Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0019186

Physical Location & Seq

Genomic Coordinates Reverse (-)

11960654 .. 11962121

Gene Structure 1468 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGACCCGAATTCAACCGATTCACCATATGTGCAGATTCAATTGCACCCAATTCAGTAAGAGAAGAAACTCACGCAAGAGGAATGCCATGCCTTCAGAATGTGATCATTTTGACTACATCAAACCCTCTCTCCTCCTCCTTTCAGAAACCGATCATCTTGGACTGGACAAACTCATCTCTCTGCTATCCATCGAACAGATTACAGATCTGGAATCATGTGCTTCCTTCTCGAAGATAAACTTGTCGTCTGGTGTGAATGTCAGAAATAGAATAGGAGAGCAGGTCACCCGTCGGGCAGCTCTTTTGTGTGGATCATTATTATCACTAGCTCTTCTAGTCATTACATTTCGAAAATTCATAAGGATTTTTAGTAAAAGCAATAATTTATTAACGGAGTCGTTTTCCTTTGGTGAGATTCAATACGTGAATGAAAGAAACAATGTGTTACAAAACACTTCTTTGATTTCTTCTCAGAATTATTACAGATATCAATTAATTCAACAATTGGATCGATGGAGTTATCGTATTATTAGTTTAGGGTTTATCCTTTTAACCATAGGCATTCTTTCGGGAGCAGTATGGGCTAATGAAGCATGGGGATCCTATTGGAATTGGGATCCAAAAGAGACTTGGGCATTTATTACTTGGACCATATTTGCGATTTATTTACATATTCGAACAAATAAAAATTATGAAAGCGTAAATTCTGCAATTGTGGCCTCAATGGGCTTTCTTATAATTTGGATATGCTATTTTGGGGTTAATCTATTAGGAATAGGGTTACATAGTTATGGTTCATTTACATTACCATCTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0008150 GO:0008152 GO:0009536 GO:0015886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051181 GO:0051234 GO:0055114 GO:0071702 GO:0071705 GO:1901678

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cytochrom_C_asm

Protein Analysis

272

Amino Acids

31.33

Weight (kDa)

9.26

Isoelectric Point (pI)

