RchiOBHm_Chr6g0306461

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0016226
Physical Location & Seq
Reverse (-)
65157197 .. 65157727
531 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 531 bp
ATGAAGAAACGTGGCAAGATCCTAGGCAAGTCGGTAAACGACTTCATACTCCGCCACCACACCACCCTCGACTCAGTCCGCTGCCGCTCACTCGACGACGTGCACGTGTCATTCGTGTACCCCATGGAGTACGAGTTCAGCTGCAGCAGCAGCCCACCACACCACCAACGGTCGCGTACACCCGGCCACCTTAGCAGCAGCAAGCGCAACAACATCAACTACTACAACGGCCGTTATCATCACCAGCACTCGCGGCGGTCCGTTTACGTGCCGATGATGTGCGAAGACGTTTTGGGGAGTAAGAATGTGTCCTTCTGCGGCGGTGACGTGGTGGAGCCGCTGCGGCTGAGGCCGAGGGTGAGGAAGGTTAGGATAACGGAGTGGGAGCCGTTATTTCCGTTGAACACCAGTGAAGAAGAGGAGGAGGAGGAGGAGTGGCATGTGGACAAGGCAGCGCAGGAATTCATCGACAAGTTTTATCGGGATCTAATGTTGCAAAAGTGGAATTCGGTAGCAGATCGATGCTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

176

Amino Acids

20.86

Weight (kDa)

8.27

Isoelectric Point (pI)

