Rmu_sc0009199.1_g000002

Transcription initiation factor TFIID subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009199.1
OG0018191
Physical Location & Seq
Forward (+)
8169 .. 10104
1936 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009199.1_g000002.1.cds

Sequence Viewer

Length: 708 bp
atgtcgattgatgaccgggaggatgcaatcaggcgaccggaattgaatctccgacgcacgagcaagatctccgccgcacgacgccgactggaactggatctccagtcctctcctcttcttttcttctgtgttaggttctgtactgtgctcggcgactacgacggtcagacggcgactacgactaactcttcaagttcgtcttcctcggtgattccggcgacggcaaatccaacctcttgtccaggttcatttcgcaacgagttcaacctcgagtctatatccaccatcggcgtcgagttcgccacttggagcatccatgtcgatgataagatcgtcaaggcccagatttgggacaccaccggccaagaaaggttggaagctcctgattaccgggacatcatagagcatccaatggatttgtcgacaatcaagatgaaggttcggaagatggagtacaagagccgggagcaattcagacaaggtgtgtggcagattgcctttaatgcgcataaatataatgatgggcgtaacccggatatccctccacttgcagatgagcttttaaactttttagcttttgctacctcaccggaggttatcggaaatctcaccacagtagcttttgttgtcagcgacagtagcttttgtagtcgccggaagtcggccggagactccccggaagtcggccggagactcgccggaagttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000428 GO:0000988 GO:0000989 GO:0001076 GO:0001129 GO:0001132 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004402 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0006139 GO:0006325 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008080 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016591 GO:0016740 GO:0016746 GO:0016747 GO:0017025 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0022607 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034212 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043565 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051123 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0055029 GO:0060255 GO:0061695 GO:0061733 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070897 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 map03022
Pfam Domains
Protein Families
Bromodomain DUF3591 TBP-binding ubiquitin zf-CCHC_6

Protein Analysis

235

Amino Acids

26.3

Weight (kDa)

5.98

Isoelectric Point (pI)

