RchiOBHm_Chr5g0015101

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0013297
Physical Location & Seq
Reverse (-)
10457434 .. 10458842
1409 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 924 bp
ATGATGAGTCGAATTCGAGCATTTTCGTCTCCTTCAGTATTACCACCATCTTCTTCCACAAGTCAGATAGAAGTCCGGCCAGAAGATCATAGTTTTGAAGGCATTGCTACCAATGTTAAGTTACTATTGAAGCTAATCCAAGATCAGAATGAGGCAAAAGACAATGATGCCAGAAAGACACAAAGAGTGGCTGGAATGATATCAATAATTGATGATGTGAAATCCCGGATTCAAAAATCTCAAAATGGGGGGAGAAAAGCCGAGCTGAGGCGCTGTAATACAGATCTTAAGCCACATGCTCCTCCAAAGGACAAAAGGCCTCACGAGCCAATAACTGATGAGAAGGAGAAATTGAGAAGATCACTAAGTGCAAGCTTGGCAGCAAGAAAGAGCCTAGAAATTATGTGTTCAAGTTTGGGAAAGGAGAAGGAGATTATCGCAACTGAGCTTGCAAGGAAGGTTCAAGAATTTCATGGGATGGAGGAACATATCAATGATCTTAGAGTGCAAAATGAGAAGTTGTTGGCAAAAGTAAAAGCTTGTGCAGCAGAGCACAAAGAGAATAAGTGTGGCGGTGAGGAAGAGAGTGATACCTATGGGAATGCAGCGCTCCAGGAGCGGAACAAGGAACTTTCGGAGCAACTCCTTAAGTCCCTTGATGGGTGTAGATCCCTAAAGAGGAAGATTAGAGCTGCACATAAGGAAAATGATGCAATGCACCTGGCAATGGAGGAGATTGGAATGGATATTCAAGATGGACTTGACCGAATATGCTGCCTCAAGGAAGGGATTGTGGCAGGGAATGCAGATATTGAAGAGGAGCTTTTGGCATTGGAGCATCTGTTTGAGTCCTGCTACATGAAGGTCTCGGAACATGAGCAGAAGAAAATTGAGAAAAACAAGGCCGAGGTGAATGCTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

307

Amino Acids

34.53

Weight (kDa)

6.58

Isoelectric Point (pI)

