Rh1BG385400

Transcription initiation factor TFIID subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0018191
Physical Location & Seq
Reverse (-)
51352048 .. 51353847
1800 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG385400.1

Sequence Viewer

Length: 366 bp
ATGGTTGGTTTGTCAAACATCTTGGAGCGCATTGTAGAGTCCCTCAAAGATCGAATTGAAATCTCGTATCTTTTTCTAAAACCAGTATCCAAAAAGGAAGCTCCTGATTACCGGGACATCATAGAGCACCCAATGGATCTGTCGACAATCAAGGTGAAGGTTCGGAATATGGAGTACAAGAGCCGGGAGCAATTCAGACAAGGTGTGTGGCAAATTGCCTTTAATGCGCATAAATATAATGATGGGCGTAACCCGGATATCCCTCCACTTGCAGATGAGCTTTTAAACTTTTGTGACTATATGTTGGTTGAGAATGAAGAAAGCTTGACTGAAGCGGAAGCAGGCATTGAATATAGAGATATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000428 GO:0000988 GO:0000989 GO:0001076 GO:0001129 GO:0001132 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004402 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0006139 GO:0006325 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008080 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016591 GO:0016740 GO:0016746 GO:0016747 GO:0017025 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0022607 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034212 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043565 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051123 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0055029 GO:0060255 GO:0061695 GO:0061733 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070897 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 map03022
Pfam Domains
Protein Families
Bromodomain DUF3591 TBP-binding ubiquitin zf-CCHC_6

Protein Analysis

121

Amino Acids

14.23

Weight (kDa)

4.86

Isoelectric Point (pI)

