RchiOBHm_Chr6g0307101

Belongs to the peptidase S10 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0018487
Physical Location & Seq
Forward (+)
65609912 .. 65610681
770 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 426 bp
ATGAAGAATAATATATCACAACATTTATTAATGATGATGCAGGTTAATGATTTTGATCCATGCTCAAACAACTATGTCCAGACCTATCTAAATCTTAAGGAGGTGCAAGCAGCTCTTCATGTAAACCCTACTGTATGTGGTCAAACCGAATGGATGGGCAGCCCAATGACTGTCCTCCCTACAATACAAGAGCTCATAGGAAGTGGGATAAGCTTGTGGCTCTACAGGCCATGGTACTCTGATGAAGAGGTTGGAGGATATGTGGCTGGATACATAGGGCTGAAATTTGCGACGGTAAGAGGAGCTGGCCATGAGGTTCCTATCAGAAAGTATATGGGAATAATGTGTTATTTCCATTCATCCCTCAAAGAGATTTATATAGTGTTACATCCATGTACACAAAGGAAAGTAATCAATCCTATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S10

Protein Analysis

141

Amino Acids

16.04

Weight (kDa)

6.94

Isoelectric Point (pI)

26.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 75 - 110 2.6e-06 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018487)

Species Orthologous Gene IDs
malus_domestica MD15G1087200.v1.1
rosa_chinensis RchiOBHm_Chr6g0307101
rosa_multiflora Rmu_co8409487.1_g000001 Rmu_sc0001776.1_g000002
rosa_roxburghii Rroxscaffold_7G00161160 Rroxscaffold_7G00161170
rosa_rugosa Rorug06G0356900
rosa_samantha Rh6AG467500 Rh6BG432700 Rh6DG469500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 31
AclWI GGATC 1 cut(s) 50
AcoI YGGCCR 1 cut(s) 307
AcsI RAATTY 1 cut(s) 284
AfaI GTAC 2 cut(s) 236, 397
AflII CTTAAG 1 cut(s) 95
AluBI AGCT 4 cut(s) 113, 193, 213, 305
AluI AGCT 4 cut(s) 113, 193, 213, 305
Alw21I GWGCWC 1 cut(s) 195
AlwI GGATC 1 cut(s) 50
AoxI GGCC 2 cut(s) 227, 307
ApeKI GCWGC 2 cut(s) 110, 159
ApoI RAATTY 1 cut(s) 284
AseI ATTAAT 1 cut(s) 29
BalI TGGCCA 1 cut(s) 309
BanII GRGCYC 1 cut(s) 195
Bbv12I GWGCWC 1 cut(s) 195
BbvI GCAGC 2 cut(s) 122, 171
BccI CCATC 1 cut(s) 148
BciVI GTATCC 1 cut(s) 263
BfmI CTRYAG 1 cut(s) 223
BfrI CTTAAG 1 cut(s) 95
BfuAI ACCTGC 1 cut(s) 31
BfuI GTATCC 1 cut(s) 263
BisI GCNGC 2 cut(s) 111, 160
BlsI GCNGC 2 cut(s) 112, 161
BmiI GGNNCC 1 cut(s) 318
BmsI GCATC 1 cut(s) 27
BsaBI GATNNNNATC 1 cut(s) 54
BsaJI CCNNGG 1 cut(s) 230
BsaXI ACNNNNNCTCC 2 cut(s) 246, 276
Bse8I GATNNNNATC 1 cut(s) 54
BseDI CCNNGG 1 cut(s) 230
BseGI GGATG 3 cut(s) 159, 359, 388
BseJI GATNNNNATC 1 cut(s) 54
BseRI GAGGAG 1 cut(s) 315
BseXI GCAGC 2 cut(s) 122, 171
BshFI GGCC 2 cut(s) 229, 309
BsiHKAI GWGCWC 1 cut(s) 195
BsnI GGCC 2 cut(s) 229, 309
Bsp1286I GDGCHC 1 cut(s) 195
Bsp1407I TGTACA 1 cut(s) 395
Bsp143I GATC 1 cut(s) 55
Bsp19I CCATGG 1 cut(s) 230
BspANI GGCC 2 cut(s) 229, 309
BspLI GGNNCC 1 cut(s) 318
BspMI ACCTGC 1 cut(s) 31
BspPI GGATC 1 cut(s) 50
BspQI GCTCTTC 1 cut(s) 120
BspTI CTTAAG 1 cut(s) 95
BsrGI TGTACA 1 cut(s) 395
BssECI CCNNGG 1 cut(s) 230
BssMI GATC 1 cut(s) 55
BssT1I CCWWGG 1 cut(s) 230
Bst4CI ACNGT 3 cut(s) 133, 172, 295
Bst6I CTCTTC 2 cut(s) 120, 240
BstAFI CTTAAG 1 cut(s) 95
BstAUI TGTACA 1 cut(s) 395
BstC8I GCNNGC 2 cut(s) 108, 307
BstDSI CCRYGG 1 cut(s) 230
BstF5I GGATG 3 cut(s) 159, 359, 388
BstKTI GATC 1 cut(s) 58
BstMBI GATC 1 cut(s) 55