65.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 147 - 171 1e-05 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016226)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32860
fragaria_vesca FvH4_2g35430
malus_domestica MD08G1111800.v1.1 MD15G1091300.v1.1
prunus_persica Prupe.1G446200_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0306461
rosa_laevigata RLG00000010795
rosa_multiflora Rmu_sc0002971.1_g000016
rosa_roxburghii Rroxscaffold_7G00161750
rosa_rugosa Rorug06G0349700
rosa_samantha Rh6AG461800 Rh6BG439200 Rh6CG476000 Rh6DG462700
rosa_wichuraiana Rw6G040250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 87
AccII CGCG 2 cut(s) 175, 253
AciI CCGC 9 cut(s) 52, 79, 85, 253, 256, 318, 321, 338, 343
AclWI GGATC 2 cut(s) 13, 492
AcoI YGGCCR 2 cut(s) 184, 229
AcsI RAATTY 2 cut(s) 461, 505
AcvI CACGTG 1 cut(s) 106
AfaI GTAC 3 cut(s) 119, 131, 178
AflIII ACRYGT 1 cut(s) 105
AgsI TTSAA 1 cut(s) 403
AjiI CACGTC 2 cut(s) 100, 328
AloI GAACNNNNNNTCC 2 cut(s) 119, 151
AluBI AGCT 1 cut(s) 141
AluI AGCT 1 cut(s) 141
Alw21I GWGCWC 1 cut(s) 105
Alw44I GTGCAC 1 cut(s) 101
AlwI GGATC 2 cut(s) 13, 492
AoxI GGCC 3 cut(s) 184, 229, 350
ApaLI GTGCAC 1 cut(s) 101
ApeKI GCWGC 9 cut(s) 81, 141, 144, 147, 150, 195, 198, 340, 452
ApoI RAATTY 2 cut(s) 461, 505
AspA2I CCTAGG 1 cut(s) 22
AspLEI GCGC 2 cut(s) 207, 457
AspS9I GGNCC 1 cut(s) 258
AsuC2I CCSGG 1 cut(s) 183
AsuHPI GGTGA 3 cut(s) 233, 335, 370
AvaII GGWCC 1 cut(s) 258
AvrII CCTAGG 1 cut(s) 22
BaeGI GKGCMC 1 cut(s) 105
BbrPI CACGTG 1 cut(s) 106
BbsI GAAGAC 1 cut(s) 291
Bbv12I GWGCWC 1 cut(s) 105
BbvCI CCTCAGC 1 cut(s) 347
BbvI GCAGC 9 cut(s) 68, 128, 156, 159, 162, 207, 210, 327, 464
BceAI ACGGC 3 cut(s) 216, 244, 373
BcnI CCSGG 1 cut(s) 183
BfaI CTAG 1 cut(s) 23
BfmI CTRYAG 1 cut(s) 142
BglI GCCNNNNNGGC 1 cut(s) 343
BlnI CCTAGG 1 cut(s) 22
Bme1390I CCNGG 1 cut(s) 183
Bme18I GGWCC 1 cut(s) 258
BmgBI CACGTC 2 cut(s) 100, 328
BmgT120I GGNCC 1 cut(s) 258
BmiI GGNNCC 2 cut(s) 336, 387
BmrFI CCNGG 1 cut(s) 183
BmsI GCATC 1 cut(s) 512
BpiI GAAGAC 1 cut(s) 291
Bpu10I CCTNAGC 2 cut(s) 191, 347
BpuMI CCSGG 1 cut(s) 183
Bsa29I ATCGAT 1 cut(s) 520
BsaAI YACGTR 2 cut(s) 106, 268
BsaJI CCNNGG 3 cut(s) 22, 123, 353
BsaXI ACNNNNNCTCC 4 cut(s) 119, 149, 419, 449
Bse1I ACTGG 1 cut(s) 408
BseCI ATCGAT 1 cut(s) 520
BseDI CCNNGG 3 cut(s) 22, 123, 353
BseMII CTCAG 2 cut(s) 87, 338
BseNI ACTGG 1 cut(s) 408
BseRI GAGGAG 5 cut(s) 434, 437, 440, 443, 446
BseSI GKGCMC 1 cut(s) 105
BseX3I CGGCCG 1 cut(s) 229
BseXI GCAGC 9 cut(s) 68, 128, 156, 159, 162, 207, 210, 327, 464
Bsh1236I CGCG 2 cut(s) 175, 253
Bsh1285I CGRYCG 2 cut(s) 173, 232
BshFI GGCC 3 cut(s) 186, 231, 352
BshVI ATCGAT 1 cut(s) 520
BsiEI CGRYCG 2 cut(s) 173, 232
BsiHKAI GWGCWC 1 cut(s) 105
BsiSI CCGG 1 cut(s) 183
BsnI GGCC 3 cut(s) 186, 231, 352
Bsp1286I GDGCHC 1 cut(s) 105
