Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0019031

Physical Location & Seq

Genomic Coordinates Reverse (-)

10445040 .. 10445884

Gene Structure 845 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG140600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGAGGGAAAGTGAGGTTGAAGAAGATAAAGAAAAGGGCCCAGAATGCAGATGGTATGAATGCATTGCCATTGTAAACCAGACGCAAACAGATGCAGAAATCACTTACAGTGACTTGACGGTGAACTCGAGGTTCTGGTGGGGCGGAGGCGATGACGTACTGGCAGCCTGTACCGGCCGGCAAGGCGGCCGCCTCTTCGAAAACGCCGACGACCGGTTCCAGATCAAGATGGAGAAGCCGATCTACGACACGGTCGACGAGGACGAGTACGACGCGATCATCGCCAAGCGCTGCGAGGAGTTCGGGGACTTCATCGAGGACGACGACAGCCTAGGGTACCGCGACGACGGCGAGGAAGAGGGATGGACCCGCCGCGGGCTTCCGACGTCGTCGGATGAATCAGAAGGTGATATGAGGCCCAGGAGGAGGAAGAATGTGGAGAAGAAGGAGAAGGAGCCGCGGCCCAAAAAGCCCAATTCGTCGCTTACGGCGGCGGCGGCGATGATGGGGAAGCAGAGGCTTTCGTCGATGTTCACGTCTTCGATGTTTAATAAAAGTAGGGATAGTGACAAGGCCAAAGGATTGTCTTGTGATAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000428 GO:0000726 GO:0003674 GO:0003824 GO:0003887 GO:0003896 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005658 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006269 GO:0006270 GO:0006271 GO:0006272 GO:0006273 GO:0006281 GO:0006302 GO:0006303 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009965 GO:0009987 GO:0010016 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0022616 GO:0030880 GO:0030894 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0032993 GO:0033554 GO:0034061 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051716 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0071897 GO:0090304 GO:0097747 GO:0099402 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1905392 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 map00230 map00240 map01100 map03030

Pfam Domains

Protein Families

DNA_pol_B DNA_pol_B_exo1 DNA_pol_alpha_N zf-DNA_Pol

Protein Analysis

199

Amino Acids

22.73

Weight (kDa)

4.67

Isoelectric Point (pI)

