RchiOBHm_Chr5g0002091

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0017934
Physical Location & Seq
Reverse (-)
1165599 .. 1166198
600 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 480 bp
ATGGCACACCGGGCCGGTCGACCCGGACCCAACCGGAGAGCGCGCAACCACCGCAACCGTCCACTCGCCCCCGATGCCGAGGATTCCCACGCGCTGCCGAGTTCCGACTCGGACAGCTCCTCCGAATCGGACGGCGAGTCGGCCCGCCTCTCCGGCCTCGCCGCGAGCTTCCGAATCGTCTCGGAGTCGCTGCTGAGGATGGAGCAGACGGAGCTGGAGATGACCAAGGCGAGGGAGGCTATGCGGCTCGAGGCGGAGAAGCGGCGGCTCGAGTCGGAGGCCGAGTTGACTCAGATGCTGCTGCAGACTCAGCTCCAGATCGCGTCGTTGGTTTCGCGGCGGAGGAGGGACCATCCCAGCCGTAAACGGAAGCGAGCTGAGGAAGAAGGAGAAGAAGGAGGAGAAAACGACTCGTCGTCTTCGCCTAACAGTGAAGGAGCTTTGGCCTTGAGCTTGCTTCAGTGTAATTTGTTATTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

159

Amino Acids

17.66

Weight (kDa)

6.13

Isoelectric Point (pI)

