Rh1DG416600

Transcription initiation factor TFIID subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0018191
Physical Location & Seq
Reverse (-)
63260020 .. 63260914
895 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG416600.1

Sequence Viewer

Length: 384 bp
ATGTCGATGATAAGATCGTCAAGGCCCAGATTTGGGACACCACTGACCAAGAAAGAGTCCCTCAAAGATCGAATTGAAATCTCGTATCTTTTTCTAAAACCAGTATCCAAAAAGGAAGCTCCTGATTACCGGGACATCATAGAGCACCCAATGGATCTGTCGACAATCAAGGTGAAGGTTCGGAATATGGAGTACAAGAGCCGGGAGCAATTCAGACAAGGTGTGTGGCAAATTGCCTTTAATGCGCATAAATATAATGATGGGCGTAACCCGGATATCCCTCCACTTGCAGATGAGCTTTTAAACTTTTGTGACTATATGTTGGTTGAGAATGAAGAAAGCTTGACTGAAGCGGAAGCAGGCATTGAATATAGAGATATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000428 GO:0000988 GO:0000989 GO:0001076 GO:0001129 GO:0001132 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004402 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0006139 GO:0006325 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008080 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016591 GO:0016740 GO:0016746 GO:0016747 GO:0017025 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0022607 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034212 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043565 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051123 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0055029 GO:0060255 GO:0061695 GO:0061733 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070897 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 map03022
Pfam Domains
Protein Families
Bromodomain DUF3591 TBP-binding ubiquitin zf-CCHC_6

Protein Analysis

127

Amino Acids

14.98

Weight (kDa)

5.75

Isoelectric Point (pI)