57.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013297)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03620 AT4G03620
fragaria_vesca FvH4_3g09520 FvH4_3g09520
malus_domestica MD05G1060100.v1.1 MD10G1256000.v1.1
prunus_persica Prupe.4G087600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0015101
rosa_laevigata RLG00000032170
rosa_multiflora Rmu_sc0002209.1_g000004
rosa_roxburghii Rroxscaffold_1G00061430
rosa_rugosa Rorug05G0024300 Rorug05G0024300
rosa_samantha Rh5AG118700 Rh5BG116600 Rh5CG127700 Rh5DG115600
rosa_wichuraiana Rw5G010270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 619
AciI CCGC 2 cut(s) 573, 619
AclWI GGATC 1 cut(s) 663
AcoI YGGCCR 1 cut(s) 77
AcsI RAATTY 2 cut(s) 12, 467
AcuI CTGAAG 1 cut(s) 18
AdeI CACNNNGTG 1 cut(s) 368
AfeI AGCGCT 1 cut(s) 609
AfiI CCNNNNNNNGG 4 cut(s) 267, 660, 678, 727
AflII CTTAAG 2 cut(s) 287, 647
AgsI TTSAA 7 cut(s) 98, 130, 233, 411, 464, 752, 815
AjnI CCWGG 2 cut(s) 612, 720
AluBI AGCT 7 cut(s) 133, 265, 375, 448, 539, 692, 823
AluI AGCT 7 cut(s) 133, 265, 375, 448, 539, 692, 823
Alw21I GWGCWC 1 cut(s) 555
Alw26I GTCTC 2 cut(s) 33, 871
AlwI GGATC 1 cut(s) 663
Aor51HI AGCGCT 1 cut(s) 609
AoxI GGCC 3 cut(s) 77, 317, 903
ApeKI GCWGC 5 cut(s) 380, 545, 605, 692, 774
ApoI RAATTY 2 cut(s) 12, 467
AspLEI GCGC 2 cut(s) 273, 610
AsuC2I CCSGG 1 cut(s) 226
AsuHPI GGTGA 2 cut(s) 587, 922
BauI CACGAG 1 cut(s) 323
Bbv12I GWGCWC 1 cut(s) 555
BbvCI CCTCAGC 1 cut(s) 266
BbvI GCAGC 5 cut(s) 392, 557, 617, 679, 761
BccI CCATC 4 cut(s) 55, 472, 653, 749
BcgI CGANNNNNNTGC 3 cut(s) 756, 790, 896
BciT130I CCWGG 2 cut(s) 614, 722
BcnI CCSGG 1 cut(s) 226
BcoDI GTCTC 2 cut(s) 33, 871
BfaI CTAG 1 cut(s) 395
BfoI RGCGCY 2 cut(s) 274, 611
BfrI CTTAAG 2 cut(s) 287, 647
BglII AGATCT 1 cut(s) 283
BisI GCNGC 5 cut(s) 381, 546, 606, 693, 775
BlsI GCNGC 5 cut(s) 382, 547, 607, 694, 776
Bme1390I CCNGG 3 cut(s) 226, 614, 722
BmrFI CCNGG 3 cut(s) 226, 614, 722
BmsI GCATC 3 cut(s) 157, 700, 847
BpmI CTGGAG 1 cut(s) 596
Bpu10I CCTNAGC 1 cut(s) 266
BpuEI CTTGAG 1 cut(s) 764
BpuMI CCSGG 1 cut(s) 226
BsaI GGTCTC 1 cut(s) 871
BsaJI CCNNGG 1 cut(s) 906
BsaXI ACNNNNNCTCC 2 cut(s) 827, 857
Bsc4I CCNNNNNNNGG 4 cut(s) 267, 660, 678, 727
Bse3DI GCAATG 3 cut(s) 102, 720, 732
BseBI CCWGG 2 cut(s) 614, 722
BseDI CCNNGG 1 cut(s) 906
BseGI GGATG 1 cut(s) 483
BseLI CCNNNNNNNGG 4 cut(s) 267, 660, 678, 727
BseMI GCAATG 3 cut(s) 102, 720, 732
BseMII CTCAG 2 cut(s) 257, 435
BseRI GAGGAG 3 cut(s) 291, 746, 833
BseXI GCAGC 5 cut(s) 392, 557, 617, 679, 761
BsgI GTGCAG 2 cut(s) 564, 678
BshFI GGCC 3 cut(s) 79, 319, 905
BsiHKAI GWGCWC 1 cut(s) 555
BsiSI CCGG 2 cut(s) 76, 226
BslFI GGGAC 1 cut(s) 637
BslI CCNNNNNNNGG 4 cut(s) 267, 660, 678, 727