60.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_pol_alpha_N	PF12254	70 - 120	4.2e-15	DNA polymerase alpha subunit p180 N terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019031)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0301591
rosa_samantha	Rh2AG507100 Rh2CG492700 Rh4BG366200 Rh4DG083400 Rh5BG113700 Rh6AG319700 Rh7BG140600 Rh7BG461600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	389
Acc65I	GGTACC	1 cut(s)	336
AccB1I	GGYRCC	1 cut(s)	336
AccI	GTMKAC	1 cut(s)	255
AccII	CGCG	4 cut(s)	275, 342, 375, 460
AcoI	YGGCCR	2 cut(s)	175, 187
AcyI	GRCGYC	1 cut(s)	386
AfaI	GTAC	4 cut(s)	159, 172, 269, 338
AfeI	AGCGCT	1 cut(s)	290
AfiI	CCNNNNNNNGG	3 cut(s)	213, 375, 426
AgeI	ACCGGT	1 cut(s)	213
AgsI	TTSAA	1 cut(s)	20
AjiI	CACGTC	1 cut(s)	537
AjnI	CCWGG	1 cut(s)	419
AluBI	AGCT	1 cut(s)	597
AluI	AGCT	1 cut(s)	597
Ama87I	CYCGRG	1 cut(s)	127
Aor51HI	AGCGCT	1 cut(s)	290
AoxI	GGCC	6 cut(s)	37, 175, 187, 416, 461, 573
ApaI	GGGCCC	1 cut(s)	41
ApeKI	GCWGC	2 cut(s)	164, 291
AsiGI	ACCGGT	1 cut(s)	213
Asp718I	GGTACC	1 cut(s)	336
AspA2I	CCTAGG	1 cut(s)	331
AspLEI	GCGC	1 cut(s)	291
AspS9I	GGNCC	5 cut(s)	37, 38, 366, 417, 462
AsuHPI	GGTGA	2 cut(s)	133, 419
AsuII	TTCGAA	1 cut(s)	198
AvaI	CYCGRG	1 cut(s)	127
AvaII	GGWCC	1 cut(s)	366
AvrII	CCTAGG	1 cut(s)	331
BaeGI	GKGCMC	1 cut(s)	41
BanI	GGYRCC	1 cut(s)	336
BanII	GRGCYC	1 cut(s)	41
BarI	GAAGNNNNNNTAC	2 cut(s)	227, 259
BbsI	GAAGAC	1 cut(s)	531
BbvI	GCAGC	2 cut(s)	176, 278
BccI	CCATC	4 cut(s)	45, 223, 357, 499
BceAI	ACGGC	2 cut(s)	364, 504
BciT130I	CCWGG	1 cut(s)	421
BfaI	CTAG	2 cut(s)	332, 598
BfoI	RGCGCY	1 cut(s)	292
BglI	GCCNNNNNGGC	1 cut(s)	183
BlnI	CCTAGG	1 cut(s)	331
Bme1390I	CCNGG	1 cut(s)	421
Bme18I	GGWCC	1 cut(s)	366
BmeT110I	CYCGRG	1 cut(s)	127
BmgBI	CACGTC	1 cut(s)	537
BmgT120I	GGNCC	5 cut(s)	37, 38, 366, 417, 462
BmiI	GGNNCC	5 cut(s)	39, 218, 338, 368, 456
BmrFI	CCNGG	1 cut(s)	421
BmsI	GCATC	1 cut(s)	82
BpiI	GAAGAC	1 cut(s)	531
Bpu14I	TTCGAA	1 cut(s)	198
BsaHI	GRCGYC	1 cut(s)	386
BsaJI	CCNNGG	4 cut(s)	331, 373, 419, 458
BsaWI	WCCGGW	1 cut(s)	213
Bsc4I	CCNNNNNNNGG	3 cut(s)	213, 375, 426
Bse118I	RCCGGY	3 cut(s)	173, 177, 213
Bse1I	ACTGG	1 cut(s)	165
Bse3DI	GCAATG	1 cut(s)	63
BseBI	CCWGG	1 cut(s)	421
BseDI	CCNNGG	4 cut(s)	331, 373, 419, 458
BseGI	GGATG	2 cut(s)	368, 400
BseLI	CCNNNNNNNGG	3 cut(s)	213, 375, 426
BseMI	GCAATG	1 cut(s)	63