56.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 507
AccI GTMKAC 1 cut(s) 422
AciI CCGC 2 cut(s) 72, 75
AclWI GGATC 1 cut(s) 105
AcoI YGGCCR 3 cut(s) 361, 663, 685
AcyI GRCGYC 2 cut(s) 82, 291
AfaI GTAC 2 cut(s) 142, 455
AfiI CCNNNNNNNGG 4 cut(s) 348, 349, 661, 683
AgsI TTSAA 3 cut(s) 46, 192, 265
AjnI CCWGG 1 cut(s) 241
AloI GAACNNNNNNTCC 2 cut(s) 84, 116
AluBI AGCT 5 cut(s) 380, 559, 575, 620, 642
AluI AGCT 5 cut(s) 380, 559, 575, 620, 642
Alw21I GWGCWC 1 cut(s) 150
Alw26I GTCTC 2 cut(s) 663, 685
AlwI GGATC 1 cut(s) 105
Ama87I CYCGRG 1 cut(s) 269
AoxI GGCC 4 cut(s) 339, 361, 663, 685
AspLEI GCGC 1 cut(s) 508
AspS9I GGNCC 1 cut(s) 340
AsuC2I CCSGG 5 cut(s) 17, 392, 464, 533, 677
AsuHPI GGTGA 3 cut(s) 220, 579, 601
AvaI CYCGRG 1 cut(s) 269
BarI GAAGNNNNNNTAC 2 cut(s) 437, 469
BauI CACGAG 1 cut(s) 58
BbsI GAAGAC 1 cut(s) 192
Bbv12I GWGCWC 1 cut(s) 150
BccI CCATC 3 cut(s) 293, 442, 515
BceAI ACGGC 2 cut(s) 186, 237
BcgI CGANNNNNNTGC 2 cut(s) 301, 335
BciT130I CCWGG 1 cut(s) 243
BcnI CCSGG 5 cut(s) 17, 392, 464, 533, 677
BcoDI GTCTC 2 cut(s) 663, 685
BglII AGATCT 1 cut(s) 66
BisI GCNGC 1 cut(s) 75
BlsI GCNGC 1 cut(s) 76
Bme1390I CCNGG 6 cut(s) 17, 243, 392, 464, 533, 677
BmeT110I CYCGRG 1 cut(s) 269
BmgT120I GGNCC 1 cut(s) 340
BmrFI CCNGG 6 cut(s) 17, 243, 392, 464, 533, 677
BmsI GCATC 3 cut(s) 13, 321, 415
BpiI GAAGAC 1 cut(s) 192
BpmI CTGGAG 1 cut(s) 86
BpuMI CCSGG 5 cut(s) 17, 392, 464, 533, 677
BsaHI GRCGYC 2 cut(s) 82, 291
BsaJI CCNNGG 2 cut(s) 204, 675
BsaWI WCCGGW 2 cut(s) 37, 589
BsaXI ACNNNNNCTCC 2 cut(s) 84, 114
Bsc4I CCNNNNNNNGG 4 cut(s) 348, 349, 661, 683
Bse118I RCCGGY 1 cut(s) 359
Bse1I ACTGG 3 cut(s) 93, 99, 103
BseBI CCWGG 1 cut(s) 243
BseDI CCNNGG 2 cut(s) 204, 675
BseGI GGATG 3 cut(s) 28, 312, 406
BseLI CCNNNNNNNGG 4 cut(s) 348, 349, 661, 683
BseNI ACTGG 3 cut(s) 93, 99, 103
BseRI GAGGAG 1 cut(s) 102
BseX3I CGGCCG 2 cut(s) 663, 685
Bsh1285I CGRYCG 3 cut(s) 38, 666, 688
BshFI GGCC 4 cut(s) 341, 363, 665, 687
BsiEI CGRYCG 3 cut(s) 38, 666, 688
BsiHKAI GWGCWC 1 cut(s) 150
BsiHKCI CYCGRG 1 cut(s) 269
BslFI GGGAC 2 cut(s) 365, 407
BslI CCNNNNNNNGG 4 cut(s) 348, 349, 661, 683
BsmAI GTCTC 2 cut(s) 663, 685
BsmFI GGGAC 2 cut(s) 365, 407
BsnI GGCC 4 cut(s) 341, 363, 665, 687
BsoBI CYCGRG 1 cut(s) 269
Bsp1286I GDGCHC 1 cut(s) 150
Bsp143I GATC 3 cut(s) 66, 97, 330
BspACI CCGC 2 cut(s) 72, 75