36.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cytochrom_C_asm	PF01578	99 - 262	4.3e-44	Cytochrome C assembly protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0019186)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG01040
prunus_persica	Prupe.5G061000_v2.0.a1
pyrus_communis	pycom09g13060
rosa_chinensis	RchiOBHm_Chr5g0017241 RchiOBHm_CPg0502821
rosa_multiflora	Rmu_sc0001218.1_g000006
rosa_samantha	Rh2DG279600 Rh7DG273400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	737
Acc36I	ACCTGC	1 cut(s)	271
AclWI	GGATC	6 cut(s)	319, 516, 594, 607, 611, 624
AcsI	RAATTY	3 cut(s)	9, 353, 703
AcuI	CTGAAG	1 cut(s)	78
AgsI	TTSAA	4 cut(s)	14, 40, 419, 500
AluBI	AGCT	2 cut(s)	299, 329
AluI	AGCT	2 cut(s)	299, 329
Alw26I	GTCTC	1 cut(s)	620
AlwI	GGATC	6 cut(s)	319, 516, 594, 607, 611, 624
AoxI	GGCC	1 cut(s)	717
ApeKI	GCWGC	1 cut(s)	296
ApoI	RAATTY	3 cut(s)	9, 353, 703
AseI	ATTAAT	1 cut(s)	494
AspS9I	GGNCC	1 cut(s)	648
AsuHPI	GGTGA	3 cut(s)	14, 277, 422
AsuII	TTCGAA	2 cut(s)	349, 676
AvaII	GGWCC	1 cut(s)	648
BamHI	GGATCC	2 cut(s)	599, 616
BbvI	GCAGC	1 cut(s)	308
BccI	CCATC	3 cut(s)	197, 507, 817
BclI	TGATCA	1 cut(s)	103
BcoDI	GTCTC	1 cut(s)	620
BfaI	CTAG	2 cut(s)	326, 335
BfuAI	ACCTGC	1 cut(s)	271
BglII	AGATCT	1 cut(s)	205
BisI	GCNGC	1 cut(s)	297
BlsI	GCNGC	1 cut(s)	298
Bme18I	GGWCC	1 cut(s)	648
BmgT120I	GGNCC	1 cut(s)	648
BmiI	GGNNCC	2 cut(s)	601, 618
Bpu14I	TTCGAA	2 cut(s)	349, 676
Bsa29I	ATCGAT	1 cut(s)	511
BsaAI	YACGTR	1 cut(s)	424
BsaXI	ACNNNNNCTCC	6 cut(s)	114, 144, 267, 297, 508, 538
Bse1I	ACTGG	1 cut(s)	168
BseCI	ATCGAT	1 cut(s)	511
BseMII	CTCAG	1 cut(s)	485
BseNI	ACTGG	1 cut(s)	168
BseRI	GAGGAG	2 cut(s)	122, 125
BseXI	GCAGC	1 cut(s)	308
BsgI	GTGCAG	1 cut(s)	52
BshFI	GGCC	1 cut(s)	719
BshVI	ATCGAT	1 cut(s)	511
BsmAI	GTCTC	1 cut(s)	620
BsmI	GAATGC	2 cut(s)	88, 561
BsnI	GGCC	1 cut(s)	719
Bsp119I	TTCGAA	2 cut(s)	349, 676
Bsp143I	GATC	7 cut(s)	103, 151, 205, 311, 508, 599, 616
BspANI	GGCC	1 cut(s)	719
BspCNI	CTCAG	1 cut(s)	484
BspDI	ATCGAT	1 cut(s)	511
BspLI	GGNNCC	2 cut(s)	601, 618
BspMI	ACCTGC	1 cut(s)	271
BspPI	GGATC	6 cut(s)	319, 516, 594, 607, 611, 624
BspQI	GCTCTTC	1 cut(s)	336
BspT104I	TTCGAA	2 cut(s)	349, 676
BsrI	ACTGG	1 cut(s)	168
BssMI	GATC	7 cut(s)	103, 151, 205, 311, 508, 599, 616
Bst6I	CTCTTC	1 cut(s)	336
BstBAI	YACGTR	1 cut(s)	424
BstBI	TTCGAA	2 cut(s)	349, 676
BstDEI	CTNAG	1 cut(s)	471
BstEII	GGTNACC	1 cut(s)	283
BstKTI	GATC	7 cut(s)	106, 154, 208, 314, 511, 602, 619
BstMAI	GTCTC	1 cut(s)	620
BstMBI	GATC	7 cut(s)	103, 151, 205, 311, 508, 599, 616
BstMWI	GCNNNNNNNGC	3 cut(s)	581, 590, 716
BstPI	GGTNACC	1 cut(s)	283
BstV1I	GCAGC	1 cut(s)	308
BstX2I	RGATCY	3 cut(s)	205, 599, 616
BstYI	RGATCY	3 cut(s)	205, 599, 616
Bsu15I	ATCGAT	1 cut(s)	511
BsuRI	GGCC	1 cut(s)	719
BsuTUI	ATCGAT	1 cut(s)	511
BveI	ACCTGC	1 cut(s)	271
Cfr13I	GGNCC	1 cut(s)	648
ClaI	ATCGAT	1 cut(s)	511
CviAII	CATG	3 cut(s)	88, 216, 594
CviJI	RGCY	5 cut(s)	299, 329, 584, 719, 729
CviKI_1	RGCY	5 cut(s)	299, 329, 584, 719, 729
DdeI	CTNAG	1 cut(s)	471
DpnI	GATC	7 cut(s)	105, 153, 207, 313, 510, 601, 618
DpnII	GATC	7 cut(s)	103, 151, 205, 311, 508, 599, 616
Eam1104I	CTCTTC	1 cut(s)	336
