Rh5DG439000

Transcription initiation factor TFIID subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0018191
Physical Location & Seq
Reverse (-)
70221821 .. 70222415
595 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG439000.1

Sequence Viewer

Length: 447 bp
ATGTCGATGATAAGATCGTCAAGGCCCAGATTTGGGACACCACCGGCCAAGAAAGGTGATAAGCCTTTGAATTCCATTCATTTTGTTGGTTTGTCAAACATCTTGGAGCGCATTGTAGAGTCCCTCAAAGATCGAATTGAAATCTCGTATCTTTTTCTAAAACCAGTATCCAAAAAGGAAGCTCCTGATTACCGGGACATCATAGAGCATCCAATGGATTTGTCGACAATCAAGATGAAGGTTCGGAAGATGGAGTACAAGAGCCGGGAGCAATTCAGACAAGGTGTGTGGCAGATTGCCTTTAATGCGCATAAATATAATGATGGGCGTAACCCGGATATCCCTCCACTTGCAGATGAGCTTTTAAACTTTTGTGAATATATGTTGGTTGAGAATGAAGAAAGCTTGACTGAAGCGGAAGCAGGCATTGAATATAGAGATATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000428 GO:0000988 GO:0000989 GO:0001076 GO:0001129 GO:0001132 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004402 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0006139 GO:0006325 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008080 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016591 GO:0016740 GO:0016746 GO:0016747 GO:0017025 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0022607 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034212 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043565 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051123 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0055029 GO:0060255 GO:0061695 GO:0061733 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070897 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 map03022
Pfam Domains
Protein Families
Bromodomain DUF3591 TBP-binding ubiquitin zf-CCHC_6

Protein Analysis

148

Amino Acids

17.29

Weight (kDa)

6.32

Isoelectric Point (pI)