BspANI GGCC 4 cut(s) 341, 363, 665, 687
BspPI GGATC 1 cut(s) 105
BsrFI RCCGGY 1 cut(s) 359
BsrI ACTGG 3 cut(s) 93, 99, 103
BssAI RCCGGY 1 cut(s) 359
BssECI CCNNGG 2 cut(s) 204, 675
BssMI GATC 3 cut(s) 66, 97, 330
BssNI GRCGYC 2 cut(s) 82, 291
BssSI CACGAG 1 cut(s) 58
Bst2BI CACGAG 1 cut(s) 58
Bst2UI CCWGG 1 cut(s) 243
Bst4CI ACNGT 4 cut(s) 145, 164, 616, 638
Bst6I CTCTTC 2 cut(s) 120, 193
BstACI GRCGYC 2 cut(s) 82, 291
BstF5I GGATG 3 cut(s) 28, 312, 406
BstHHI GCGC 1 cut(s) 508
BstKTI GATC 3 cut(s) 69, 100, 333
BstMAI GTCTC 2 cut(s) 663, 685
BstMBI GATC 3 cut(s) 66, 97, 330
BstMCI CGRYCG 3 cut(s) 38, 666, 688
BstMWI GCNNNNNNNGC 2 cut(s) 503, 639
BstNI CCWGG 1 cut(s) 243
BstSCI CCNGG 6 cut(s) 15, 241, 390, 462, 531, 675
BstV2I GAAGAC 1 cut(s) 192
BstX2I RGATCY 2 cut(s) 66, 97
BstYI RGATCY 2 cut(s) 66, 97
BstZI CGGCCG 2 cut(s) 663, 685
BsuRI GGCC 4 cut(s) 341, 363, 665, 687
BtsCI GGATG 3 cut(s) 28, 312, 406
CfoI GCGC 1 cut(s) 508
Cfr10I RCCGGY 1 cut(s) 359
Cfr13I GGNCC 1 cut(s) 340
CseI GACGC 3 cut(s) 63, 90, 280
Csp6I GTAC 2 cut(s) 141, 454
CspCI CAANNNNNGTGG 2 cut(s) 467, 502
CviAII CATG 1 cut(s) 317
CviQI GTAC 2 cut(s) 141, 454
DpnI GATC 3 cut(s) 68, 99, 332
DpnII GATC 3 cut(s) 66, 97, 330
DraI TTTAAA 1 cut(s) 564
EaeI YGGCCR 3 cut(s) 361, 663, 685
EagI CGGCCG 2 cut(s) 663, 685
Eam1104I CTCTTC 2 cut(s) 120, 193
EarI CTCTTC 2 cut(s) 120, 193
EciI GGCGGA 1 cut(s) 61
EclXI CGGCCG 2 cut(s) 663, 685
Eco32I GATATC 1 cut(s) 538
Eco52I CGGCCG 2 cut(s) 663, 685
Eco88I CYCGRG 1 cut(s) 269
EcoRII CCWGG 1 cut(s) 241
EcoRV GATATC 1 cut(s) 538
FaeI CATG 1 cut(s) 320
FaiI YATR 5 cut(s) 278, 318, 401, 510, 516
FalI AAGNNNNNCTT 2 cut(s) 184, 216
FaqI GGGAC 2 cut(s) 365, 407
FatI CATG 1 cut(s) 316
FblI GTMKAC 1 cut(s) 422
Fnu4HI GCNGC 1 cut(s) 75
FokI GGATG 3 cut(s) 35, 299, 393
Fsp4HI GCNGC 1 cut(s) 75
FspAI RTGCGCAY 1 cut(s) 507
FspI TGCGCA 1 cut(s) 507
GlaI GCGC 1 cut(s) 507
GluI GCNGC 1 cut(s) 75
GsuI CTGGAG 1 cut(s) 86
HaeIII GGCC 4 cut(s) 341, 363, 665, 687
HgaI GACGC 3 cut(s) 63, 90, 280
HhaI GCGC 1 cut(s) 508
Hin1I GRCGYC 2 cut(s) 82, 291
Hin1II CATG 1 cut(s) 320
Hin6I GCGC 1 cut(s) 506
HinP1I GCGC 1 cut(s) 506
HincII GTYRAC 1 cut(s) 423
HindII GTYRAC 1 cut(s) 423
HinfI GANTC 5 cut(s) 46, 211, 272, 671, 693
HphI GGTGA 3 cut(s) 220, 579, 601
Hpy166II GTNNAC 1 cut(s) 423
Hpy188I TCNGA 5 cut(s) 53, 168, 444, 476, 602
Hpy188III TCNNGA 2 cut(s) 383, 430
