Rh5CG113000

Transcription initiation factor TFIID subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0018191
Physical Location & Seq
Forward (+)
9262913 .. 9265037
2125 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG113000.1

Sequence Viewer

Length: 1197 bp
ATGTACTTGGAAGGTTCTGAGGTTGAAAACCTTGGTCTGACCTCAAAGGTTGTTCCATTGACACTCAAAGTTGCGTTTGGTGAAAAGTTTCCTGATAAACAGGCTCCTGGAGAAACAGAGAGTTATCAGAATCCACTCACATCTGATCTTGAAACTGGGAATCCCGCTGTTAAGGTTAGTAAAATAATAATTTCTAACAAGACAAAACCTGGAGGGGTATCAGTTGAATCTCATAAACCCCCTATTGGGATATGGCCTCCCACAGATATAGATAGGGGTCATGTTAAGTCACAAAAGCCATTGCCAACTATAGTCATACGGCCTCCAGCAACCACAGTTAGAGATCATGTGGAATCTCAAAAGCCCTCTGTTGCTAAACTGCCATTAGTTGAAGCTCACAAAGAGCAACATCATCAGAAAAGACATGAGAAGCTGAATAGCATGTATTTTCCTACTGAAGCAGCAAAAAAGAAAGCAAGAGATGATAGAAGATTGGGGGAGGAGCAAGAGAAACGAAGAATTGAAGAGAGTGCCAGGAGGCTGTATGACAAGGAAATTAGGATGGCAAAGGAGCGAGAAAGACGTGCAGAGCTCAAAAAATATGAAGCAGCCATCAAACAAGAGAGAGAGGAAGAACTCCAGAAAGTGAAGAAGAATAAAATGATGCATAGAAGTCCACAGATAAACAATGACTATTTAGAGGACTCGCGGACAAGAAGATTTGGTAAAAGGATGCCAGAAAGAGATCAGGGGGCCAAAAGGAGGCCAACTGTTGATTTGGGAAGTTATGGTGGAGGTTATGCCTCAACTACTAAGCGTCATAAAGGAGGAGAGGTTGGTTTGGCAAACATCTTGGAGCGCATTGTAGAGTCCCTCAAAGATCGAATTGAAATCTCGTATCTTTTTCTAAAACCAGTATCCAAAAAGGAAGCTCCTGATTACCGGGACATCATAGAGCACCCAATGGATCTGTCGACAATCAAGGTGAAGGTTCGGAATATGGAGTACAAGAGCCGGGAGCAATTCAGACAGGATGTGCGGCAGATTGCCTTTAATGCGCATAAATATAATGATGGGCGTAACCCGGATATCCCTCCACTTGCAGATGAGCTTTTAAACTTTTGTGACTATATGTTGGTTGAGAATGAAGAAAGCTTGACTGAAGCGGAAGCAGGCATTGAATATACAGATATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000428 GO:0000988 GO:0000989 GO:0001076 GO:0001129 GO:0001132 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004402 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0006139 GO:0006325 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008080 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016591 GO:0016740 GO:0016746 GO:0016747 GO:0017025 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0022607 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034212 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043565 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051123 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0055029 GO:0060255 GO:0061695 GO:0061733 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070897 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 map03022
Pfam Domains
Protein Families
Bromodomain DUF3591 TBP-binding ubiquitin zf-CCHC_6

Protein Analysis

398

Amino Acids

45.84

Weight (kDa)

9.12

Isoelectric Point (pI)

