Rh1DG131200

Transcription initiation factor TFIID subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0018191
Physical Location & Seq
Forward (+)
27424296 .. 27424900
605 bp
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UTR
Exon/CDS
Intron
Rh1DG131200.1

Sequence Viewer

Length: 465 bp
ATGCCAGAGAGAGATCGAGGCACCAAAAGGAGGCCAGTTGTTGAGTTAGGAAGGTATGGTGGAGAATCTGCCCTAAGTACAAAGCGTCGTAGAGGAGGAGAAGTTAGTTTGGCAAACATCTTGGAGCATATTGTAGAAACCCTCAAAGATCGAATTGAAGTTTCTTATCTTTTTCTTAAACCTGTGTCCAAAAAGGAAGCTCCAGATTACCTGAACTTCGTAGAGCGCCCCATGGATCTATCAACAATTCGGGAGAAGGTAAGGAAAATGGAGTACAAGAGCCGGGAGCAATTCAGGCATGACGTTGCTCAGATCACCATCAATGCCCACTTATATAATGACTGTCATAATCCAGGTATCCCTCCCCTTGCAGATCAACTTTTAGAGATCTGTGACCATATGCTGATTGAGAATGATGAAAGCTTGACTGAAGCTGAAGCAGGCAATGAATCTGTAGATAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000428 GO:0000988 GO:0000989 GO:0001076 GO:0001129 GO:0001132 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004402 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0006139 GO:0006325 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008080 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016591 GO:0016740 GO:0016746 GO:0016747 GO:0017025 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0022607 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034212 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043565 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051123 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0055029 GO:0060255 GO:0061695 GO:0061733 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070897 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 map03022
Pfam Domains
Protein Families
Bromodomain DUF3591 TBP-binding ubiquitin zf-CCHC_6

Protein Analysis

154

Amino Acids

17.7

Weight (kDa)

5.59

Isoelectric Point (pI)