BseNI	ACTGG	1 cut(s)	165
BseRI	GAGGAG	2 cut(s)	311, 439
BseSI	GKGCMC	1 cut(s)	41
BseX3I	CGGCCG	2 cut(s)	175, 187
BseXI	GCAGC	2 cut(s)	176, 278
Bsh1236I	CGCG	4 cut(s)	275, 342, 375, 460
Bsh1285I	CGRYCG	4 cut(s)	178, 190, 214, 255
BshFI	GGCC	6 cut(s)	39, 177, 189, 418, 463, 575
BshNI	GGYRCC	1 cut(s)	336
BshTI	ACCGGT	1 cut(s)	213
BsiEI	CGRYCG	4 cut(s)	178, 190, 214, 255
BsiHKCI	CYCGRG	1 cut(s)	127
BsiSI	CCGG	3 cut(s)	174, 178, 214
BslFI	GGGAC	1 cut(s)	320
BslI	CCNNNNNNNGG	3 cut(s)	213, 375, 426
BsmFI	GGGAC	1 cut(s)	320
BsmI	GAATGC	2 cut(s)	50, 65
BsnI	GGCC	6 cut(s)	39, 177, 189, 418, 463, 575
BsoBI	CYCGRG	1 cut(s)	127
Bsp119I	TTCGAA	1 cut(s)	198
Bsp120I	GGGCCC	1 cut(s)	37
Bsp1286I	GDGCHC	1 cut(s)	41
Bsp143I	GATC	3 cut(s)	222, 240, 276
BspANI	GGCC	6 cut(s)	39, 177, 189, 418, 463, 575
BspFNI	CGCG	4 cut(s)	275, 342, 375, 460
BspLI	GGNNCC	5 cut(s)	39, 218, 338, 368, 456
BspT104I	TTCGAA	1 cut(s)	198
BspT107I	GGYRCC	1 cut(s)	336
BsrDI	GCAATG	1 cut(s)	63
BsrFI	RCCGGY	3 cut(s)	173, 177, 213
BsrI	ACTGG	1 cut(s)	165
BssAI	RCCGGY	3 cut(s)	173, 177, 213
BssECI	CCNNGG	4 cut(s)	331, 373, 419, 458
BssMI	GATC	3 cut(s)	222, 240, 276
BssNI	GRCGYC	1 cut(s)	386
BssT1I	CCWWGG	1 cut(s)	331
Bst2UI	CCWGG	1 cut(s)	421
Bst4CI	ACNGT	3 cut(s)	110, 121, 253
Bst6I	CTCTTC	2 cut(s)	200, 351
BstACI	GRCGYC	1 cut(s)	386
BstBI	TTCGAA	1 cut(s)	198
BstC8I	GCNNGC	2 cut(s)	179, 377
BstDSI	CCRYGG	2 cut(s)	373, 458
BstF5I	GGATG	2 cut(s)	368, 400
BstFNI	CGCG	4 cut(s)	275, 342, 375, 460
BstH2I	RGCGCY	1 cut(s)	292
BstHHI	GCGC	1 cut(s)	291
BstKTI	GATC	3 cut(s)	225, 243, 279
BstMBI	GATC	3 cut(s)	222, 240, 276
BstMCI	CGRYCG	4 cut(s)	178, 190, 214, 255
BstMWI	GCNNNNNNNGC	6 cut(s)	45, 183, 281, 348, 469, 497
BstNI	CCWGG	1 cut(s)	421
BstSCI	CCNGG	1 cut(s)	419
BstSLI	GKGCMC	1 cut(s)	41
BstUI	CGCG	4 cut(s)	275, 342, 375, 460
BstV1I	GCAGC	2 cut(s)	176, 278
BstV2I	GAAGAC	1 cut(s)	531
BstZI	CGGCCG	2 cut(s)	175, 187
BsuRI	GGCC	6 cut(s)	39, 177, 189, 418, 463, 575
BtgI	CCRYGG	2 cut(s)	373, 458
BtgZI	GCGATG	3 cut(s)	165, 265, 515
BtrI	CACGTC	1 cut(s)	537
BtsCI	GGATG	2 cut(s)	368, 400
BtsIMutI	CAGTG	1 cut(s)	115
Cac8I	GCNNGC	2 cut(s)	179, 377
CciNI	GCGGCCGC	1 cut(s)	187
CfoI	GCGC	1 cut(s)	291
Cfr10I	RCCGGY	3 cut(s)	173, 177, 213
Cfr13I	GGNCC	5 cut(s)	37, 38, 366, 417, 462
Cfr42I	CCGCGG	2 cut(s)	376, 461
CseI	GACGC	2 cut(s)	91, 281