60.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bromodomain PF00439 286 - 365 2.7e-20 Bromodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1059
AccI GTMKAC 1 cut(s) 974
AccII CGCG 1 cut(s) 709
AciI CCGC 4 cut(s) 165, 709, 1039, 1166
AclWI GGATC 1 cut(s) 975
AcuI CTGAAG 2 cut(s) 477, 1182
AfaI GTAC 2 cut(s) 5, 1007
AfiI CCNNNNNNNGG 3 cut(s) 245, 246, 762
AgsI TTSAA 7 cut(s) 26, 152, 227, 392, 524, 890, 1181
AjiI CACGTC 1 cut(s) 584
AjnI CCWGG 3 cut(s) 106, 208, 533
AluBI AGCT 6 cut(s) 395, 433, 592, 932, 1111, 1155
AluI AGCT 6 cut(s) 395, 433, 592, 932, 1111, 1155
Alw21I GWGCWC 2 cut(s) 594, 960
AlwI GGATC 1 cut(s) 975
AoxI GGCC 4 cut(s) 254, 320, 753, 764
ApeKI GCWGC 2 cut(s) 461, 608
Asp700I GAANNNNTTC 1 cut(s) 87
AspLEI GCGC 2 cut(s) 861, 1060
AspS9I GGNCC 1 cut(s) 753
AsuC2I CCSGG 3 cut(s) 944, 1016, 1085
AsuHPI GGTGA 2 cut(s) 92, 997
BanII GRGCYC 1 cut(s) 594
Bbv12I GWGCWC 2 cut(s) 594, 960
BbvI GCAGC 2 cut(s) 473, 620
BccI CCATC 3 cut(s) 556, 620, 1067
BceAI ACGGC 1 cut(s) 335
BciT130I CCWGG 3 cut(s) 108, 210, 535
BciVI GTATCC 1 cut(s) 928
BcnI CCSGG 3 cut(s) 944, 1016, 1085
BfmI CTRYAG 1 cut(s) 309
BfuI GTATCC 1 cut(s) 928
BisI GCNGC 3 cut(s) 462, 609, 1040
BlsI GCNGC 3 cut(s) 463, 610, 1041
Bme1390I CCNGG 6 cut(s) 108, 210, 535, 944, 1016, 1085
BmgBI CACGTC 1 cut(s) 584
BmgT120I GGNCC 1 cut(s) 753
BmiI GGNNCC 2 cut(s) 105, 754
BmrFI CCNGG 6 cut(s) 108, 210, 535, 944, 1016, 1085
BmrI ACTGGG 1 cut(s) 165
BmsI GCATC 2 cut(s) 654, 723
BmuI ACTGGG 1 cut(s) 165
BpmI CTGGAG 4 cut(s) 129, 231, 309, 623
BpuMI CCSGG 3 cut(s) 944, 1016, 1085
BsaJI CCNNGG 1 cut(s) 31
BsaXI ACNNNNNCTCC 2 cut(s) 819, 849
Bsc4I CCNNNNNNNGG 3 cut(s) 245, 246, 762
Bse1I ACTGG 2 cut(s) 160, 914
Bse3DI GCAATG 1 cut(s) 299
BseBI CCWGG 3 cut(s) 108, 210, 535
BseDI CCNNGG 1 cut(s) 31
BseGI GGATG 3 cut(s) 567, 738, 1039
BseLI CCNNNNNNNGG 3 cut(s) 245, 246, 762
BseMI GCAATG 1 cut(s) 299
BseMII CTCAG 1 cut(s) 9
BseNI ACTGG 2 cut(s) 160, 914
BseRI GAGGAG 2 cut(s) 515, 843
BseXI GCAGC 2 cut(s) 473, 620
BsgI GTGCAG 1 cut(s) 606
Bsh1236I CGCG 1 cut(s) 709
BshFI GGCC 4 cut(s) 256, 322, 755, 766
BsiHKAI GWGCWC 2 cut(s) 594, 960
BsiSI CCGG 3 cut(s) 943, 1015, 1085
BslFI GGGAC 2 cut(s) 856, 959
BslI CCNNNNNNNGG 3 cut(s) 245, 246, 762
BsmFI GGGAC 2 cut(s) 856, 959
BsnI GGCC 4 cut(s) 256, 322, 755, 766
Bsp1286I GDGCHC 2 cut(s) 594, 960
Bsp143I GATC 5 cut(s) 145, 343, 745, 880, 967
BspACI CCGC 4 cut(s) 165, 709, 1039, 1166
BspANI GGCC 4 cut(s) 256, 322, 755, 766
BspCNI CTCAG 1 cut(s) 10
BspFNI CGCG 1 cut(s) 709
BspLI GGNNCC 2 cut(s) 105, 754
BspPI GGATC 1 cut(s) 975
BsrDI GCAATG 1 cut(s) 299
BsrI ACTGG 2 cut(s) 160, 914
BssECI CCNNGG 1 cut(s) 31
BssMI GATC 5 cut(s) 145, 343, 745, 880, 967
BssT1I CCWWGG 1 cut(s) 31