82.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017934)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G22160 AT4G22160
fragaria_vesca FvH4_5g10500
malus_domestica MD10G1326900.v1.1
prunus_persica Prupe.4G015100_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0002091
rosa_laevigata RLG00000030993
rosa_multiflora Rmu_co8270171.1_g000001
rosa_rugosa Rorug04G0394400
rosa_samantha Rh5BG019200
rosa_wichuraiana Rw5G001550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 19
AccII CGCG 5 cut(s) 43, 92, 164, 323, 337
AciI CCGC 9 cut(s) 52, 145, 162, 244, 254, 262, 265, 337, 340
AcuI CTGAAG 1 cut(s) 443
AfiI CCNNNNNNNGG 1 cut(s) 231
AhdI GACNNNNNGTC 2 cut(s) 136, 415
AluBI AGCT 7 cut(s) 117, 168, 214, 313, 377, 440, 453
AluI AGCT 7 cut(s) 117, 168, 214, 313, 377, 440, 453
Alw26I GTCTC 1 cut(s) 184
AlwNI CAGNNNCTG 1 cut(s) 298
Ama87I CYCGRG 2 cut(s) 248, 269
AoxI GGCC 5 cut(s) 12, 141, 154, 279, 444
ApeKI GCWGC 4 cut(s) 94, 190, 298, 301
AspLEI GCGC 3 cut(s) 43, 45, 94
AspS9I GGNCC 4 cut(s) 12, 26, 142, 349
AsuC2I CCSGG 2 cut(s) 11, 24
AvaI CYCGRG 2 cut(s) 248, 269
AvaII GGWCC 2 cut(s) 26, 349
BbsI GAAGAC 1 cut(s) 411
BbvCI CCTCAGC 2 cut(s) 194, 378
BbvI GCAGC 4 cut(s) 81, 177, 285, 288
BccI CCATC 2 cut(s) 193, 360
BceAI ACGGC 2 cut(s) 148, 345
BcnI CCSGG 2 cut(s) 11, 24
BcoDI GTCTC 1 cut(s) 184
BfmI CTRYAG 1 cut(s) 302
BglI GCCNNNNNGGC 1 cut(s) 153
BisI GCNGC 9 cut(s) 95, 162, 191, 245, 263, 266, 299, 302, 338
BlsI GCNGC 9 cut(s) 96, 163, 192, 246, 264, 267, 300, 303, 339
Bme1390I CCNGG 2 cut(s) 11, 24
Bme18I GGWCC 2 cut(s) 26, 349
BmeRI GACNNNNNGTC 2 cut(s) 136, 415
BmeT110I CYCGRG 2 cut(s) 248, 269
BmgT120I GGNCC 4 cut(s) 12, 26, 142, 349
BmiI GGNNCC 2 cut(s) 28, 350
BmrFI CCNGG 2 cut(s) 11, 24
BmsI GCATC 2 cut(s) 64, 285
BpiI GAAGAC 1 cut(s) 411
BpmI CTGGAG 2 cut(s) 236, 299
Bpu10I CCTNAGC 2 cut(s) 194, 378
BpuEI CTTGAG 1 cut(s) 469
BpuMI CCSGG 2 cut(s) 11, 24
BsaJI CCNNGG 2 cut(s) 78, 225
BsaWI WCCGGW 1 cut(s) 33
BsaXI ACNNNNNCTCC 4 cut(s) 104, 134, 269, 299
Bsc4I CCNNNNNNNGG 1 cut(s) 231
Bse118I RCCGGY 1 cut(s) 14
BseDI CCNNGG 2 cut(s) 78, 225
BseGI GGATG 2 cut(s) 204, 352
BseLI CCNNNNNNNGG 1 cut(s) 231
BseMII CTCAG 4 cut(s) 185, 305, 323, 369
BsePI GCGCGC 1 cut(s) 41
BseRI GAGGAG 3 cut(s) 109, 358, 414
BseXI GCAGC 4 cut(s) 81, 177, 285, 288
BseYI CCCAGC 1 cut(s) 356
Bsh1236I CGCG 5 cut(s) 43, 92, 164, 323, 337
Bsh1285I CGRYCG 1 cut(s) 19
BshFI GGCC 5 cut(s) 14, 143, 156, 281, 446
BsiEI CGRYCG 1 cut(s) 19
BsiHKCI CYCGRG 2 cut(s) 248, 269
BsiSI CCGG 5 cut(s) 10, 15, 24, 34, 153
BslFI GGGAC 1 cut(s) 362
BslI CCNNNNNNNGG 1 cut(s) 231