42.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bromodomain PF00439 26 - 95 5.1e-18 Bromodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 246
AccI GTMKAC 1 cut(s) 161
AciI CCGC 1 cut(s) 353
AclWI GGATC 1 cut(s) 162
AcuI CTGAAG 1 cut(s) 369
AfaI GTAC 1 cut(s) 194
AfiI CCNNNNNNNGG 2 cut(s) 32, 33
AgsI TTSAA 2 cut(s) 77, 368
AluBI AGCT 3 cut(s) 119, 298, 342
AluI AGCT 3 cut(s) 119, 298, 342
Alw21I GWGCWC 1 cut(s) 147
AlwI GGATC 1 cut(s) 162
AoxI GGCC 1 cut(s) 23
AspLEI GCGC 1 cut(s) 247
AspS9I GGNCC 1 cut(s) 24
AsuC2I CCSGG 3 cut(s) 131, 203, 272
AsuHPI GGTGA 1 cut(s) 184
Bbv12I GWGCWC 1 cut(s) 147
BccI CCATC 1 cut(s) 254
BciVI GTATCC 1 cut(s) 115
BcnI CCSGG 3 cut(s) 131, 203, 272
BfuI GTATCC 1 cut(s) 115
Bme1390I CCNGG 3 cut(s) 131, 203, 272
BmgT120I GGNCC 1 cut(s) 24
BmrFI CCNGG 3 cut(s) 131, 203, 272
BpuMI CCSGG 3 cut(s) 131, 203, 272
Bsc4I CCNNNNNNNGG 2 cut(s) 32, 33
Bse1I ACTGG 1 cut(s) 101
BseLI CCNNNNNNNGG 2 cut(s) 32, 33
BseNI ACTGG 1 cut(s) 101
BshFI GGCC 1 cut(s) 25
BsiHKAI GWGCWC 1 cut(s) 147
BsiSI CCGG 3 cut(s) 130, 202, 272
BslFI GGGAC 3 cut(s) 43, 49, 146
BslI CCNNNNNNNGG 2 cut(s) 32, 33
BsmFI GGGAC 3 cut(s) 43, 49, 146
BsnI GGCC 1 cut(s) 25
Bsp1286I GDGCHC 1 cut(s) 147
Bsp143I GATC 3 cut(s) 14, 67, 154
BspACI CCGC 1 cut(s) 353
BspANI GGCC 1 cut(s) 25
BspPI GGATC 1 cut(s) 162
BsrI ACTGG 1 cut(s) 101
BssMI GATC 3 cut(s) 14, 67, 154
BstC8I GCNNGC 1 cut(s) 361
BstHHI GCGC 1 cut(s) 247
BstKTI GATC 3 cut(s) 17, 70, 157
BstMBI GATC 3 cut(s) 14, 67, 154
BstMWI GCNNNNNNNGC 1 cut(s) 242
BstSCI CCNGG 3 cut(s) 129, 201, 270
BstX2I RGATCY 1 cut(s) 154
BstYI RGATCY 1 cut(s) 154
BsuI GTATCC 1 cut(s) 115
BsuRI GGCC 1 cut(s) 25
BtsIMutI CAGTG 1 cut(s) 41
Cac8I GCNNGC 1 cut(s) 361
CfoI GCGC 1 cut(s) 247
Cfr13I GGNCC 1 cut(s) 24
Csp6I GTAC 1 cut(s) 193
CspCI CAANNNNNGTGG 2 cut(s) 206, 241
CviJI RGCY 5 cut(s) 25, 119, 201, 298, 342
CviKI_1 RGCY 5 cut(s) 25, 119, 201, 298, 342
CviQI GTAC 1 cut(s) 193
DpnI GATC 3 cut(s) 16, 69, 156
DpnII GATC 3 cut(s) 14, 67, 154
DraI TTTAAA 1 cut(s) 303
Eco32I GATATC 1 cut(s) 277
Eco57I CTGAAG 1 cut(s) 369
EcoRV GATATC 1 cut(s) 277
FaiI YATR 8 cut(s) 140, 188, 249, 255, 318, 320, 372, 380
FaqI GGGAC 3 cut(s) 43, 49, 146
FblI GTMKAC 1 cut(s) 161
FspAI RTGCGCAY 1 cut(s) 246
FspI TGCGCA 1 cut(s) 246
GlaI GCGC 1 cut(s) 246
HaeIII GGCC 1 cut(s) 25
HapII CCGG 3 cut(s) 130, 202, 272
HhaI GCGC 1 cut(s) 247
Hin6I GCGC 1 cut(s) 245
HinP1I GCGC 1 cut(s) 245
HincII GTYRAC 1 cut(s) 162
HindII GTYRAC 1 cut(s) 162
HindIII AAGCTT 1 cut(s) 340
HinfI GANTC 1 cut(s) 56
HpaII CCGG 3 cut(s) 130, 202, 272
HphI GGTGA 1 cut(s) 184
Hpy166II GTNNAC 1 cut(s) 162
Hpy188I TCNGA 2 cut(s) 183, 215
Hpy188III TCNNGA 1 cut(s) 122
Hpy8I GTNNAC 1 cut(s) 162
HpyAV CCTTC 1 cut(s) 169
HpyCH4V TGCA 1 cut(s) 290
HpyF10VI GCNNNNNNNGC 1 cut(s) 242
HspAI GCGC 1 cut(s) 245
Kzo9I GATC 3 cut(s) 14, 67, 154
LmnI GCTCC 2 cut(s) 124, 205
LpnPI CCDG 7 cut(s) 40, 114, 135, 143, 215, 285, 345
MaeIII GTNAC 2 cut(s) 266, 311
MalI GATC 3 cut(s) 16, 69, 156
MboI GATC 3 cut(s) 14, 67, 154
MboII GAAGA 1 cut(s) 347
MflI RGATCY 1 cut(s) 154
MhlI GDGCHC 1 cut(s) 147
MluCI AATT 3 cut(s) 72, 209, 231
MlyI GAGTC 1 cut(s) 65
MnlI CCTC 2 cut(s) 71, 291
MseI TTAA 2 cut(s) 240, 302
MspI CCGG 3 cut(s) 130, 202, 272
MspR9I CCNGG 3 cut(s) 131, 203, 272
MwoI GCNNNNNNNGC 1 cut(s) 242
NciI CCSGG 3 cut(s) 131, 203, 272
NdeII GATC 3 cut(s) 14, 67, 154
NmuCI GTSAC 1 cut(s) 311
NsbI TGCGCA 1 cut(s) 246
PleI GAGTC 1 cut(s) 64
PpsI GAGTC 1 cut(s) 64
PspPI GGNCC 1 cut(s) 24
PsuI RGATCY 1 cut(s) 154
RsaI GTAC 1 cut(s) 194
RsaNI GTAC 1 cut(s) 193
SalI GTCGAC 1 cut(s) 160
SaqAI TTAA 2 cut(s) 240, 302
Sau3AI GATC 3 cut(s) 14, 67, 154
Sau96I GGNCC 1 cut(s) 24
SchI GAGTC 1 cut(s) 65
ScrFI CCNGG 3 cut(s) 131, 203, 272
SduI GDGCHC 1 cut(s) 147
SetI ASST 6 cut(s) 121, 174, 180, 223, 300, 344
Sse9I AATT 3 cut(s) 72, 209, 231
SsiI CCGC 1 cut(s) 353
StyD4I CCNGG 3 cut(s) 129, 201, 270
TaqI TCGA 3 cut(s) 5, 70, 161
TasI AATT 3 cut(s) 72, 209, 231
TatI WGTACW 1 cut(s) 192
Tru1I TTAA 2 cut(s) 240, 302
Tru9I TTAA 2 cut(s) 240, 302
TscAI CASTG 1 cut(s) 48
TseFI GTSAC 1 cut(s) 311
Tsp45I GTSAC 1 cut(s) 311
TspDTI ATGAA 1 cut(s) 348
TspRI CASTG 1 cut(s) 48
XmiI GTMKAC 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.