Bst2UI CCWGG 3 cut(s) 108, 210, 535
Bst4CI ACNGT 2 cut(s) 337, 772
Bst6I CTCTTC 1 cut(s) 519
BstC8I GCNNGC 1 cut(s) 1174
BstDEI CTNAG 2 cut(s) 18, 813
BstF5I GGATG 3 cut(s) 567, 738, 1039
BstFNI CGCG 1 cut(s) 709
BstHHI GCGC 2 cut(s) 861, 1060
BstKTI GATC 5 cut(s) 148, 346, 748, 883, 970
BstMBI GATC 5 cut(s) 145, 343, 745, 880, 967
BstMWI GCNNNNNNNGC 1 cut(s) 1055
BstNI CCWGG 3 cut(s) 108, 210, 535
BstNSI RCATGY 1 cut(s) 445
BstSCI CCNGG 6 cut(s) 106, 208, 533, 942, 1014, 1083
BstSFI CTRYAG 1 cut(s) 309
BstUI CGCG 1 cut(s) 709
BstV1I GCAGC 2 cut(s) 473, 620
BstX2I RGATCY 1 cut(s) 967
BstYI RGATCY 1 cut(s) 967
BsuI GTATCC 1 cut(s) 928
BsuRI GGCC 4 cut(s) 256, 322, 755, 766
BtrI CACGTC 1 cut(s) 584
BtsCI GGATG 3 cut(s) 567, 738, 1039
Cac8I GCNNGC 1 cut(s) 1174
CfoI GCGC 2 cut(s) 861, 1060
Cfr13I GGNCC 1 cut(s) 753
CseI GACGC 1 cut(s) 806
Csp6I GTAC 2 cut(s) 4, 1006
CviAII CATG 4 cut(s) 281, 347, 425, 442
CviQI GTAC 2 cut(s) 4, 1006
DdeI CTNAG 2 cut(s) 18, 813
DpnI GATC 5 cut(s) 147, 345, 747, 882, 969
DpnII GATC 5 cut(s) 145, 343, 745, 880, 967
DraI TTTAAA 1 cut(s) 1116
Eam1104I CTCTTC 1 cut(s) 519
EarI CTCTTC 1 cut(s) 519
Ecl136II GAGCTC 1 cut(s) 592
Eco130I CCWWGG 1 cut(s) 31
Eco24I GRGCYC 1 cut(s) 594
Eco32I GATATC 1 cut(s) 1090
Eco53kI GAGCTC 1 cut(s) 592
Eco57I CTGAAG 2 cut(s) 477, 1182
EcoICRI GAGCTC 1 cut(s) 592
EcoRII CCWGG 3 cut(s) 106, 208, 533
EcoRV GATATC 1 cut(s) 1090
EcoT14I CCWWGG 1 cut(s) 31
EcoT22I ATGCAT 1 cut(s) 669
EcoT38I GRGCYC 1 cut(s) 594
ErhI CCWWGG 1 cut(s) 31
FaeI CATG 4 cut(s) 284, 350, 428, 445
FaqI GGGAC 2 cut(s) 856, 959
FatI CATG 4 cut(s) 280, 346, 424, 441
FauI CCCGC 1 cut(s) 172
FblI GTMKAC 1 cut(s) 974
Fnu4HI GCNGC 3 cut(s) 462, 609, 1040
FokI GGATG 3 cut(s) 574, 745, 1046
FriOI GRGCYC 1 cut(s) 594
Fsp4HI GCNGC 3 cut(s) 462, 609, 1040
FspAI RTGCGCAY 1 cut(s) 1059
FspI TGCGCA 1 cut(s) 1059
GlaI GCGC 2 cut(s) 860, 1059
GluI GCNGC 3 cut(s) 462, 609, 1040
GsuI CTGGAG 4 cut(s) 129, 231, 309, 623
HaeIII GGCC 4 cut(s) 256, 322, 755, 766
HapII CCGG 3 cut(s) 943, 1015, 1085
HgaI GACGC 1 cut(s) 806
HhaI GCGC 2 cut(s) 861, 1060
Hin1II CATG 4 cut(s) 284, 350, 428, 445
Hin6I GCGC 2 cut(s) 859, 1058
HinP1I GCGC 2 cut(s) 859, 1058
HincII GTYRAC 1 cut(s) 975
HindII GTYRAC 1 cut(s) 975
HindIII AAGCTT 1 cut(s) 1153
HinfI GANTC 6 cut(s) 130, 160, 227, 353, 704, 869
HpaII CCGG 3 cut(s) 943, 1015, 1085
HphI GGTGA 2 cut(s) 92, 997
Hpy166II GTNNAC 2 cut(s) 677, 975
Hpy188I TCNGA 7 cut(s) 19, 39, 129, 145, 417, 996, 1028
Hpy188III TCNNGA 4 cut(s) 92, 149, 640, 935
Hpy8I GTNNAC 2 cut(s) 677, 975
HpyAV CCTTC 2 cut(s) 5, 982
HpyCH4III ACNGT 2 cut(s) 337, 772
HpyCH4IV ACGT 1 cut(s) 583
HpyCH4V TGCA 3 cut(s) 587, 667, 1103
HpyF10VI GCNNNNNNNGC 1 cut(s) 1055