54.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bromodomain PF00439 42 - 114 5.6e-20 Bromodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 20
AclWI GGATC 1 cut(s) 243
AcuI CTGAAG 2 cut(s) 450, 456
AfaI GTAC 2 cut(s) 79, 275
AfiI CCNNNNNNNGG 1 cut(s) 30
AgsI TTSAA 1 cut(s) 158
AjnI CCWGG 1 cut(s) 352
AluBI AGCT 3 cut(s) 200, 423, 434
AluI AGCT 3 cut(s) 200, 423, 434
AlwI GGATC 1 cut(s) 243
AoxI GGCC 1 cut(s) 32
AspLEI GCGC 1 cut(s) 228
AsuC2I CCSGG 1 cut(s) 284
AsuHPI GGTGA 1 cut(s) 307
BanI GGYRCC 1 cut(s) 20
BccI CCATC 1 cut(s) 326
BciT130I CCWGG 1 cut(s) 354
BciVI GTATCC 1 cut(s) 368
BcnI CCSGG 1 cut(s) 284
BfmI CTRYAG 1 cut(s) 453
BfoI RGCGCY 1 cut(s) 229
BfuI GTATCC 1 cut(s) 368
BglII AGATCT 1 cut(s) 387
Bme1390I CCNGG 2 cut(s) 284, 354
BmiI GGNNCC 1 cut(s) 22
BmrFI CCNGG 2 cut(s) 284, 354
BpmI CTGGAG 1 cut(s) 186
BpuMI CCSGG 1 cut(s) 284
BsaBI GATNNNNATC 1 cut(s) 317
BsaJI CCNNGG 1 cut(s) 231
BsaXI ACNNNNNCTCC 2 cut(s) 87, 117
Bsc4I CCNNNNNNNGG 1 cut(s) 30
Bse1I ACTGG 1 cut(s) 35
Bse3DI GCAATG 1 cut(s) 451
Bse8I GATNNNNATC 1 cut(s) 317
BseBI CCWGG 1 cut(s) 354
BseDI CCNNGG 1 cut(s) 231
BseJI GATNNNNATC 1 cut(s) 317
BseLI CCNNNNNNNGG 1 cut(s) 30
BseMI GCAATG 1 cut(s) 451
BseMII CTCAG 1 cut(s) 323
BseNI ACTGG 1 cut(s) 35
BseRI GAGGAG 2 cut(s) 108, 111
BshFI GGCC 1 cut(s) 34
BshNI GGYRCC 1 cut(s) 20
BsiSI CCGG 1 cut(s) 283
BslI CCNNNNNNNGG 1 cut(s) 30
BsnI GGCC 1 cut(s) 34
Bsp143I GATC 6 cut(s) 13, 148, 235, 312, 373, 387
Bsp19I CCATGG 1 cut(s) 231
BspANI GGCC 1 cut(s) 34
BspCNI CTCAG 1 cut(s) 322
BspLI GGNNCC 1 cut(s) 22
BspPI GGATC 1 cut(s) 243
BspT107I GGYRCC 1 cut(s) 20
BsrDI GCAATG 1 cut(s) 451
BsrI ACTGG 1 cut(s) 35
BssECI CCNNGG 1 cut(s) 231
BssMI GATC 6 cut(s) 13, 148, 235, 312, 373, 387
BssT1I CCWWGG 1 cut(s) 231
Bst2UI CCWGG 1 cut(s) 354
Bst4CI ACNGT 1 cut(s) 344
BstC8I GCNNGC 1 cut(s) 442
BstDEI CTNAG 2 cut(s) 74, 309
BstDSI CCRYGG 1 cut(s) 231
BstH2I RGCGCY 1 cut(s) 229
BstHHI GCGC 1 cut(s) 228
BstKTI GATC 6 cut(s) 16, 151, 238, 315, 376, 390
BstMBI GATC 6 cut(s) 13, 148, 235, 312, 373, 387
BstMWI GCNNNNNNNGC 1 cut(s) 295
BstNI CCWGG 1 cut(s) 354
BstSCI CCNGG 2 cut(s) 282, 352
BstSFI CTRYAG 1 cut(s) 453
BstX2I RGATCY 2 cut(s) 235, 387
BstYI RGATCY 2 cut(s) 235, 387
BsuI GTATCC 1 cut(s) 368
BsuRI GGCC 1 cut(s) 34
BtgI CCRYGG 1 cut(s) 231
Cac8I GCNNGC 1 cut(s) 442
CfoI GCGC 1 cut(s) 228
CseI GACGC 1 cut(s) 74
Csp6I GTAC 2 cut(s) 78, 274
CviAII CATG 2 cut(s) 232, 299
CviJI RGCY 5 cut(s) 34, 200, 282, 423, 434
CviKI_1 RGCY 5 cut(s) 34, 200, 282, 423, 434
CviQI GTAC 2 cut(s) 78, 274
DdeI CTNAG 2 cut(s) 74, 309
