RchiOBHm_Chr5g0013491

Transcription initiation factor TFIID subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0018191
Physical Location & Seq
Forward (+)
9093046 .. 9095161
2116 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 756 bp
ATGTATTTTCCTACTGAAGCAGCAAAAAAGAAAGCAAGAGATGATAGAAGATTGGGGGAGGAGCAAGAGAAACGAAGAATTGAAGAGAGTGCCAGGAGGCTGTATGACAAGGAAATTAGGATGGCAAAGGAGCGAGAAAGACGTGCAGAGCTCAAAAAATATGAAGCAGCCATCAAACAAGAGAGAGAGGAAGAACTCCAGAAAGTGAAGAAGAATAAAATGATGCATAGAAGTCCACAGATAAACAATGACTATTTAGAGGACTCGCGGACAAGAAGATTTGGTAAAAGGATGCCAGAAAGAGATCAGGGGGCCAAAAGGAGGCCAACTGTTGATTTGGGAAGTTATGGTGGAGGTTATGCCTCAACTACTAAGCGTCATAAAGGAGGAGAGGTTGGTTTGGCAAACATCTTGGAGCGCATTGTAGAGTCCCTCAAAGATCGAATTGAAATCTCGTATCTTTTTCTAAAACCAGTATCCAAAAAGGAAGCTCCTGATTACCGGGACATCATAGAGCACCCAATGGATCTGTCGACAATCAAGGTGAAGGTTCGGAATATGGAGTACAAGAGCCGGGAGCAATTCAGACAGGATGTGCGGCAGATTGCCTTTAATGCGCATAAATATAATGATGGGCGTAACCCGGATATCCCTCCACTTGCAGATGAGCTTTTAAACTTTTGTGACTATATGTTGGTTGAGAATGAAGAAAGCTTGACTGAAGCGGAAGCAGGCATTGAATATACAGATATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000428 GO:0000988 GO:0000989 GO:0001076 GO:0001129 GO:0001132 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004402 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0006139 GO:0006325 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008080 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016591 GO:0016740 GO:0016746 GO:0016747 GO:0017025 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0022607 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034212 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043565 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051123 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0055029 GO:0060255 GO:0061695 GO:0061733 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070897 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 map03022
Pfam Domains
Protein Families
Bromodomain DUF3591 TBP-binding ubiquitin zf-CCHC_6

Protein Analysis

251

Amino Acids

29.71

Weight (kDa)

9.02

Isoelectric Point (pI)

