Rh5DG099800

Transcription initiation factor TFIID subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0018191
Physical Location & Seq
Forward (+)
9150301 .. 9151364
1064 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG099800.1

Sequence Viewer

Length: 537 bp
ATGATGCATAGAAGTCCACAGATAAACAATGACTATTTAGAGGACTCACGGACAAGAAGATTTGGTAAAAGGATATTAAAAAGAGATCAGGGGGCCAAAAGGAGGCCAACTGTTGATTTGGGAAGTTATGGTGGAGGTTTTGCCTCAACTACTAAGCGTCGTAAAGGAGGAGAGGTTGGTTTGGCAAACATCTTGGAGCGCATTGTAGAATCCCTCAAAGATCGAATTGAAATCTCGTATCTTTTTCTAAAACCAGTATCCAAAAAGGAAGCTCCTGATTACCGGGACATCATAGAGCACCCAATGGATCTGTCGACAATCAAGGTGAAGGTTCGGAATATGGAGTACAAGAGCCGGGAGCAATTCAGACAGGATGTGTGGCAGATTGCCTTTAATGCGCATAAATATAATGATGGGCGTAACTCGGATATCCCTCCACTTGCAGATGAGCTTTTAAACTCCTGTGAGTATATGTTGGTTGAGAATGAAGAAAGCTTGACTGAAGCGGAAGCAGGCATTGAATATAGAGATATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000428 GO:0000988 GO:0000989 GO:0001076 GO:0001129 GO:0001132 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004402 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0006139 GO:0006325 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008080 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016591 GO:0016740 GO:0016746 GO:0016747 GO:0017025 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0022607 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034212 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043565 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051123 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0055029 GO:0060255 GO:0061695 GO:0061733 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070897 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 map03022
Pfam Domains
Protein Families
Bromodomain DUF3591 TBP-binding ubiquitin zf-CCHC_6

Protein Analysis

178

Amino Acids

20.72

Weight (kDa)

7.8

Isoelectric Point (pI)