BsmAI GTCTC 2 cut(s) 33, 871
BsmBI CGTCTC 1 cut(s) 33
BsmFI GGGAC 1 cut(s) 637
BsmI GAATGC 3 cut(s) 607, 808, 919
BsnI GGCC 3 cut(s) 79, 319, 905
Bso31I GGTCTC 1 cut(s) 871
Bsp1286I GDGCHC 1 cut(s) 555
Bsp143I GATC 6 cut(s) 85, 142, 283, 359, 496, 668
BspACI CCGC 2 cut(s) 573, 619
BspANI GGCC 3 cut(s) 79, 319, 905
BspCNI CTCAG 2 cut(s) 258, 436
BspPI GGATC 1 cut(s) 663
BspTI CTTAAG 2 cut(s) 287, 647
BspTNI GGTCTC 1 cut(s) 871
BsrBI CCGCTC 1 cut(s) 619
BsrDI GCAATG 3 cut(s) 102, 720, 732
BssECI CCNNGG 1 cut(s) 906
BssMI GATC 6 cut(s) 85, 142, 283, 359, 496, 668
BssSI CACGAG 1 cut(s) 323
Bst2BI CACGAG 1 cut(s) 323
Bst2UI CCWGG 2 cut(s) 614, 722
Bst6I CTCTTC 2 cut(s) 576, 810
BstAFI CTTAAG 2 cut(s) 287, 647
BstAPI GCANNNNNTGC 1 cut(s) 803
BstC8I GCNNGC 2 cut(s) 373, 450
BstDEI CTNAG 4 cut(s) 266, 365, 444, 500
BstF5I GGATG 1 cut(s) 483
BstH2I RGCGCY 2 cut(s) 274, 611
BstHHI GCGC 2 cut(s) 273, 610
BstKTI GATC 6 cut(s) 88, 145, 286, 362, 499, 671
BstMAI GTCTC 2 cut(s) 33, 871
BstMBI GATC 6 cut(s) 85, 142, 283, 359, 496, 668
BstMWI GCNNNNNNNGC 5 cut(s) 325, 377, 545, 616, 803
BstNI CCWGG 2 cut(s) 614, 722
BstNSI RCATGY 1 cut(s) 299
BstSCI CCNGG 3 cut(s) 224, 612, 720
BstV1I GCAGC 5 cut(s) 392, 557, 617, 679, 761
BstX2I RGATCY 2 cut(s) 283, 668
BstYI RGATCY 2 cut(s) 283, 668
BsuRI GGCC 3 cut(s) 79, 319, 905
BtsCI GGATG 1 cut(s) 483
Cac8I GCNNGC 2 cut(s) 373, 450
CfoI GCGC 2 cut(s) 273, 610
CviAII CATG 4 cut(s) 296, 473, 859, 875
DdeI CTNAG 4 cut(s) 266, 365, 444, 500
DpnI GATC 6 cut(s) 87, 144, 285, 361, 498, 670
DpnII GATC 6 cut(s) 85, 142, 283, 359, 496, 668
DraIII CACNNNGTG 1 cut(s) 368
EaeI YGGCCR 1 cut(s) 77
Eam1104I CTCTTC 2 cut(s) 576, 810
EarI CTCTTC 2 cut(s) 576, 810
Eco147I AGGCCT 1 cut(s) 319
Eco31I GGTCTC 1 cut(s) 871
Eco32I GATATC 1 cut(s) 201
Eco47III AGCGCT 1 cut(s) 609
Eco57I CTGAAG 1 cut(s) 18
EcoRI GAATTC 1 cut(s) 12
EcoRII CCWGG 2 cut(s) 612, 720
EcoRV GATATC 1 cut(s) 201
Esp3I CGTCTC 1 cut(s) 33
FaeI CATG 4 cut(s) 299, 476, 862, 878
FalI AAGNNNNNCTT 4 cut(s) 744, 776, 807, 839
FaqI GGGAC 1 cut(s) 637
FatI CATG 4 cut(s) 295, 472, 858, 874
Fnu4HI GCNGC 5 cut(s) 381, 546, 606, 693, 775
FokI GGATG 1 cut(s) 490
Fsp4HI GCNGC 5 cut(s) 381, 546, 606, 693, 775
FspBI CTAG 1 cut(s) 395
GlaI GCGC 2 cut(s) 272, 609
GluI GCNGC 5 cut(s) 381, 546, 606, 693, 775
GsuI CTGGAG 1 cut(s) 596
HaeII RGCGCY 2 cut(s) 274, 611
HaeIII GGCC 3 cut(s) 79, 319, 905
HapII CCGG 2 cut(s) 76, 226
HhaI GCGC 2 cut(s) 273, 610
Hin1II CATG 4 cut(s) 299, 476, 862, 878
Hin6I GCGC 2 cut(s) 271, 608
HinP1I GCGC 2 cut(s) 271, 608
HindIII AAGCTT 2 cut(s) 373, 537
HinfI GANTC 3 cut(s) 7, 229, 848
HpaII CCGG 2 cut(s) 76, 226