Hpy8I GTNNAC 1 cut(s) 423
Hpy99I CGWCG 5 cut(s) 57, 84, 164, 223, 296
HpyAV CCTTC 1 cut(s) 430
HpyCH4III ACNGT 4 cut(s) 145, 164, 616, 638
HpyCH4V TGCA 2 cut(s) 26, 551
HpyF10VI GCNNNNNNNGC 2 cut(s) 503, 639
Hsp92I GRCGYC 2 cut(s) 82, 291
Hsp92II CATG 1 cut(s) 320
HspAI GCGC 1 cut(s) 506
Kzo9I GATC 3 cut(s) 66, 97, 330
LmnI GCTCC 3 cut(s) 309, 385, 466
LweI GCATC 3 cut(s) 13, 321, 415
MaeIII GTNAC 1 cut(s) 527
MalI GATC 3 cut(s) 68, 99, 332
MboI GATC 3 cut(s) 66, 97, 330
MboII GAAGA 5 cut(s) 107, 115, 180, 192, 457
MflI RGATCY 2 cut(s) 66, 97
MhlI GDGCHC 1 cut(s) 150
MluCI AATT 2 cut(s) 41, 470
MlyI GAGTC 3 cut(s) 281, 665, 687
MmeI TCCRAC 3 cut(s) 76, 254, 354
MnlI CCTC 9 cut(s) 13, 118, 123, 214, 244, 278, 552, 586, 595
MseI TTAA 3 cut(s) 501, 563, 706
MslI CAYNNNNRTG 1 cut(s) 321
MspR9I CCNGG 6 cut(s) 17, 243, 392, 464, 533, 677
MvaI CCWGG 1 cut(s) 243
MwoI GCNNNNNNNGC 2 cut(s) 503, 639
NciI CCSGG 5 cut(s) 17, 392, 464, 533, 677
NdeII GATC 3 cut(s) 66, 97, 330
NlaIII CATG 1 cut(s) 320
NmeAIII GCCGAG 1 cut(s) 129
NsbI TGCGCA 1 cut(s) 507
PaeR7I CTCGAG 1 cut(s) 269
PcsI WCGNNNNNNNCGW 2 cut(s) 156, 176
PfeI GAWTC 2 cut(s) 46, 211
PkrI GCNGC 1 cut(s) 76
PleI GAGTC 3 cut(s) 280, 665, 687
PpsI GAGTC 3 cut(s) 280, 665, 687
Psp6I CCWGG 1 cut(s) 241
PspGI CCWGG 1 cut(s) 241
PspPI GGNCC 1 cut(s) 340
PspXI VCTCGAGB 1 cut(s) 269
PsuI RGATCY 2 cut(s) 66, 97
RsaI GTAC 2 cut(s) 142, 455
RsaNI GTAC 2 cut(s) 141, 454
RseI CAYNNNNRTG 1 cut(s) 321
SalI GTCGAC 1 cut(s) 421
SaqAI TTAA 3 cut(s) 501, 563, 706
SatI GCNGC 1 cut(s) 75
Sau3AI GATC 3 cut(s) 66, 97, 330
Sau96I GGNCC 1 cut(s) 340
SchI GAGTC 3 cut(s) 281, 665, 687
ScrFI CCNGG 6 cut(s) 17, 243, 392, 464, 533, 677
SduI GDGCHC 1 cut(s) 150
SfaNI GCATC 3 cut(s) 13, 321, 415
Sfr274I CTCGAG 1 cut(s) 269
SlaI CTCGAG 1 cut(s) 269
SmiMI CAYNNNNRTG 1 cut(s) 321
SmlI CTYRAG 1 cut(s) 269
SmoI CTYRAG 1 cut(s) 269
Sse9I AATT 2 cut(s) 41, 470
SsiI CCGC 2 cut(s) 72, 75
StyD4I CCNGG 6 cut(s) 15, 241, 390, 462, 531, 675
TaaI ACNGT 4 cut(s) 145, 164, 616, 638
TaqI TCGA 5 cut(s) 5, 270, 294, 321, 422
TasI AATT 2 cut(s) 41, 470
TatI WGTACW 2 cut(s) 140, 453
TauI GCSGC 1 cut(s) 77
TfiI GAWTC 2 cut(s) 46, 211
Tru1I TTAA 3 cut(s) 501, 563, 706
Tru9I TTAA 3 cut(s) 501, 563, 706
TspDTI ATGAA 2 cut(s) 237, 449
XhoI CTCGAG 1 cut(s) 269
XmiI GTMKAC 1 cut(s) 422
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.