DpnI GATC 6 cut(s) 15, 150, 237, 314, 375, 389
DpnII GATC 6 cut(s) 13, 148, 235, 312, 373, 387
Eco130I CCWWGG 1 cut(s) 231
Eco57I CTGAAG 2 cut(s) 450, 456
EcoRII CCWGG 1 cut(s) 352
EcoT14I CCWWGG 1 cut(s) 231
ErhI CCWWGG 1 cut(s) 231
FaeI CATG 2 cut(s) 235, 302
FaiI YATR 9 cut(s) 57, 129, 233, 300, 334, 336, 348, 399, 401
FatI CATG 2 cut(s) 231, 298
FauNDI CATATG 1 cut(s) 399
GlaI GCGC 1 cut(s) 227
GsuI CTGGAG 1 cut(s) 186
HaeII RGCGCY 1 cut(s) 229
HaeIII GGCC 1 cut(s) 34
HapII CCGG 1 cut(s) 283
HgaI GACGC 1 cut(s) 74
HhaI GCGC 1 cut(s) 228
Hin1II CATG 2 cut(s) 235, 302
Hin6I GCGC 1 cut(s) 226
HinP1I GCGC 1 cut(s) 226
HindIII AAGCTT 1 cut(s) 421
HinfI GANTC 2 cut(s) 65, 449
HpaII CCGG 1 cut(s) 283
HphI GGTGA 1 cut(s) 307
Hpy188I TCNGA 1 cut(s) 312
Hpy188III TCNNGA 2 cut(s) 203, 251
Hpy99I CGWCG 1 cut(s) 90
HpyAV CCTTC 2 cut(s) 45, 250
HpyCH4III ACNGT 1 cut(s) 344
HpyCH4IV ACGT 1 cut(s) 303
HpyCH4V TGCA 1 cut(s) 371
HpyF10VI GCNNNNNNNGC 1 cut(s) 295
HpyF3I CTNAG 2 cut(s) 74, 309
HpySE526I ACGT 1 cut(s) 303
Hsp92II CATG 2 cut(s) 235, 302
HspAI GCGC 1 cut(s) 226
Kzo9I GATC 6 cut(s) 13, 148, 235, 312, 373, 387
LmnI GCTCC 3 cut(s) 124, 205, 286
MaeII ACGT 1 cut(s) 303
MaeIII GTNAC 1 cut(s) 392
MalI GATC 6 cut(s) 15, 150, 237, 314, 375, 389
MboI GATC 6 cut(s) 13, 148, 235, 312, 373, 387
MflI RGATCY 2 cut(s) 235, 387
MluCI AATT 3 cut(s) 153, 246, 290
MnlI CCTC 6 cut(s) 11, 24, 86, 89, 152, 372
MseI TTAA 1 cut(s) 177
MspI CCGG 1 cut(s) 283
MspR9I CCNGG 2 cut(s) 284, 354
MvaI CCWGG 1 cut(s) 354
MwoI GCNNNNNNNGC 1 cut(s) 295
NciI CCSGG 1 cut(s) 284
NcoI CCATGG 1 cut(s) 231
NdeI CATATG 1 cut(s) 399
NdeII GATC 6 cut(s) 13, 148, 235, 312, 373, 387
NlaIII CATG 2 cut(s) 235, 302
NlaIV GGNNCC 1 cut(s) 22
NmuCI GTSAC 1 cut(s) 392
PfeI GAWTC 2 cut(s) 65, 449
Psp6I CCWGG 1 cut(s) 352
PspGI CCWGG 1 cut(s) 352
PspN4I GGNNCC 1 cut(s) 22
PsuI RGATCY 2 cut(s) 235, 387
RsaI GTAC 2 cut(s) 79, 275
RsaNI GTAC 2 cut(s) 78, 274
SaqAI TTAA 1 cut(s) 177
Sau3AI GATC 6 cut(s) 13, 148, 235, 312, 373, 387
ScrFI CCNGG 2 cut(s) 284, 354
SetI ASST 9 cut(s) 56, 184, 202, 213, 261, 306, 358, 425, 436
SfcI CTRYAG 1 cut(s) 453
Sse9I AATT 3 cut(s) 153, 246, 290
StyD4I CCNGG 2 cut(s) 282, 352
StyI CCWWGG 1 cut(s) 231
TaaI ACNGT 1 cut(s) 344
TaiI ACGT 1 cut(s) 306
TaqI TCGA 2 cut(s) 16, 151
TasI AATT 3 cut(s) 153, 246, 290
TatI WGTACW 2 cut(s) 77, 273
TfiI GAWTC 2 cut(s) 65, 449
Tru1I TTAA 1 cut(s) 177
Tru9I TTAA 1 cut(s) 177
TseFI GTSAC 1 cut(s) 392
Tsp45I GTSAC 1 cut(s) 392
TspDTI ATGAA 2 cut(s) 432, 462
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.