HphI GGTGA 2 cut(s) 587, 922
Hpy188I TCNGA 4 cut(s) 66, 147, 637, 871
Hpy188III TCNNGA 3 cut(s) 323, 464, 752
HpyAV CCTTC 7 cut(s) 42, 92, 337, 421, 451, 779, 856
HpyCH4V TGCA 9 cut(s) 371, 452, 508, 545, 605, 695, 713, 718, 806
HpyF10VI GCNNNNNNNGC 5 cut(s) 325, 377, 545, 616, 803
HpyF3I CTNAG 4 cut(s) 266, 365, 444, 500
Hsp92II CATG 4 cut(s) 299, 476, 862, 878
HspAI GCGC 2 cut(s) 271, 608
Kzo9I GATC 6 cut(s) 85, 142, 283, 359, 496, 668
LmnI GCTCC 6 cut(s) 304, 615, 616, 637, 820, 835
Lsp1109I GCAGC 5 cut(s) 392, 557, 617, 679, 761
LweI GCATC 3 cut(s) 157, 700, 847
MaeI CTAG 1 cut(s) 395
MaeIII GTNAC 1 cut(s) 120
MalI GATC 6 cut(s) 87, 144, 285, 361, 498, 670
MbiI CCGCTC 1 cut(s) 619
MboI GATC 6 cut(s) 85, 142, 283, 359, 496, 668
MboII GAAGA 8 cut(s) 42, 45, 95, 369, 593, 694, 827, 895
MflI RGATCY 2 cut(s) 283, 668
MhlI GDGCHC 1 cut(s) 555
MluCI AATT 6 cut(s) 12, 207, 350, 399, 467, 888
MlyI GAGTC 2 cut(s) 16, 857
MseI TTAA 4 cut(s) 117, 288, 648, 922
MslI CAYNNNNRTG 1 cut(s) 492
MspCI CTTAAG 2 cut(s) 287, 647
MspI CCGG 2 cut(s) 76, 226
MspR9I CCNGG 3 cut(s) 226, 614, 722
Mva1269I GAATGC 3 cut(s) 607, 808, 919
MvaI CCWGG 2 cut(s) 614, 722
MwoI GCNNNNNNNGC 5 cut(s) 325, 377, 545, 616, 803
NciI CCSGG 1 cut(s) 226
NdeII GATC 6 cut(s) 85, 142, 283, 359, 496, 668
NlaIII CATG 4 cut(s) 299, 476, 862, 878
NmeAIII GCCGAG 1 cut(s) 286
NspI RCATGY 1 cut(s) 299
PceI AGGCCT 1 cut(s) 319
PctI GAATGC 3 cut(s) 607, 808, 919
PfeI GAWTC 1 cut(s) 229
PfoI TCCNGGA 2 cut(s) 224, 612
PkrI GCNGC 5 cut(s) 382, 547, 607, 694, 776
PleI GAGTC 2 cut(s) 15, 856
PpsI GAGTC 2 cut(s) 15, 856
Psp6I CCWGG 2 cut(s) 612, 720
PspGI CCWGG 2 cut(s) 612, 720
PsuI RGATCY 2 cut(s) 283, 668
RseI CAYNNNNRTG 1 cut(s) 492
SaqAI TTAA 4 cut(s) 117, 288, 648, 922
SatI GCNGC 5 cut(s) 381, 546, 606, 693, 775
Sau3AI GATC 6 cut(s) 85, 142, 283, 359, 496, 668
SchI GAGTC 2 cut(s) 16, 857
ScrFI CCNGG 3 cut(s) 226, 614, 722
SduI GDGCHC 1 cut(s) 555
SfaNI GCATC 3 cut(s) 157, 700, 847
SmiMI CAYNNNNRTG 1 cut(s) 492
SmlI CTYRAG 3 cut(s) 287, 647, 779
SmoI CTYRAG 3 cut(s) 287, 647, 779
Sse9I AATT 6 cut(s) 12, 207, 350, 399, 467, 888
SseBI AGGCCT 1 cut(s) 319
SsiI CCGC 2 cut(s) 573, 619
SspMI CTAG 1 cut(s) 395
StuI AGGCCT 1 cut(s) 319
StyD4I CCNGG 3 cut(s) 224, 612, 720
TaqI TCGA 2 cut(s) 10, 16
TaqII GACCGA 1 cut(s) 780
TasI AATT 6 cut(s) 12, 207, 350, 399, 467, 888
TfiI GAWTC 1 cut(s) 229
Tru1I TTAA 4 cut(s) 117, 288, 648, 922
Tru9I TTAA 4 cut(s) 117, 288, 648, 922
TseI GCWGC 5 cut(s) 380, 545, 605, 692, 774
TspDTI ATGAA 2 cut(s) 461, 875
Vha464I CTTAAG 2 cut(s) 287, 647
XapI RAATTY 2 cut(s) 12, 467
XceI RCATGY 1 cut(s) 299
XspI CTAG 1 cut(s) 395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.