45.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bromodomain PF00439 36 - 116 1.2e-18 Bromodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 309
AccI GTMKAC 1 cut(s) 224
AciI CCGC 1 cut(s) 416
AcoI YGGCCR 1 cut(s) 45
AcsI RAATTY 1 cut(s) 70
AcuI CTGAAG 1 cut(s) 432
AfaI GTAC 1 cut(s) 257
AfiI CCNNNNNNNGG 2 cut(s) 32, 33
AgsI TTSAA 3 cut(s) 70, 140, 431
AluBI AGCT 3 cut(s) 182, 361, 405
AluI AGCT 3 cut(s) 182, 361, 405
AoxI GGCC 2 cut(s) 23, 45
ApoI RAATTY 1 cut(s) 70
AspLEI GCGC 2 cut(s) 111, 310
AspS9I GGNCC 1 cut(s) 24
AsuC2I CCSGG 3 cut(s) 194, 266, 335
AsuHPI GGTGA 1 cut(s) 68
BarI GAAGNNNNNNTAC 2 cut(s) 239, 271
BccI CCATC 2 cut(s) 244, 317
BciVI GTATCC 1 cut(s) 178
BcnI CCSGG 3 cut(s) 194, 266, 335
BfuI GTATCC 1 cut(s) 178
Bme1390I CCNGG 3 cut(s) 194, 266, 335
BmgT120I GGNCC 1 cut(s) 24
BmrFI CCNGG 3 cut(s) 194, 266, 335
BmsI GCATC 1 cut(s) 217
BpuMI CCSGG 3 cut(s) 194, 266, 335
Bsc4I CCNNNNNNNGG 2 cut(s) 32, 33
Bse118I RCCGGY 1 cut(s) 43
Bse1I ACTGG 1 cut(s) 164
BseGI GGATG 1 cut(s) 208
BseLI CCNNNNNNNGG 2 cut(s) 32, 33
BseNI ACTGG 1 cut(s) 164
BshFI GGCC 2 cut(s) 25, 47
BsiSI CCGG 4 cut(s) 44, 193, 265, 335
BslFI GGGAC 3 cut(s) 49, 106, 209
BslI CCNNNNNNNGG 2 cut(s) 32, 33
BsmFI GGGAC 3 cut(s) 49, 106, 209
BsnI GGCC 2 cut(s) 25, 47
Bsp143I GATC 2 cut(s) 14, 130
BspACI CCGC 1 cut(s) 416
BspANI GGCC 2 cut(s) 25, 47
BsrFI RCCGGY 1 cut(s) 43
BsrI ACTGG 1 cut(s) 164
BssAI RCCGGY 1 cut(s) 43
BssMI GATC 2 cut(s) 14, 130
BstC8I GCNNGC 1 cut(s) 424
BstF5I GGATG 1 cut(s) 208
BstHHI GCGC 2 cut(s) 111, 310
BstKTI GATC 2 cut(s) 17, 133
BstMBI GATC 2 cut(s) 14, 130
BstMWI GCNNNNNNNGC 1 cut(s) 305
BstSCI CCNGG 3 cut(s) 192, 264, 333
BsuI GTATCC 1 cut(s) 178
BsuRI GGCC 2 cut(s) 25, 47
BtsCI GGATG 1 cut(s) 208
Cac8I GCNNGC 1 cut(s) 424
CfoI GCGC 2 cut(s) 111, 310
Cfr10I RCCGGY 1 cut(s) 43
Cfr13I GGNCC 1 cut(s) 24
Csp6I GTAC 1 cut(s) 256
CspCI CAANNNNNGTGG 2 cut(s) 269, 304
CviJI RGCY 7 cut(s) 25, 47, 64, 182, 264, 361, 405
CviKI_1 RGCY 7 cut(s) 25, 47, 64, 182, 264, 361, 405
CviQI GTAC 1 cut(s) 256
DpnI GATC 2 cut(s) 16, 132
DpnII GATC 2 cut(s) 14, 130
DraI TTTAAA 1 cut(s) 366
EaeI YGGCCR 1 cut(s) 45
Eco32I GATATC 1 cut(s) 340
Eco57I CTGAAG 1 cut(s) 432
EcoRI GAATTC 1 cut(s) 70
EcoRV GATATC 1 cut(s) 340
FaiI YATR 7 cut(s) 203, 312, 318, 381, 383, 435, 443
FaqI GGGAC 3 cut(s) 49, 106, 209
FblI GTMKAC 1 cut(s) 224
FokI GGATG 1 cut(s) 195
FspAI RTGCGCAY 1 cut(s) 309
FspI TGCGCA 1 cut(s) 309
GlaI GCGC 2 cut(s) 110, 309
HaeIII GGCC 2 cut(s) 25, 47
HapII CCGG 4 cut(s) 44, 193, 265, 335
HhaI GCGC 2 cut(s) 111, 310
Hin6I GCGC 2 cut(s) 109, 308
HinP1I GCGC 2 cut(s) 109, 308
HincII GTYRAC 1 cut(s) 225
HindII GTYRAC 1 cut(s) 225
HindIII AAGCTT 1 cut(s) 403
HinfI GANTC 1 cut(s) 119
HpaII CCGG 4 cut(s) 44, 193, 265, 335
HphI GGTGA 1 cut(s) 68
Hpy166II GTNNAC 1 cut(s) 225
Hpy188I TCNGA 2 cut(s) 246, 278
Hpy188III TCNNGA 2 cut(s) 185, 232
Hpy8I GTNNAC 1 cut(s) 225
HpyAV CCTTC 1 cut(s) 232
HpyCH4V TGCA 1 cut(s) 353
HpyF10VI GCNNNNNNNGC 1 cut(s) 305
HspAI GCGC 2 cut(s) 109, 308
Kzo9I GATC 2 cut(s) 14, 130
LmnI GCTCC 3 cut(s) 106, 187, 268
LpnPI CCDG 8 cut(s) 40, 57, 177, 198, 206, 278, 348, 408
LweI GCATC 1 cut(s) 217
MaeIII GTNAC 1 cut(s) 329
MalI GATC 2 cut(s) 16, 132
MboI GATC 2 cut(s) 14, 130
MboII GAAGA 2 cut(s) 259, 410
MluCI AATT 3 cut(s) 70, 135, 272
MlyI GAGTC 1 cut(s) 128
MnlI CCTC 2 cut(s) 134, 354
MseI TTAA 2 cut(s) 303, 365
MspI CCGG 4 cut(s) 44, 193, 265, 335
MspR9I CCNGG 3 cut(s) 194, 266, 335
MwoI GCNNNNNNNGC 1 cut(s) 305
NciI CCSGG 3 cut(s) 194, 266, 335
NdeII GATC 2 cut(s) 14, 130
NsbI TGCGCA 1 cut(s) 309
PleI GAGTC 1 cut(s) 127
PpsI GAGTC 1 cut(s) 127
PspPI GGNCC 1 cut(s) 24
RsaI GTAC 1 cut(s) 257
RsaNI GTAC 1 cut(s) 256
SalI GTCGAC 1 cut(s) 223
SaqAI TTAA 2 cut(s) 303, 365
Sau3AI GATC 2 cut(s) 14, 130
Sau96I GGNCC 1 cut(s) 24
SchI GAGTC 1 cut(s) 128
ScrFI CCNGG 3 cut(s) 194, 266, 335
SetI ASST 6 cut(s) 58, 184, 243, 286, 363, 407
SfaNI GCATC 1 cut(s) 217
Sse9I AATT 3 cut(s) 70, 135, 272
SsiI CCGC 1 cut(s) 416
StyD4I CCNGG 3 cut(s) 192, 264, 333
TaqI TCGA 3 cut(s) 5, 133, 224
TasI AATT 3 cut(s) 70, 135, 272
TatI WGTACW 1 cut(s) 255
Tru1I TTAA 2 cut(s) 303, 365
Tru9I TTAA 2 cut(s) 303, 365
TspDTI ATGAA 3 cut(s) 68, 251, 411
XapI RAATTY 1 cut(s) 70
XmiI GTMKAC 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.