Bsp143I GATC 3 cut(s) 18, 484, 517
Bsp19I CCATGG 1 cut(s) 123
BspACI CCGC 9 cut(s) 52, 79, 85, 253, 256, 318, 321, 338, 343
BspANI GGCC 3 cut(s) 186, 231, 352
BspCNI CTCAG 2 cut(s) 86, 339
BspDI ATCGAT 1 cut(s) 520
BspFNI CGCG 2 cut(s) 175, 253
BspLI GGNNCC 2 cut(s) 336, 387
BspMAI CTGCAG 1 cut(s) 146
BspPI GGATC 2 cut(s) 13, 492
BsrBI CCGCTC 1 cut(s) 87
BsrI ACTGG 1 cut(s) 408
BssECI CCNNGG 3 cut(s) 22, 123, 353
BssMI GATC 3 cut(s) 18, 484, 517
BssT1I CCWWGG 2 cut(s) 22, 123
Bst4CI ACNGT 1 cut(s) 171
Bst6I CTCTTC 1 cut(s) 411
BstBAI YACGTR 2 cut(s) 106, 268
BstC8I GCNNGC 1 cut(s) 203
BstDEI CTNAG 3 cut(s) 73, 191, 347
BstDSI CCRYGG 1 cut(s) 123
BstFNI CGCG 2 cut(s) 175, 253
BstHHI GCGC 2 cut(s) 207, 457
BstKTI GATC 3 cut(s) 21, 487, 520
BstMBI GATC 3 cut(s) 18, 484, 517
BstMCI CGRYCG 2 cut(s) 173, 232
BstMWI GCNNNNNNNGC 7 cut(s) 147, 150, 192, 204, 253, 343, 349
BstNSI RCATGY 1 cut(s) 443
BstSCI CCNGG 1 cut(s) 181
BstSFI CTRYAG 1 cut(s) 142
BstSLI GKGCMC 1 cut(s) 105
BstUI CGCG 2 cut(s) 175, 253
BstV1I GCAGC 9 cut(s) 68, 128, 156, 159, 162, 207, 210, 327, 464
BstV2I GAAGAC 1 cut(s) 291
BstX2I RGATCY 2 cut(s) 18, 484
BstYI RGATCY 2 cut(s) 18, 484
BstZI CGGCCG 1 cut(s) 229
Bsu15I ATCGAT 1 cut(s) 520
BsuRI GGCC 3 cut(s) 186, 231, 352
BsuTUI ATCGAT 1 cut(s) 520
BtgI CCRYGG 1 cut(s) 123
BtrI CACGTC 2 cut(s) 100, 328
BtsIMutI CAGTG 1 cut(s) 415
Cac8I GCNNGC 1 cut(s) 203
CfoI GCGC 2 cut(s) 207, 457
Cfr13I GGNCC 1 cut(s) 258
ClaI ATCGAT 1 cut(s) 520
CpoI CGGWCCG 1 cut(s) 258
Csp6I GTAC 3 cut(s) 118, 130, 177
CspI CGGWCCG 1 cut(s) 258
CviAII CATG 2 cut(s) 124, 440
CviJI RGCY 8 cut(s) 141, 153, 186, 231, 337, 346, 352, 388
CviKI_1 RGCY 8 cut(s) 141, 153, 186, 231, 337, 346, 352, 388
CviQI GTAC 3 cut(s) 118, 130, 177
DdeI CTNAG 3 cut(s) 73, 191, 347
DpnI GATC 3 cut(s) 20, 486, 519
DpnII GATC 3 cut(s) 18, 484, 517
EaeI YGGCCR 2 cut(s) 184, 229
EagI CGGCCG 1 cut(s) 229
Eam1104I CTCTTC 1 cut(s) 411
EarI CTCTTC 1 cut(s) 411
EciI GGCGGA 1 cut(s) 41
EclXI CGGCCG 1 cut(s) 229
Eco130I CCWWGG 2 cut(s) 22, 123
Eco47I GGWCC 1 cut(s) 258
Eco52I CGGCCG 1 cut(s) 229
Eco72I CACGTG 1 cut(s) 106
EcoRI GAATTC 2 cut(s) 461, 505
EcoT14I CCWWGG 2 cut(s) 22, 123
ErhI CCWWGG 2 cut(s) 22, 123
FaeI CATG 2 cut(s) 127, 443
FaiI YATR 3 cut(s) 47, 125, 441
FatI CATG 2 cut(s) 123, 439
FspBI CTAG 1 cut(s) 23
GlaI GCGC 2 cut(s) 206, 456
HaeIII GGCC 3 cut(s) 186, 231, 352
HapII CCGG 1 cut(s) 183
HhaI GCGC 2 cut(s) 207, 457
Hin1II CATG 2 cut(s) 127, 443
Hin6I GCGC 2 cut(s) 205, 455
HinP1I GCGC 2 cut(s) 205, 455
HinfI GANTC 1 cut(s) 71
HpaII CCGG 1 cut(s) 183
HphI GGTGA 3 cut(s) 233, 335, 370
Hpy166II GTNNAC 6 cut(s) 37, 103, 118, 179, 265, 445
Hpy188III TCNNGA 1 cut(s) 482
Hpy8I GTNNAC 6 cut(s) 37, 103, 118, 179, 265, 445
Hpy99I CGWCG 2 cut(s) 98, 101
HpyAV CCTTC 2 cut(s) 322, 358
HpyCH4III ACNGT 1 cut(s) 171