EarI	CTCTTC	1 cut(s)	336
Eco32I	GATATC	1 cut(s)	488
Eco47I	GGWCC	1 cut(s)	648
Eco57I	CTGAAG	1 cut(s)	78
Eco91I	GGTNACC	1 cut(s)	283
EcoO65I	GGTNACC	1 cut(s)	283
EcoRI	GAATTC	1 cut(s)	9
EcoRV	GATATC	1 cut(s)	488
FaeI	CATG	3 cut(s)	91, 219, 597
FalI	AAGNNNNNCTT	2 cut(s)	224, 256
FatI	CATG	3 cut(s)	87, 215, 593
FauNDI	CATATG	1 cut(s)	27
FbaI	TGATCA	1 cut(s)	103
Fnu4HI	GCNGC	1 cut(s)	297
Fsp4HI	GCNGC	1 cut(s)	297
FspBI	CTAG	2 cut(s)	326, 335
GluI	GCNGC	1 cut(s)	297
HaeIII	GGCC	1 cut(s)	719
Hin1II	CATG	3 cut(s)	91, 219, 597
HinfI	GANTC	5 cut(s)	19, 36, 212, 395, 415
HphI	GGTGA	3 cut(s)	14, 277, 422
Hpy188I	TCNGA	4 cut(s)	97, 145, 263, 474
Hpy188III	TCNNGA	3 cut(s)	209, 229, 570
Hpy99I	CGWCG	1 cut(s)	294
HpyAV	CCTTC	2 cut(s)	102, 235
HpyCH4IV	ACGT	1 cut(s)	423
HpyCH4V	TGCA	3 cut(s)	33, 45, 710
HpyF10VI	GCNNNNNNNGC	3 cut(s)	581, 590, 716
HpyF3I	CTNAG	1 cut(s)	471
HpySE526I	ACGT	1 cut(s)	423
Hsp92II	CATG	3 cut(s)	91, 219, 597
Ksp22I	TGATCA	1 cut(s)	103
Kzo9I	GATC	7 cut(s)	103, 151, 205, 311, 508, 599, 616
LguI	GCTCTTC	1 cut(s)	336
LmnI	GCTCC	1 cut(s)	572
LpnPI	CCDG	4 cut(s)	149, 194, 234, 266
Lsp1109I	GCAGC	1 cut(s)	308
MaeI	CTAG	2 cut(s)	326, 335
MaeII	ACGT	1 cut(s)	423
MaeIII	GTNAC	3 cut(s)	283, 444, 780
MalI	GATC	7 cut(s)	105, 153, 207, 313, 510, 601, 618
MboI	GATC	7 cut(s)	103, 151, 205, 311, 508, 599, 616
MboII	GAAGA	4 cut(s)	75, 244, 323, 459
MfeI	CAATTG	3 cut(s)	40, 503, 711
MflI	RGATCY	3 cut(s)	205, 599, 616
MlyI	GAGTC	1 cut(s)	404
MnlI	CCTC	5 cut(s)	72, 136, 143, 146, 730
MseI	TTAA	4 cut(s)	389, 494, 551, 762
MslI	CAYNNNNRTG	1 cut(s)	789
MunI	CAATTG	3 cut(s)	40, 503, 711
Mva1269I	GAATGC	2 cut(s)	88, 561
MwoI	GCNNNNNNNGC	3 cut(s)	581, 590, 716
NdeI	CATATG	1 cut(s)	27
NdeII	GATC	7 cut(s)	103, 151, 205, 311, 508, 599, 616
NlaIII	CATG	3 cut(s)	91, 219, 597
NlaIV	GGNNCC	2 cut(s)	601, 618
NmuCI	GTSAC	1 cut(s)	283
NspV	TTCGAA	2 cut(s)	349, 676
PciSI	GCTCTTC	1 cut(s)	336
PctI	GAATGC	2 cut(s)	88, 561
PfeI	GAWTC	4 cut(s)	19, 36, 212, 415
PkrI	GCNGC	1 cut(s)	298
PleI	GAGTC	1 cut(s)	403
PpsI	GAGTC	1 cut(s)	403
Ppu21I	YACGTR	1 cut(s)	424
PshBI	ATTAAT	1 cut(s)	494
PsiI	TTATAA	1 cut(s)	737
PspEI	GGTNACC	1 cut(s)	283
PspN4I	GGNNCC	2 cut(s)	601, 618
PspPI	GGNCC	1 cut(s)	648
PsuI	RGATCY	3 cut(s)	205, 599, 616
RseI	CAYNNNNRTG	1 cut(s)	789
SapI	GCTCTTC	1 cut(s)	336
SaqAI	TTAA	4 cut(s)	389, 494, 551, 762
SatI	GCNGC	1 cut(s)	297
Sau3AI	GATC	7 cut(s)	103, 151, 205, 311, 508, 599, 616
Sau96I	GGNCC	1 cut(s)	648
SchI	GAGTC	1 cut(s)	404
SetI	ASST	4 cut(s)	285, 301, 331, 426
SfuI	TTCGAA	2 cut(s)	349, 676
SinI	GGWCC	1 cut(s)	648
SmiMI	CAYNNNNRTG	1 cut(s)	789
SspMI	CTAG	2 cut(s)	326, 335
TaiI	ACGT	1 cut(s)	426
TaqI	TCGA	5 cut(s)	192, 230, 349, 511, 676
TfiI	GAWTC	4 cut(s)	19, 36, 212, 415
Tru1I	TTAA	4 cut(s)	389, 494, 551, 762
Tru9I	TTAA	4 cut(s)	389, 494, 551, 762
TseFI	GTSAC	1 cut(s)	283
TseI	GCWGC	1 cut(s)	296
Tsp45I	GTSAC	1 cut(s)	283
TspDTI	ATGAA	5 cut(s)	346, 444, 603, 708, 786
TspGWI	ACGGA	1 cut(s)	407
VpaK11BI	GGWCC	1 cut(s)	648
VspI	ATTAAT	1 cut(s)	494
XapI	RAATTY	3 cut(s)	9, 353, 703
XcmI	CCANNNNNNNNNTGG	1 cut(s)	627
XspI	CTAG	2 cut(s)	326, 335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.