BsmAI GTCTC 1 cut(s) 184
BsmBI CGTCTC 1 cut(s) 184
BsmFI GGGAC 1 cut(s) 362
BsnI GGCC 5 cut(s) 14, 143, 156, 281, 446
BsoBI CYCGRG 2 cut(s) 248, 269
Bsp143I GATC 1 cut(s) 318
BspACI CCGC 9 cut(s) 52, 145, 162, 244, 254, 262, 265, 337, 340
BspANI GGCC 5 cut(s) 14, 143, 156, 281, 446
BspCNI CTCAG 4 cut(s) 186, 304, 322, 370
BspFNI CGCG 5 cut(s) 43, 92, 164, 323, 337
BspLI GGNNCC 2 cut(s) 28, 350
BspMAI CTGCAG 1 cut(s) 306
BsrFI RCCGGY 1 cut(s) 14
BssAI RCCGGY 1 cut(s) 14
BssECI CCNNGG 2 cut(s) 78, 225
BssHII GCGCGC 1 cut(s) 41
BssMI GATC 1 cut(s) 318
BssT1I CCWWGG 1 cut(s) 225
Bst4CI ACNGT 2 cut(s) 59, 431
BstC8I GCNNGC 5 cut(s) 43, 145, 166, 375, 455
BstDEI CTNAG 4 cut(s) 194, 291, 309, 378
BstF5I GGATG 2 cut(s) 204, 352
BstFNI CGCG 5 cut(s) 43, 92, 164, 323, 337
BstHHI GCGC 3 cut(s) 43, 45, 94
BstKTI GATC 1 cut(s) 321
BstMAI GTCTC 1 cut(s) 184
BstMBI GATC 1 cut(s) 318
BstMCI CGRYCG 1 cut(s) 19
BstMWI GCNNNNNNNGC 7 cut(s) 11, 51, 74, 153, 211, 236, 310
BstSCI CCNGG 2 cut(s) 9, 22
BstSFI CTRYAG 1 cut(s) 302
BstUI CGCG 5 cut(s) 43, 92, 164, 323, 337
BstV1I GCAGC 4 cut(s) 81, 177, 285, 288
BstV2I GAAGAC 1 cut(s) 411
BsuRI GGCC 5 cut(s) 14, 143, 156, 281, 446
BtsCI GGATG 2 cut(s) 204, 352
BtsIMutI CAGTG 2 cut(s) 436, 467
Cac8I GCNNGC 5 cut(s) 43, 145, 166, 375, 455
CaiI CAGNNNCTG 1 cut(s) 298
CfoI GCGC 3 cut(s) 43, 45, 94
Cfr10I RCCGGY 1 cut(s) 14
Cfr13I GGNCC 4 cut(s) 12, 26, 142, 349
CseI GACGC 1 cut(s) 312
DdeI CTNAG 4 cut(s) 194, 291, 309, 378
DpnI GATC 1 cut(s) 320
DpnII GATC 1 cut(s) 318
DriI GACNNNNNGTC 2 cut(s) 136, 415
Eam1105I GACNNNNNGTC 2 cut(s) 136, 415
EciI GGCGGA 2 cut(s) 269, 355
Eco130I CCWWGG 1 cut(s) 225
Eco47I GGWCC 2 cut(s) 26, 349
Eco57I CTGAAG 1 cut(s) 443
Eco88I CYCGRG 2 cut(s) 248, 269
EcoT14I CCWWGG 1 cut(s) 225
ErhI CCWWGG 1 cut(s) 225
Esp3I CGTCTC 1 cut(s) 184
FaiI YATR 2 cut(s) 242, 478
FaqI GGGAC 1 cut(s) 362
FauI CCCGC 1 cut(s) 152
FblI GTMKAC 1 cut(s) 19
Fnu4HI GCNGC 9 cut(s) 95, 162, 191, 245, 263, 266, 299, 302, 338
FokI GGATG 2 cut(s) 211, 339
Fsp4HI GCNGC 9 cut(s) 95, 162, 191, 245, 263, 266, 299, 302, 338
GlaI GCGC 3 cut(s) 42, 44, 93
GluI GCNGC 9 cut(s) 95, 162, 191, 245, 263, 266, 299, 302, 338
GsaI CCCAGC 1 cut(s) 360
GsuI CTGGAG 2 cut(s) 236, 299
HaeIII GGCC 5 cut(s) 14, 143, 156, 281, 446
HapII CCGG 5 cut(s) 10, 15, 24, 34, 153
HgaI GACGC 1 cut(s) 312
HhaI GCGC 3 cut(s) 43, 45, 94
Hin6I GCGC 3 cut(s) 41, 43, 92
HinP1I GCGC 3 cut(s) 41, 43, 92
HincII GTYRAC 2 cut(s) 20, 288
HindII GTYRAC 2 cut(s) 20, 288
HpaII CCGG 5 cut(s) 10, 15, 24, 34, 153
Hpy166II GTNNAC 4 cut(s) 20, 62, 288, 365