BstMWI GCNNNNNNNGC 1 cut(s) 226
BstSFI CTRYAG 1 cut(s) 223
BstV1I GCAGC 2 cut(s) 122, 171
BsuI GTATCC 1 cut(s) 263
BsuRI GGCC 2 cut(s) 229, 309
BtgI CCRYGG 1 cut(s) 230
BtsCI GGATG 3 cut(s) 159, 359, 388
BveI ACCTGC 1 cut(s) 31
Cac8I GCNNGC 2 cut(s) 108, 307
Csp6I GTAC 2 cut(s) 235, 396
CviAII CATG 5 cut(s) 60, 119, 231, 311, 393
CviQI GTAC 2 cut(s) 235, 396
DpnI GATC 1 cut(s) 57
DpnII GATC 1 cut(s) 55
EaeI YGGCCR 1 cut(s) 307
Eam1104I CTCTTC 2 cut(s) 120, 240
EarI CTCTTC 2 cut(s) 120, 240
Ecl136II GAGCTC 1 cut(s) 193
Eco130I CCWWGG 1 cut(s) 230
Eco24I GRGCYC 1 cut(s) 195
Eco53kI GAGCTC 1 cut(s) 193
EcoICRI GAGCTC 1 cut(s) 193
EcoT14I CCWWGG 1 cut(s) 230
EcoT38I GRGCYC 1 cut(s) 195
ErhI CCWWGG 1 cut(s) 230
FaeI CATG 5 cut(s) 63, 122, 234, 314, 396
FalI AAGNNNNNCTT 2 cut(s) 99, 131
FatI CATG 5 cut(s) 59, 118, 230, 310, 392
Fnu4HI GCNGC 2 cut(s) 111, 160
FokI GGATG 3 cut(s) 166, 346, 375
FriOI GRGCYC 1 cut(s) 195
Fsp4HI GCNGC 2 cut(s) 111, 160
GluI GCNGC 2 cut(s) 111, 160
HaeIII GGCC 2 cut(s) 229, 309
Hin1II CATG 5 cut(s) 63, 122, 234, 314, 396
HindIII AAGCTT 1 cut(s) 211
Hpy166II GTNNAC 2 cut(s) 124, 398
Hpy188I TCNGA 2 cut(s) 241, 326
Hpy188III TCNNGA 1 cut(s) 79
Hpy8I GTNNAC 2 cut(s) 124, 398
Hpy99I CGWCG 1 cut(s) 295
HpyCH4III ACNGT 3 cut(s) 133, 172, 295
HpyCH4V TGCA 2 cut(s) 40, 106
HpyF10VI GCNNNNNNNGC 1 cut(s) 226
Hsp92II CATG 5 cut(s) 63, 122, 234, 314, 396
Kzo9I GATC 1 cut(s) 55
LguI GCTCTTC 1 cut(s) 120
LmnI GCTCC 1 cut(s) 302
LpnPI CCDG 5 cut(s) 26, 92, 211, 252, 291
Lsp1109I GCAGC 2 cut(s) 122, 171
LweI GCATC 1 cut(s) 27
MaeIII GTNAC 1 cut(s) 384
MalI GATC 1 cut(s) 57
MboI GATC 1 cut(s) 55
MboII GAAGA 3 cut(s) 16, 107, 257
MhlI GDGCHC 1 cut(s) 195
MlsI TGGCCA 1 cut(s) 309
MluCI AATT 1 cut(s) 284
MluNI TGGCCA 1 cut(s) 309
MmeI TCCRAC 1 cut(s) 232
MnlI CCTC 7 cut(s) 94, 185, 241, 248, 293, 307, 374
Mox20I TGGCCA 1 cut(s) 309
MscI TGGCCA 1 cut(s) 309
MseI TTAA 3 cut(s) 29, 45, 96
Msp20I TGGCCA 1 cut(s) 309
MspCI CTTAAG 1 cut(s) 95
MwoI GCNNNNNNNGC 1 cut(s) 226
NcoI CCATGG 1 cut(s) 230
NdeII GATC 1 cut(s) 55
NlaIII CATG 5 cut(s) 63, 122, 234, 314, 396
NlaIV GGNNCC 1 cut(s) 318
PciSI GCTCTTC 1 cut(s) 120
PkrI GCNGC 2 cut(s) 112, 161
PshBI ATTAAT 1 cut(s) 29
Psp124BI GAGCTC 1 cut(s) 195
PspN4I GGNNCC 1 cut(s) 318
RsaI GTAC 2 cut(s) 236, 397
RsaNI GTAC 2 cut(s) 235, 396
SacI GAGCTC 1 cut(s) 195
SapI GCTCTTC 1 cut(s) 120
SaqAI TTAA 3 cut(s) 29, 45, 96
SatI GCNGC 2 cut(s) 111, 160
Sau3AI GATC 1 cut(s) 55
SduI GDGCHC 1 cut(s) 195
SetI ASST 9 cut(s) 45, 86, 105, 115, 195, 215, 252, 307, 318
SfaNI GCATC 1 cut(s) 27
SfcI CTRYAG 1 cut(s) 223
SmlI CTYRAG 1 cut(s) 95
SmoI CTYRAG 1 cut(s) 95
Sse9I AATT 1 cut(s) 284
SstI GAGCTC 1 cut(s) 195
StyI CCWWGG 1 cut(s) 230
TaaI ACNGT 3 cut(s) 133, 172, 295
TasI AATT 1 cut(s) 284
TatI WGTACW 1 cut(s) 395
Tru1I TTAA 3 cut(s) 29, 45, 96
Tru9I TTAA 3 cut(s) 29, 45, 96
TseI GCWGC 2 cut(s) 110, 159
TspDTI ATGAA 4 cut(s) 17, 107, 258, 348
Vha464I CTTAAG 1 cut(s) 95
VspI ATTAAT 1 cut(s) 29
XapI RAATTY 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.