37.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bromodomain PF00439 9 - 89 7.5e-19 Bromodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 228
AccI GTMKAC 1 cut(s) 143
AciI CCGC 1 cut(s) 335
AclWI GGATC 1 cut(s) 144
AcuI CTGAAG 1 cut(s) 351
AfaI GTAC 1 cut(s) 176
AgsI TTSAA 2 cut(s) 59, 350
AluBI AGCT 3 cut(s) 101, 280, 324
AluI AGCT 3 cut(s) 101, 280, 324
Alw21I GWGCWC 1 cut(s) 129
AlwI GGATC 1 cut(s) 144
AspLEI GCGC 2 cut(s) 30, 229
AsuC2I CCSGG 3 cut(s) 113, 185, 254
AsuHPI GGTGA 1 cut(s) 166
Bbv12I GWGCWC 1 cut(s) 129
BccI CCATC 1 cut(s) 236
BciVI GTATCC 1 cut(s) 97
BcnI CCSGG 3 cut(s) 113, 185, 254
BfuI GTATCC 1 cut(s) 97
Bme1390I CCNGG 3 cut(s) 113, 185, 254
BmrFI CCNGG 3 cut(s) 113, 185, 254
BpuMI CCSGG 3 cut(s) 113, 185, 254
Bse1I ACTGG 1 cut(s) 83
BseNI ACTGG 1 cut(s) 83
BsiHKAI GWGCWC 1 cut(s) 129
BsiSI CCGG 3 cut(s) 112, 184, 254
BslFI GGGAC 2 cut(s) 25, 128
BsmFI GGGAC 2 cut(s) 25, 128
Bsp1286I GDGCHC 1 cut(s) 129
Bsp143I GATC 2 cut(s) 49, 136
BspACI CCGC 1 cut(s) 335
BspPI GGATC 1 cut(s) 144
BsrI ACTGG 1 cut(s) 83
BssMI GATC 2 cut(s) 49, 136
BstC8I GCNNGC 1 cut(s) 343
BstHHI GCGC 2 cut(s) 30, 229
BstKTI GATC 2 cut(s) 52, 139
BstMBI GATC 2 cut(s) 49, 136
BstMWI GCNNNNNNNGC 1 cut(s) 224
BstSCI CCNGG 3 cut(s) 111, 183, 252
BstX2I RGATCY 1 cut(s) 136
BstYI RGATCY 1 cut(s) 136
BsuI GTATCC 1 cut(s) 97
Cac8I GCNNGC 1 cut(s) 343
CfoI GCGC 2 cut(s) 30, 229
Csp6I GTAC 1 cut(s) 175
CspCI CAANNNNNGTGG 2 cut(s) 188, 223
CviJI RGCY 4 cut(s) 101, 183, 280, 324
CviKI_1 RGCY 4 cut(s) 101, 183, 280, 324
CviQI GTAC 1 cut(s) 175
DpnI GATC 2 cut(s) 51, 138
DpnII GATC 2 cut(s) 49, 136
DraI TTTAAA 1 cut(s) 285
Eco32I GATATC 1 cut(s) 259
Eco57I CTGAAG 1 cut(s) 351
EcoRV GATATC 1 cut(s) 259
FaiI YATR 8 cut(s) 122, 170, 231, 237, 300, 302, 354, 362
FaqI GGGAC 2 cut(s) 25, 128
FblI GTMKAC 1 cut(s) 143
FspAI RTGCGCAY 1 cut(s) 228
FspI TGCGCA 1 cut(s) 228
GlaI GCGC 2 cut(s) 29, 228
HapII CCGG 3 cut(s) 112, 184, 254
HhaI GCGC 2 cut(s) 30, 229
Hin6I GCGC 2 cut(s) 28, 227
HinP1I GCGC 2 cut(s) 28, 227
HincII GTYRAC 1 cut(s) 144
HindII GTYRAC 1 cut(s) 144
HindIII AAGCTT 1 cut(s) 322
HinfI GANTC 1 cut(s) 38
HpaII CCGG 3 cut(s) 112, 184, 254
HphI GGTGA 1 cut(s) 166
Hpy166II GTNNAC 1 cut(s) 144
Hpy188I TCNGA 2 cut(s) 165, 197
Hpy188III TCNNGA 1 cut(s) 104
Hpy8I GTNNAC 1 cut(s) 144
HpyAV CCTTC 1 cut(s) 151
HpyCH4V TGCA 1 cut(s) 272
HpyF10VI GCNNNNNNNGC 1 cut(s) 224
HspAI GCGC 2 cut(s) 28, 227
Kzo9I GATC 2 cut(s) 49, 136
LmnI GCTCC 3 cut(s) 25, 106, 187
LpnPI CCDG 6 cut(s) 96, 117, 125, 197, 267, 327
MaeIII GTNAC 2 cut(s) 248, 293
MalI GATC 2 cut(s) 51, 138
MboI GATC 2 cut(s) 49, 136
MboII GAAGA 1 cut(s) 329
MflI RGATCY 1 cut(s) 136
MhlI GDGCHC 1 cut(s) 129
MluCI AATT 3 cut(s) 54, 191, 213
MlyI GAGTC 1 cut(s) 47
MnlI CCTC 2 cut(s) 53, 273
MseI TTAA 2 cut(s) 222, 284
MspI CCGG 3 cut(s) 112, 184, 254
MspR9I CCNGG 3 cut(s) 113, 185, 254
MwoI GCNNNNNNNGC 1 cut(s) 224
NciI CCSGG 3 cut(s) 113, 185, 254
NdeII GATC 2 cut(s) 49, 136
NmuCI GTSAC 1 cut(s) 293
NsbI TGCGCA 1 cut(s) 228
PleI GAGTC 1 cut(s) 46
PpsI GAGTC 1 cut(s) 46
PsuI RGATCY 1 cut(s) 136
RsaI GTAC 1 cut(s) 176
RsaNI GTAC 1 cut(s) 175
SalI GTCGAC 1 cut(s) 142
SaqAI TTAA 2 cut(s) 222, 284
Sau3AI GATC 2 cut(s) 49, 136
SchI GAGTC 1 cut(s) 47
ScrFI CCNGG 3 cut(s) 113, 185, 254
SduI GDGCHC 1 cut(s) 129
SetI ASST 6 cut(s) 103, 156, 162, 205, 282, 326
Sse9I AATT 3 cut(s) 54, 191, 213
SsiI CCGC 1 cut(s) 335
StyD4I CCNGG 3 cut(s) 111, 183, 252
TaqI TCGA 2 cut(s) 52, 143
TasI AATT 3 cut(s) 54, 191, 213
TatI WGTACW 1 cut(s) 174
Tru1I TTAA 2 cut(s) 222, 284
Tru9I TTAA 2 cut(s) 222, 284
TseFI GTSAC 1 cut(s) 293
Tsp45I GTSAC 1 cut(s) 293
TspDTI ATGAA 1 cut(s) 330
XmiI GTMKAC 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.