Hpy188I TCNGA 8 cut(s) 106, 112, 124, 130, 173, 184, 277, 294
Hpy188III TCNNGA 1 cut(s) 316
Hpy8I GTNNAC 4 cut(s) 20, 62, 288, 365
Hpy99I CGWCG 2 cut(s) 328, 418
HpyAV CCTTC 3 cut(s) 380, 389, 428
HpyCH4III ACNGT 2 cut(s) 59, 431
HpyCH4V TGCA 1 cut(s) 304
HpyF10VI GCNNNNNNNGC 7 cut(s) 11, 51, 74, 153, 211, 236, 310
HpyF3I CTNAG 4 cut(s) 194, 291, 309, 378
HspAI GCGC 3 cut(s) 41, 43, 92
Kzo9I GATC 1 cut(s) 318
LmnI GCTCC 5 cut(s) 122, 202, 211, 318, 437
LpnPI CCDG 8 cut(s) 23, 28, 37, 47, 166, 200, 329, 370
Lsp1109I GCAGC 4 cut(s) 81, 177, 285, 288
LweI GCATC 2 cut(s) 64, 285
MalI GATC 1 cut(s) 320
MboI GATC 1 cut(s) 318
MboII GAAGA 3 cut(s) 395, 404, 411
MluCI AATT 1 cut(s) 466
MlyI GAGTC 7 cut(s) 101, 146, 194, 281, 283, 301, 404
MmeI TCCRAC 2 cut(s) 129, 255
MspI CCGG 5 cut(s) 10, 15, 24, 34, 153
MspR9I CCNGG 2 cut(s) 11, 24
MvnI CGCG 5 cut(s) 43, 92, 164, 323, 337
MwoI GCNNNNNNNGC 7 cut(s) 11, 51, 74, 153, 211, 236, 310
NciI CCSGG 2 cut(s) 11, 24
NdeII GATC 1 cut(s) 318
NlaIV GGNNCC 2 cut(s) 28, 350
NmeAIII GCCGAG 3 cut(s) 103, 123, 307
PaeR7I CTCGAG 2 cut(s) 248, 269
PauI GCGCGC 1 cut(s) 41
PfeI GAWTC 3 cut(s) 83, 125, 174
PkrI GCNGC 9 cut(s) 96, 163, 192, 246, 264, 267, 300, 303, 339
PleI GAGTC 7 cut(s) 101, 145, 193, 280, 283, 301, 404
PpsI GAGTC 7 cut(s) 101, 145, 193, 280, 283, 301, 404
PspFI CCCAGC 1 cut(s) 356
PspN4I GGNNCC 2 cut(s) 28, 350
PspPI GGNCC 4 cut(s) 12, 26, 142, 349
PspXI VCTCGAGB 2 cut(s) 248, 269
PstI CTGCAG 1 cut(s) 306
PstNI CAGNNNCTG 1 cut(s) 298
PteI GCGCGC 1 cut(s) 41
SalI GTCGAC 1 cut(s) 18
SatI GCNGC 9 cut(s) 95, 162, 191, 245, 263, 266, 299, 302, 338
Sau3AI GATC 1 cut(s) 318
Sau96I GGNCC 4 cut(s) 12, 26, 142, 349
SchI GAGTC 7 cut(s) 101, 146, 194, 281, 283, 301, 404
ScrFI CCNGG 2 cut(s) 11, 24
SetI ASST 7 cut(s) 119, 170, 216, 315, 379, 442, 455
SfaNI GCATC 2 cut(s) 64, 285
SfcI CTRYAG 1 cut(s) 302
Sfr274I CTCGAG 2 cut(s) 248, 269
SinI GGWCC 2 cut(s) 26, 349
SlaI CTCGAG 2 cut(s) 248, 269
SmlI CTYRAG 3 cut(s) 248, 269, 448
SmoI CTYRAG 3 cut(s) 248, 269, 448
Sse9I AATT 1 cut(s) 466
SsiI CCGC 9 cut(s) 52, 145, 162, 244, 254, 262, 265, 337, 340
StyD4I CCNGG 2 cut(s) 9, 22
StyI CCWWGG 1 cut(s) 225
TaaI ACNGT 2 cut(s) 59, 431
TaqI TCGA 3 cut(s) 19, 249, 270
TasI AATT 1 cut(s) 466
TauI GCSGC 5 cut(s) 164, 247, 265, 268, 340
TfiI GAWTC 3 cut(s) 83, 125, 174
TscAI CASTG 2 cut(s) 436, 467
TseI GCWGC 4 cut(s) 94, 190, 298, 301
TspGWI ACGGA 2 cut(s) 224, 382
TspRI CASTG 2 cut(s) 436, 467
VpaK11BI GGWCC 2 cut(s) 26, 349
XhoI CTCGAG 2 cut(s) 248, 269
XmiI GTMKAC 1 cut(s) 19
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.