HpyF3I CTNAG 2 cut(s) 18, 813
HpySE526I ACGT 1 cut(s) 583
Hsp92II CATG 4 cut(s) 284, 350, 428, 445
HspAI GCGC 2 cut(s) 859, 1058
Kzo9I GATC 5 cut(s) 145, 343, 745, 880, 967
LmnI GCTCC 6 cut(s) 109, 502, 571, 856, 937, 1018
Lsp1109I GCAGC 2 cut(s) 473, 620
LweI GCATC 2 cut(s) 654, 723
MaeII ACGT 1 cut(s) 583
MaeIII GTNAC 3 cut(s) 288, 1079, 1124
MalI GATC 5 cut(s) 147, 345, 747, 882, 969
MboI GATC 5 cut(s) 145, 343, 745, 880, 967
MboII GAAGA 8 cut(s) 501, 528, 536, 644, 661, 664, 729, 1160
MflI RGATCY 1 cut(s) 967
MhlI GDGCHC 2 cut(s) 594, 960
MluCI AATT 5 cut(s) 189, 519, 555, 885, 1022
MlyI GAGTC 2 cut(s) 698, 878
Mph1103I ATGCAT 1 cut(s) 669
MroXI GAANNNNTTC 1 cut(s) 87
MseI TTAA 4 cut(s) 171, 285, 1053, 1115
MspA1I CMGCKG 1 cut(s) 167
MspI CCGG 3 cut(s) 943, 1015, 1085
MspR9I CCNGG 6 cut(s) 108, 210, 535, 944, 1016, 1085
MvaI CCWGG 3 cut(s) 108, 210, 535
MvnI CGCG 1 cut(s) 709
MwoI GCNNNNNNNGC 1 cut(s) 1055
NciI CCSGG 3 cut(s) 944, 1016, 1085
NdeII GATC 5 cut(s) 145, 343, 745, 880, 967
NlaIII CATG 4 cut(s) 284, 350, 428, 445
NlaIV GGNNCC 2 cut(s) 105, 754
NmuCI GTSAC 2 cut(s) 288, 1124
NsbI TGCGCA 1 cut(s) 1059
NsiI ATGCAT 1 cut(s) 669
NspI RCATGY 1 cut(s) 445
PdmI GAANNNNTTC 1 cut(s) 87
PfeI GAWTC 4 cut(s) 130, 160, 227, 353
PfoI TCCNGGA 1 cut(s) 106
PkrI GCNGC 3 cut(s) 463, 610, 1041
PleI GAGTC 2 cut(s) 698, 877
PpsI GAGTC 2 cut(s) 698, 877
Psp124BI GAGCTC 1 cut(s) 594
Psp6I CCWGG 3 cut(s) 106, 208, 533
PspGI CCWGG 3 cut(s) 106, 208, 533
PspN4I GGNNCC 2 cut(s) 105, 754
PspPI GGNCC 1 cut(s) 753
PsuI RGATCY 1 cut(s) 967
RsaI GTAC 2 cut(s) 5, 1007
RsaNI GTAC 2 cut(s) 4, 1006
SacI GAGCTC 1 cut(s) 594
SalI GTCGAC 1 cut(s) 973
SaqAI TTAA 4 cut(s) 171, 285, 1053, 1115
SatI GCNGC 3 cut(s) 462, 609, 1040
Sau3AI GATC 5 cut(s) 145, 343, 745, 880, 967
Sau96I GGNCC 1 cut(s) 753
SchI GAGTC 2 cut(s) 698, 878
ScrFI CCNGG 6 cut(s) 108, 210, 535, 944, 1016, 1085
SduI GDGCHC 2 cut(s) 594, 960
SfaNI GCATC 2 cut(s) 654, 723
SfcI CTRYAG 1 cut(s) 309
Sse9I AATT 5 cut(s) 189, 519, 555, 885, 1022
SsiI CCGC 4 cut(s) 165, 709, 1039, 1166
SstI GAGCTC 1 cut(s) 594
StyD4I CCNGG 6 cut(s) 106, 208, 533, 942, 1014, 1083
StyI CCWWGG 1 cut(s) 31
TaaI ACNGT 2 cut(s) 337, 772
TaiI ACGT 1 cut(s) 586
TaqI TCGA 2 cut(s) 883, 974
TasI AATT 5 cut(s) 189, 519, 555, 885, 1022
TatI WGTACW 2 cut(s) 3, 1005
TauI GCSGC 1 cut(s) 1042
TfiI GAWTC 4 cut(s) 130, 160, 227, 353
Tru1I TTAA 4 cut(s) 171, 285, 1053, 1115
Tru9I TTAA 4 cut(s) 171, 285, 1053, 1115
TseFI GTSAC 2 cut(s) 288, 1124
TseI GCWGC 2 cut(s) 461, 608
Tsp45I GTSAC 2 cut(s) 288, 1124
TspDTI ATGAA 2 cut(s) 618, 1161
XceI RCATGY 1 cut(s) 445
XmiI GTMKAC 1 cut(s) 974
XmnI GAANNNNTTC 1 cut(s) 87
Zsp2I ATGCAT 1 cut(s) 669
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.