, 259
HpyAV CCTTC 1 cut(s) 169
HpyCH4V TGCA 4 cut(s) 231, 246, 278, 339
HpyF10VI GCNNNNNNNGC 1 cut(s) 228
LmnI GCTCC 1 cut(s) 59
LpnPI CCDG 5 cut(s) 128, 151, 237, 264, 275
LweI GCATC 1 cut(s) 265
MaeI CTAG 1 cut(s) 72
MboII GAAGA 2 cut(s) 215, 218
MhlI GDGCHC 1 cut(s) 224
MluCI AATT 6 cut(s) 102, 145, 179, 314, 319, 328
MnlI CCTC 2 cut(s) 180, 190
Mph1103I ATGCAT 1 cut(s) 248
MseI TTAA 3 cut(s) 60, 182, 317
Mva1269I GAATGC 2 cut(s) 233, 248
MwoI GCNNNNNNNGC 1 cut(s) 228
NlaIV GGNNCC 1 cut(s) 222
NsiI ATGCAT 1 cut(s) 248
PctI GAATGC 2 cut(s) 233, 248
PshBI ATTAAT 1 cut(s) 182
PspN4I GGNNCC 1 cut(s) 222
PspOMI GGGCCC 1 cut(s) 220
PspPI GGNCC 2 cut(s) 220, 221
RsaI GTAC 3 cut(s) 151, 171, 283
RsaNI GTAC 3 cut(s) 150, 170, 282
SaqAI TTAA 3 cut(s) 60, 182, 317
Sau96I GGNCC 2 cut(s) 220, 221
SduI GDGCHC 1 cut(s) 224
SetI ASST 6 cut(s) 21, 73, 161, 201, 283, 311
SfaNI GCATC 1 cut(s) 265
SgeI CNNG 6 cut(s) 84, 127, 178, 236, 274, 291
Sse9I AATT 6 cut(s) 102, 145, 179, 314, 319, 328
SspMI CTAG 1 cut(s) 72
TaqI TCGA 1 cut(s) 10
TasI AATT 6 cut(s) 102, 145, 179, 314, 319, 328
TatI WGTACW 1 cut(s) 149
Tru1I TTAA 3 cut(s) 60, 182, 317
Tru9I TTAA 3 cut(s) 60, 182, 317
TspDTI ATGAA 1 cut(s) 255
VspI ATTAAT 1 cut(s) 182
XagI CCTNNNNNAGG 1 cut(s) 163
XcmI CCANNNNNNNNNTGG 1 cut(s) 231
XspI CTAG 1 cut(s) 72
Zsp2I ATGCAT 1 cut(s) 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.