Csp6I	GTAC	4 cut(s)	158, 171, 268, 337
CspAI	ACCGGT	1 cut(s)	213
CviQI	GTAC	4 cut(s)	158, 171, 268, 337
DpnI	GATC	3 cut(s)	224, 242, 278
DpnII	GATC	3 cut(s)	222, 240, 276
EaeI	YGGCCR	2 cut(s)	175, 187
EagI	CGGCCG	2 cut(s)	175, 187
Eam1104I	CTCTTC	2 cut(s)	200, 351
EarI	CTCTTC	2 cut(s)	200, 351
EciI	GGCGGA	1 cut(s)	159
EclXI	CGGCCG	2 cut(s)	175, 187
Eco130I	CCWWGG	1 cut(s)	331
Eco24I	GRGCYC	1 cut(s)	41
Eco47I	GGWCC	1 cut(s)	366
Eco47III	AGCGCT	1 cut(s)	290
Eco52I	CGGCCG	2 cut(s)	175, 187
Eco88I	CYCGRG	1 cut(s)	127
EcoO109I	RGGNCCY	1 cut(s)	37
EcoRII	CCWGG	1 cut(s)	419
EcoT14I	CCWWGG	1 cut(s)	331
EcoT22I	ATGCAT	1 cut(s)	65
EcoT38I	GRGCYC	1 cut(s)	41
ErhI	CCWWGG	1 cut(s)	331
FaiI	YATR	2 cut(s)	57, 413
FaqI	GGGAC	1 cut(s)	320
FauI	CCCGC	2 cut(s)	368, 377
FblI	GTMKAC	1 cut(s)	255
FokI	GGATG	2 cut(s)	375, 407
FriOI	GRGCYC	1 cut(s)	41
FspBI	CTAG	2 cut(s)	332, 598
GlaI	GCGC	1 cut(s)	290
HaeII	RGCGCY	1 cut(s)	292
HaeIII	GGCC	6 cut(s)	39, 177, 189, 418, 463, 575
HapII	CCGG	3 cut(s)	174, 178, 214
HgaI	GACGC	2 cut(s)	91, 281
HhaI	GCGC	1 cut(s)	291
Hin1I	GRCGYC	1 cut(s)	386
Hin6I	GCGC	1 cut(s)	289
HinP1I	GCGC	1 cut(s)	289
HincII	GTYRAC	1 cut(s)	256
HindII	GTYRAC	1 cut(s)	256
HinfI	GANTC	1 cut(s)	398
HpaII	CCGG	3 cut(s)	174, 178, 214
HphI	GGTGA	2 cut(s)	133, 419
Hpy166II	GTNNAC	4 cut(s)	76, 124, 256, 534
Hpy188I	TCNGA	3 cut(s)	384, 394, 403
Hpy188III	TCNNGA	2 cut(s)	220, 226
Hpy8I	GTNNAC	4 cut(s)	76, 124, 256, 534
HpyAV	CCTTC	3 cut(s)	398, 439, 445
HpyCH4III	ACNGT	3 cut(s)	110, 121, 253
HpyCH4IV	ACGT	3 cut(s)	156, 386, 536
HpyCH4V	TGCA	3 cut(s)	48, 63, 95
HpyF10VI	GCNNNNNNNGC	6 cut(s)	45, 183, 281, 348, 469, 497
HpySE526I	ACGT	3 cut(s)	156, 386, 536
Hsp92I	GRCGYC	1 cut(s)	386
HspAI	GCGC	1 cut(s)	289
KpnI	GGTACC	1 cut(s)	340
KroI	GCCGGC	1 cut(s)	177
KroNI	GCCGGC	1 cut(s)	179
KspI	CCGCGG	2 cut(s)	376, 461
Kzo9I	GATC	3 cut(s)	222, 240, 276
LmnI	GCTCC	1 cut(s)	454
Lsp1109I	GCAGC	2 cut(s)	176, 278
LweI	GCATC	1 cut(s)	82
MaeI	CTAG	2 cut(s)	332, 598
MaeII	ACGT	3 cut(s)	156, 386, 536
MaeIII	GTNAC	2 cut(s)	110, 566
MalI	GATC	3 cut(s)	224, 242, 278
MboI	GATC	3 cut(s)	222, 240, 276
MboII	GAAGA	7 cut(s)	32, 35, 187, 368, 442, 454, 531
MhlI	GDGCHC	1 cut(s)	41
MluCI	AATT	1 cut(s)	475
MmeI	TCCRAC	2 cut(s)	372, 407
Mph1103I	ATGCAT	1 cut(s)	65
MroNI	GCCGGC	1 cut(s)	177
MseI	TTAA	1 cut(s)	549
MspA1I	CMGCKG	2 cut(s)	375, 460