74.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bromodomain PF00439 139 - 218 1.1e-20 Bromodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 618
AccI GTMKAC 1 cut(s) 533
AccII CGCG 1 cut(s) 268
AciI CCGC 3 cut(s) 268, 598, 725
AclWI GGATC 1 cut(s) 534
AcuI CTGAAG 2 cut(s) 36, 741
AfaI GTAC 1 cut(s) 566
AfiI CCNNNNNNNGG 1 cut(s) 321
AgsI TTSAA 3 cut(s) 83, 449, 740
AjiI CACGTC 1 cut(s) 143
AjnI CCWGG 1 cut(s) 92
AluBI AGCT 4 cut(s) 151, 491, 670, 714
AluI AGCT 4 cut(s) 151, 491, 670, 714
Alw21I GWGCWC 2 cut(s) 153, 519
AlwI GGATC 1 cut(s) 534
AoxI GGCC 2 cut(s) 312, 323
ApeKI GCWGC 2 cut(s) 20, 167
AspLEI GCGC 2 cut(s) 420, 619
AspS9I GGNCC 1 cut(s) 312
AsuC2I CCSGG 3 cut(s) 503, 575, 644
AsuHPI GGTGA 1 cut(s) 556
BanII GRGCYC 1 cut(s) 153
Bbv12I GWGCWC 2 cut(s) 153, 519
BbvI GCAGC 2 cut(s) 32, 179
BccI CCATC 3 cut(s) 115, 179, 626
BciT130I CCWGG 1 cut(s) 94
BciVI GTATCC 1 cut(s) 487
BcnI CCSGG 3 cut(s) 503, 575, 644
BfuI GTATCC 1 cut(s) 487
BisI GCNGC 3 cut(s) 21, 168, 599
BlsI GCNGC 3 cut(s) 22, 169, 600
Bme1390I CCNGG 4 cut(s) 94, 503, 575, 644
BmgBI CACGTC 1 cut(s) 143
BmgT120I GGNCC 1 cut(s) 312
BmiI GGNNCC 1 cut(s) 313
BmrFI CCNGG 4 cut(s) 94, 503, 575, 644
BmsI GCATC 2 cut(s) 213, 282
BpmI CTGGAG 1 cut(s) 182
BpuMI CCSGG 3 cut(s) 503, 575, 644
BsaXI ACNNNNNCTCC 2 cut(s) 378, 408
Bsc4I CCNNNNNNNGG 1 cut(s) 321
Bse1I ACTGG 1 cut(s) 473
BseBI CCWGG 1 cut(s) 94
BseGI GGATG 3 cut(s) 126, 297, 598
BseLI CCNNNNNNNGG 1 cut(s) 321
BseNI ACTGG 1 cut(s) 473
BseRI GAGGAG 2 cut(s) 74, 402
BseXI GCAGC 2 cut(s) 32, 179
BsgI GTGCAG 1 cut(s) 165
Bsh1236I CGCG 1 cut(s) 268
BshFI GGCC 2 cut(s) 314, 325
BsiHKAI GWGCWC 2 cut(s) 153, 519
BsiSI CCGG 3 cut(s) 502, 574, 644
BslFI GGGAC 2 cut(s) 415, 518
BslI CCNNNNNNNGG 1 cut(s) 321
BsmFI GGGAC 2 cut(s) 415, 518
BsnI GGCC 2 cut(s) 314, 325
Bsp1286I GDGCHC 2 cut(s) 153, 519
Bsp143I GATC 3 cut(s) 304, 439, 526
BspACI CCGC 3 cut(s) 268, 598, 725
BspANI GGCC 2 cut(s) 314, 325
BspFNI CGCG 1 cut(s) 268
BspLI GGNNCC 1 cut(s) 313
BspPI GGATC 1 cut(s) 534
BsrI ACTGG 1 cut(s) 473
BssMI GATC 3 cut(s) 304, 439, 526
Bst2UI CCWGG 1 cut(s) 94
Bst4CI ACNGT 1 cut(s) 331
Bst6I CTCTTC 1 cut(s) 78
BstC8I GCNNGC 1 cut(s) 733
BstDEI CTNAG 1 cut(s) 372
BstF5I GGATG 3 cut(s) 126, 297, 598
BstFNI CGCG 1 cut(s) 268
BstHHI GCGC 2 cut(s) 420, 619
BstKTI GATC 3 cut(s) 307, 442, 529
BstMBI GATC 3 cut(s) 304, 439, 526
BstMWI GCNNNNNNNGC 1 cut(s) 614
BstNI CCWGG 1 cut(s) 94
BstSCI CCNGG 4 cut(s) 92, 501, 573, 642
BstUI CGCG 1 cut(s) 268
BstV1I GCAGC 2 cut(s) 32, 179
BstX2I RGATCY 1 cut(s) 526
BstYI RGATCY 1 cut(s) 526
BsuI GTATCC 1 cut(s) 487
BsuRI GGCC 2 cut(s) 314, 325
BtrI CACGTC 1 cut(s) 143
BtsCI GGATG 3 cut(s) 126, 297, 598
Cac8I GCNNGC 1 cut(s) 733
CfoI GCGC 2 cut(s) 420, 619
Cfr13I GGNCC 1 cut(s) 312
CseI GACGC 1 cut(s) 365
Csp6I GTAC 1 cut(s) 565
CviJI RGCY 9 cut(s) 100, 151, 170, 314, 325, 491, 573, 670, 714
CviKI_1 RGCY 9 cut(s) 100, 151, 170, 314, 325, 491, 573, 670, 714
CviQI GTAC 1 cut(s) 565
DdeI CTNAG 1 cut(s) 372
DpnI GATC 3 cut(s) 306, 441, 528
DpnII GATC 3 cut(s) 304, 439, 526
DraI TTTAAA 1 cut(s) 675
Eam1104I CTCTTC 1 cut(s) 78
EarI CTCTTC 1 cut(s) 78
Ecl136II GAGCTC 1 cut(s) 151
Eco24I GRGCYC 1 cut(s) 153
Eco32I GATATC 1 cut(s) 649
Eco53kI GAGCTC 1 cut(s) 151