61.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bromodomain PF00439 66 - 149 2.4e-20 Bromodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 399
AccI GTMKAC 1 cut(s) 314
AciI CCGC 1 cut(s) 506
AclWI GGATC 1 cut(s) 315
AcuI CTGAAG 1 cut(s) 522
AfaI GTAC 1 cut(s) 347
AfiI CCNNNNNNNGG 1 cut(s) 102
AgsI TTSAA 2 cut(s) 230, 521
AluBI AGCT 3 cut(s) 272, 451, 495
AluI AGCT 3 cut(s) 272, 451, 495
Alw21I GWGCWC 1 cut(s) 300
AlwI GGATC 1 cut(s) 315
AoxI GGCC 2 cut(s) 93, 104
AspLEI GCGC 2 cut(s) 201, 400
AspS9I GGNCC 1 cut(s) 93
AsuC2I CCSGG 2 cut(s) 284, 356
AsuHPI GGTGA 1 cut(s) 337
Bbv12I GWGCWC 1 cut(s) 300
BccI CCATC 1 cut(s) 407
BciVI GTATCC 1 cut(s) 268
BcnI CCSGG 2 cut(s) 284, 356
BfuI GTATCC 1 cut(s) 268
Bme1390I CCNGG 2 cut(s) 284, 356
BmgT120I GGNCC 1 cut(s) 93
BmiI GGNNCC 1 cut(s) 94
BmrFI CCNGG 2 cut(s) 284, 356
BpuMI CCSGG 2 cut(s) 284, 356
BsaXI ACNNNNNCTCC 2 cut(s) 159, 189
Bsc4I CCNNNNNNNGG 1 cut(s) 102
Bse1I ACTGG 1 cut(s) 254
BseGI GGATG 1 cut(s) 379
BseLI CCNNNNNNNGG 1 cut(s) 102
BseNI ACTGG 1 cut(s) 254
BseRI GAGGAG 1 cut(s) 183
BshFI GGCC 2 cut(s) 95, 106
BsiHKAI GWGCWC 1 cut(s) 300
BsiSI CCGG 2 cut(s) 283, 355
BslFI GGGAC 1 cut(s) 299
BslI CCNNNNNNNGG 1 cut(s) 102
BsmFI GGGAC 1 cut(s) 299
BsnI GGCC 2 cut(s) 95, 106
Bsp1286I GDGCHC 1 cut(s) 300
Bsp143I GATC 3 cut(s) 85, 220, 307
BspACI CCGC 1 cut(s) 506
BspANI GGCC 2 cut(s) 95, 106
BspLI GGNNCC 1 cut(s) 94
BspPI GGATC 1 cut(s) 315
BsrI ACTGG 1 cut(s) 254
BssMI GATC 3 cut(s) 85, 220, 307
Bst4CI ACNGT 1 cut(s) 112
BstC8I GCNNGC 1 cut(s) 514
BstDEI CTNAG 1 cut(s) 153
BstF5I GGATG 1 cut(s) 379
BstHHI GCGC 2 cut(s) 201, 400
BstKTI GATC 3 cut(s) 88, 223, 310
BstMBI GATC 3 cut(s) 85, 220, 307
BstMWI GCNNNNNNNGC 1 cut(s) 395
BstSCI CCNGG 2 cut(s) 282, 354
BstX2I RGATCY 1 cut(s) 307
BstYI RGATCY 1 cut(s) 307
BsuI GTATCC 1 cut(s) 268
BsuRI GGCC 2 cut(s) 95, 106
BtsCI GGATG 1 cut(s) 379
Cac8I GCNNGC 1 cut(s) 514
CfoI GCGC 2 cut(s) 201, 400
Cfr13I GGNCC 1 cut(s) 93
CseI GACGC 1 cut(s) 146
Csp6I GTAC 1 cut(s) 346
CviJI RGCY 6 cut(s) 95, 106, 272, 354, 451, 495
CviKI_1 RGCY 6 cut(s) 95, 106, 272, 354, 451, 495
CviQI GTAC 1 cut(s) 346
DdeI CTNAG 1 cut(s) 153
DpnI GATC 3 cut(s) 87, 222, 309
DpnII GATC 3 cut(s) 85, 220, 307
DraI TTTAAA 1 cut(s) 456
Eco32I GATATC 1 cut(s) 430
Eco57I CTGAAG 1 cut(s) 522
EcoRV GATATC 1 cut(s) 430
EcoT22I ATGCAT 1 cut(s) 9
FaqI GGGAC 1 cut(s) 299
FblI GTMKAC 1 cut(s) 314
FokI GGATG 1 cut(s) 386
FspAI RTGCGCAY 1 cut(s) 399
FspI TGCGCA 1 cut(s) 399
GlaI GCGC 2 cut(s) 200, 399
HaeIII GGCC 2 cut(s) 95, 106
HapII CCGG 2 cut(s) 283, 355
HgaI GACGC 1 cut(s) 146
HhaI GCGC 2 cut(s) 201, 400
Hin6I GCGC 2 cut(s) 199, 398
HinP1I GCGC 2 cut(s) 199, 398
HincII GTYRAC 1 cut(s) 315
HindII GTYRAC 1 cut(s) 315
HindIII AAGCTT 1 cut(s) 493
HinfI GANTC 2 cut(s) 44, 209
HpaII CCGG 2 cut(s) 283, 355
HphI GGTGA 1 cut(s) 337
Hpy166II GTNNAC 2 cut(s) 17, 315
Hpy188I TCNGA 3 cut(s) 336, 368, 427
Hpy188III TCNNGA 1 cut(s) 275
Hpy8I GTNNAC 2 cut(s) 17, 315
Hpy99I CGWCG 1 cut(s) 162
HpyAV CCTTC 1 cut(s) 322
HpyCH4III ACNGT 1 cut(s) 112
HpyCH4V TGCA 2 cut(s) 7, 443
HpyF10VI GCNNNNNNNGC 1 cut(s) 395
HpyF3I CTNAG 1 cut(s) 153
HspAI GCGC 2 cut(s) 199, 398
Kzo9I GATC 3 cut(s) 85, 220, 307
LmnI GCTCC 3 cut(s) 196, 277, 358
LpnPI CCDG 8 cut(s) 74, 267, 288, 296, 356, 368, 475, 498
MaeIII GTNAC 1 cut(s) 419
MalI GATC 3 cut(s) 87, 222, 309
MboI GATC 3 cut(s) 85, 220, 307
MboII GAAGA 2 cut(s) 69, 500
MflI RGATCY 1 cut(s) 307
MhlI GDGCHC 1 cut(s) 300
MluCI AATT 2 cut(s) 225, 362
MlyI GAGTC 1 cut(s) 38
MnlI CCTC 8 cut(s) 34, 96, 128, 154, 161, 166, 224, 444
Mph1103I ATGCAT 1 cut(s) 9
MseI TTAA 3 cut(s) 77, 393, 455
MspI CCGG 2 cut(s) 283, 355
MspR9I CCNGG 2 cut(s) 284, 356
MwoI GCNNNNNNNGC 1 cut(s) 395
NciI CCSGG 2 cut(s) 284, 356
NdeII GATC 3 cut(s) 85, 220, 307
NlaIV GGNNCC 1 cut(s) 94
NsbI TGCGCA 1 cut(s) 399
NsiI ATGCAT 1 cut(s) 9
PfeI GAWTC 1 cut(s) 209
PleI GAGTC 1 cut(s) 38
PpsI GAGTC 1 cut(s) 38
PspN4I GGNNCC 1 cut(s) 94
PspPI GGNCC 1 cut(s) 93
PsuI RGATCY 1 cut(s) 307
RsaI GTAC 1 cut(s) 347
RsaNI GTAC 1 cut(s) 346
SalI GTCGAC 1 cut(s) 313
SaqAI TTAA 3 cut(s) 77, 393, 455
Sau3AI GATC 3 cut(s) 85, 220, 307
Sau96I GGNCC 1 cut(s) 93
SchI GAGTC 1 cut(s) 38
ScrFI CCNGG 2 cut(s) 284, 356
SduI GDGCHC 1 cut(s) 300
SetI ASST 7 cut(s) 139, 177, 274, 327, 333, 453, 497
Sse9I AATT 2 cut(s) 225, 362
SsiI CCGC 1 cut(s) 506
StyD4I CCNGG 2 cut(s) 282, 354
TaaI ACNGT 1 cut(s) 112
TaqI TCGA 2 cut(s) 223, 314
TasI AATT 2 cut(s) 225, 362
TatI WGTACW 1 cut(s) 345
TfiI GAWTC 1 cut(s) 209
Tru1I TTAA 3 cut(s) 77, 393, 455
Tru9I TTAA 3 cut(s) 77, 393, 455
TspDTI ATGAA 1 cut(s) 501
TspGWI ACGGA 1 cut(s) 64
XmiI GTMKAC 1 cut(s) 314
Zsp2I ATGCAT 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.