HpyCH4IV ACGT 6 cut(s) 10, 99, 105, 267, 288, 327
HpyCH4V TGCA 3 cut(s) 103, 144, 496
HpyF10VI GCNNNNNNNGC 7 cut(s) 147, 150, 192, 204, 253, 343, 349
HpyF3I CTNAG 3 cut(s) 73, 191, 347
HpySE526I ACGT 6 cut(s) 10, 99, 105, 267, 288, 327
Hsp92II CATG 2 cut(s) 127, 443
HspAI GCGC 2 cut(s) 205, 455
Kzo9I GATC 3 cut(s) 18, 484, 517
LmnI GCTCC 2 cut(s) 334, 385
LpnPI CCDG 4 cut(s) 196, 257, 421, 443
Lsp1109I GCAGC 9 cut(s) 68, 128, 156, 159, 162, 207, 210, 327, 464
LweI GCATC 1 cut(s) 512
MaeI CTAG 1 cut(s) 23
MaeII ACGT 6 cut(s) 10, 99, 105, 267, 288, 327
MaeIII GTNAC 1 cut(s) 323
MalI GATC 3 cut(s) 20, 486, 519
MbiI CCGCTC 1 cut(s) 87
MboI GATC 3 cut(s) 18, 484, 517
MboII GAAGA 4 cut(s) 16, 296, 425, 428
MflI RGATCY 2 cut(s) 18, 484
MhlI GDGCHC 1 cut(s) 105
MluCI AATT 2 cut(s) 461, 505
MlyI GAGTC 1 cut(s) 65
MnlI CCTC 9 cut(s) 77, 342, 348, 354, 412, 415, 418, 421, 424
MspA1I CMGCKG 3 cut(s) 81, 141, 340
MspI CCGG 1 cut(s) 183
MspR9I CCNGG 1 cut(s) 183
MvnI CGCG 2 cut(s) 175, 253
MwoI GCNNNNNNNGC 7 cut(s) 147, 150, 192, 204, 253, 343, 349
NciI CCSGG 1 cut(s) 183
NcoI CCATGG 1 cut(s) 123
NdeII GATC 3 cut(s) 18, 484, 517
NlaIII CATG 2 cut(s) 127, 443
NlaIV GGNNCC 2 cut(s) 336, 387
NmeAIII GCCGAG 1 cut(s) 378
NmuCI GTSAC 1 cut(s) 323
NspI RCATGY 1 cut(s) 443
PcsI WCGNNNNNNNCGW 2 cut(s) 102, 111
PflFI GACNNNGTC 1 cut(s) 74
PleI GAGTC 1 cut(s) 65
PmaCI CACGTG 1 cut(s) 106
PmlI CACGTG 1 cut(s) 106
PpsI GAGTC 1 cut(s) 65
Ppu21I YACGTR 2 cut(s) 106, 268
PspCI CACGTG 1 cut(s) 106
PspN4I GGNNCC 2 cut(s) 336, 387
PspPI GGNCC 1 cut(s) 258
PstI CTGCAG 1 cut(s) 146
PsuI RGATCY 2 cut(s) 18, 484
PsyI GACNNNGTC 1 cut(s) 74
PvuII CAGCTG 1 cut(s) 141
RsaI GTAC 3 cut(s) 119, 131, 178
RsaNI GTAC 3 cut(s) 118, 130, 177
Rsr2I CGGWCCG 1 cut(s) 258
RsrII CGGWCCG 1 cut(s) 258
Sau3AI GATC 3 cut(s) 18, 484, 517
Sau96I GGNCC 1 cut(s) 258
SchI GAGTC 1 cut(s) 65
ScrFI CCNGG 1 cut(s) 183
SduI GDGCHC 1 cut(s) 105
SetI ASST 9 cut(s) 13, 102, 108, 143, 192, 270, 291, 330, 369
SfaNI GCATC 1 cut(s) 512
SfcI CTRYAG 1 cut(s) 142
SinI GGWCC 1 cut(s) 258
Sse9I AATT 2 cut(s) 461, 505
SsiI CCGC 9 cut(s) 52, 79, 85, 253, 256, 318, 321, 338, 343
SspMI CTAG 1 cut(s) 23
StyD4I CCNGG 1 cut(s) 181
StyI CCWWGG 2 cut(s) 22, 123
TaaI ACNGT 1 cut(s) 171
TaiI ACGT 6 cut(s) 13, 102, 108, 270, 291, 330
TaqI TCGA 4 cut(s) 69, 93, 468, 520
TasI AATT 2 cut(s) 461, 505
TauI GCSGC 5 cut(s) 87, 256, 321, 340, 346
TscAI CASTG 1 cut(s) 415
TseFI GTSAC 1 cut(s) 323
TseI GCWGC 9 cut(s) 81, 141, 144, 147, 150, 195, 198, 340, 452
Tsp45I GTSAC 1 cut(s) 323
TspDTI ATGAA 3 cut(s) 17, 34, 454
TspGWI ACGGA 3 cut(s) 250, 387, 392
TspRI CASTG 1 cut(s) 415
Tth111I GACNNNGTC 1 cut(s) 74
VneI GTGCAC 1 cut(s) 101
VpaK11BI GGWCC 1 cut(s) 258
XapI RAATTY 2 cut(s) 461, 505
XceI RCATGY 1 cut(s) 443
XmaJI CCTAGG 1 cut(s) 22
XspI CTAG 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.