MspI	CCGG	3 cut(s)	174, 178, 214
MspR9I	CCNGG	1 cut(s)	421
Mva1269I	GAATGC	2 cut(s)	50, 65
MvaI	CCWGG	1 cut(s)	421
MvnI	CGCG	4 cut(s)	275, 342, 375, 460
MwoI	GCNNNNNNNGC	6 cut(s)	45, 183, 281, 348, 469, 497
NaeI	GCCGGC	1 cut(s)	179
NdeII	GATC	3 cut(s)	222, 240, 276
NgoMIV	GCCGGC	1 cut(s)	177
NlaIV	GGNNCC	5 cut(s)	39, 218, 338, 368, 456
NmuCI	GTSAC	2 cut(s)	110, 566
NotI	GCGGCCGC	1 cut(s)	187
NsiI	ATGCAT	1 cut(s)	65
NspV	TTCGAA	1 cut(s)	198
PaeR7I	CTCGAG	1 cut(s)	127
PcsI	WCGNNNNNNNCGW	6 cut(s)	125, 204, 252, 261, 321, 533
PctI	GAATGC	2 cut(s)	50, 65
PdiI	GCCGGC	1 cut(s)	179
PfeI	GAWTC	1 cut(s)	398
PflFI	GACNNNGTC	2 cut(s)	251, 388
PinAI	ACCGGT	1 cut(s)	213
Psp6I	CCWGG	1 cut(s)	419
PspGI	CCWGG	1 cut(s)	419
PspN4I	GGNNCC	5 cut(s)	39, 218, 338, 368, 456
PspOMI	GGGCCC	1 cut(s)	37
PspPI	GGNCC	5 cut(s)	37, 38, 366, 417, 462
PspXI	VCTCGAGB	1 cut(s)	127
PsyI	GACNNNGTC	2 cut(s)	251, 388
RsaI	GTAC	4 cut(s)	159, 172, 269, 338
RsaNI	GTAC	4 cut(s)	158, 171, 268, 337
SacII	CCGCGG	2 cut(s)	376, 461
SalI	GTCGAC	1 cut(s)	254
SaqAI	TTAA	1 cut(s)	549
Sau3AI	GATC	3 cut(s)	222, 240, 276
Sau96I	GGNCC	5 cut(s)	37, 38, 366, 417, 462
ScrFI	CCNGG	1 cut(s)	421
SduI	GDGCHC	1 cut(s)	41
SetI	ASST	7 cut(s)	18, 134, 159, 389, 409, 539, 599
SfaNI	GCATC	1 cut(s)	82
Sfr274I	CTCGAG	1 cut(s)	127
Sfr303I	CCGCGG	2 cut(s)	376, 461
SfuI	TTCGAA	1 cut(s)	198
SgrBI	CCGCGG	2 cut(s)	376, 461
SinI	GGWCC	1 cut(s)	366
SlaI	CTCGAG	1 cut(s)	127
SmlI	CTYRAG	1 cut(s)	127
SmoI	CTYRAG	1 cut(s)	127
Sse9I	AATT	1 cut(s)	475
SspMI	CTAG	2 cut(s)	332, 598
StyD4I	CCNGG	1 cut(s)	419
StyI	CCWWGG	1 cut(s)	331
TaaI	ACNGT	3 cut(s)	110, 121, 253
TaiI	ACGT	3 cut(s)	159, 389, 539
TaqI	TCGA	6 cut(s)	128, 198, 255, 315, 527, 542
TasI	AATT	1 cut(s)	475
TauI	GCSGC	8 cut(s)	189, 192, 375, 460, 463, 494, 497, 500
TfiI	GAWTC	1 cut(s)	398
Tru1I	TTAA	1 cut(s)	549
Tru9I	TTAA	1 cut(s)	549
TscAI	CASTG	1 cut(s)	115
TseFI	GTSAC	2 cut(s)	110, 566
TseI	GCWGC	2 cut(s)	164, 291
Tsp45I	GTSAC	2 cut(s)	110, 566
TspDTI	ATGAA	3 cut(s)	72, 301, 411
TspRI	CASTG	1 cut(s)	115
Tth111I	GACNNNGTC	2 cut(s)	251, 388
VpaK11BI	GGWCC	1 cut(s)	366
XcmI	CCANNNNNNNNNTGG	1 cut(s)	48
XhoI	CTCGAG	1 cut(s)	127
XmaJI	CCTAGG	1 cut(s)	331
XmiI	GTMKAC	1 cut(s)	255
XspI	CTAG	2 cut(s)	332, 598
ZraI	GACGTC	1 cut(s)	387
Zsp2I	ATGCAT	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.