Eco57I CTGAAG 2 cut(s) 36, 741
EcoICRI GAGCTC 1 cut(s) 151
EcoRII CCWGG 1 cut(s) 92
EcoRV GATATC 1 cut(s) 649
EcoT22I ATGCAT 1 cut(s) 228
EcoT38I GRGCYC 1 cut(s) 153
FaqI GGGAC 2 cut(s) 415, 518
FblI GTMKAC 1 cut(s) 533
Fnu4HI GCNGC 3 cut(s) 21, 168, 599
FokI GGATG 3 cut(s) 133, 304, 605
FriOI GRGCYC 1 cut(s) 153
Fsp4HI GCNGC 3 cut(s) 21, 168, 599
FspAI RTGCGCAY 1 cut(s) 618
FspI TGCGCA 1 cut(s) 618
GlaI GCGC 2 cut(s) 419, 618
GluI GCNGC 3 cut(s) 21, 168, 599
GsuI CTGGAG 1 cut(s) 182
HaeIII GGCC 2 cut(s) 314, 325
HapII CCGG 3 cut(s) 502, 574, 644
HgaI GACGC 1 cut(s) 365
HhaI GCGC 2 cut(s) 420, 619
Hin6I GCGC 2 cut(s) 418, 617
HinP1I GCGC 2 cut(s) 418, 617
HincII GTYRAC 1 cut(s) 534
HindII GTYRAC 1 cut(s) 534
HindIII AAGCTT 1 cut(s) 712
HinfI GANTC 2 cut(s) 263, 428
HpaII CCGG 3 cut(s) 502, 574, 644
HphI GGTGA 1 cut(s) 556
Hpy166II GTNNAC 2 cut(s) 236, 534
Hpy188I TCNGA 2 cut(s) 555, 587
Hpy188III TCNNGA 2 cut(s) 199, 494
Hpy8I GTNNAC 2 cut(s) 236, 534
HpyAV CCTTC 1 cut(s) 541
HpyCH4III ACNGT 1 cut(s) 331
HpyCH4IV ACGT 1 cut(s) 142
HpyCH4V TGCA 3 cut(s) 146, 226, 662
HpyF10VI GCNNNNNNNGC 1 cut(s) 614
HpyF3I CTNAG 1 cut(s) 372
HpySE526I ACGT 1 cut(s) 142
HspAI GCGC 2 cut(s) 418, 617
Kzo9I GATC 3 cut(s) 304, 439, 526
LmnI GCTCC 5 cut(s) 61, 130, 415, 496, 577
Lsp1109I GCAGC 2 cut(s) 32, 179
LweI GCATC 2 cut(s) 213, 282
MaeII ACGT 1 cut(s) 142
MaeIII GTNAC 2 cut(s) 638, 683
MalI GATC 3 cut(s) 306, 441, 528
MboI GATC 3 cut(s) 304, 439, 526
MboII GAAGA 8 cut(s) 60, 87, 95, 203, 220, 223, 288, 719
MflI RGATCY 1 cut(s) 526
MhlI GDGCHC 2 cut(s) 153, 519
MluCI AATT 4 cut(s) 78, 114, 444, 581
MlyI GAGTC 2 cut(s) 257, 437
Mph1103I ATGCAT 1 cut(s) 228
MseI TTAA 2 cut(s) 612, 674
MspI CCGG 3 cut(s) 502, 574, 644
MspR9I CCNGG 4 cut(s) 94, 503, 575, 644
MvaI CCWGG 1 cut(s) 94
MvnI CGCG 1 cut(s) 268
MwoI GCNNNNNNNGC 1 cut(s) 614
NciI CCSGG 3 cut(s) 503, 575, 644
NdeII GATC 3 cut(s) 304, 439, 526
NlaIV GGNNCC 1 cut(s) 313
NmuCI GTSAC 1 cut(s) 683
NsbI TGCGCA 1 cut(s) 618
NsiI ATGCAT 1 cut(s) 228
PkrI GCNGC 3 cut(s) 22, 169, 600
PleI GAGTC 2 cut(s) 257, 436
PpsI GAGTC 2 cut(s) 257, 436
Psp124BI GAGCTC 1 cut(s) 153
Psp6I CCWGG 1 cut(s) 92
PspGI CCWGG 1 cut(s) 92
PspN4I GGNNCC 1 cut(s) 313
PspPI GGNCC 1 cut(s) 312
PsuI RGATCY 1 cut(s) 526
RsaI GTAC 1 cut(s) 566
RsaNI GTAC 1 cut(s) 565
SacI GAGCTC 1 cut(s) 153
SalI GTCGAC 1 cut(s) 532
SaqAI TTAA 2 cut(s) 612, 674
SatI GCNGC 3 cut(s) 21, 168, 599
Sau3AI GATC 3 cut(s) 304, 439, 526
Sau96I GGNCC 1 cut(s) 312
SchI GAGTC 2 cut(s) 257, 437
ScrFI CCNGG 4 cut(s) 94, 503, 575, 644
SduI GDGCHC 2 cut(s) 153, 519
SetI ASST 9 cut(s) 145, 153, 358, 396, 493, 546, 552, 672, 716
SfaNI GCATC 2 cut(s) 213, 282
Sse9I AATT 4 cut(s) 78, 114, 444, 581
SsiI CCGC 3 cut(s) 268, 598, 725
SstI GAGCTC 1 cut(s) 153
StyD4I CCNGG 4 cut(s) 92, 501, 573, 642
TaaI ACNGT 1 cut(s) 331
TaiI ACGT 1 cut(s) 145
TaqI TCGA 2 cut(s) 442, 533
TasI AATT 4 cut(s) 78, 114, 444, 581
TatI WGTACW 1 cut(s) 564
TauI GCSGC 1 cut(s) 601
Tru1I TTAA 2 cut(s) 612, 674
Tru9I TTAA 2 cut(s) 612, 674
TseFI GTSAC 1 cut(s) 683
TseI GCWGC 2 cut(s) 20, 167
Tsp45I GTSAC 1 cut(s) 683
TspDTI ATGAA 2 cut(s) 177, 720
XmiI GTMKAC 1 cut(s) 533
Zsp2I ATGCAT 1 cut(s) 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.