RchiOBHm_Chr5g0018111

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0018767
Physical Location & Seq
Forward (+)
12630104 .. 12631510
1407 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1407 bp
ATGAGTACCGGCATTCCCTTAAGCTCTGTGGTTAATGCGCTTGGCTTGGCCACAACTACCCGAATTGATGATCTCCCCAACTTTATATTGGCGGAAATCCTTGCTCGACTTCCTCGCAAAAAAACAGTATTTCGAGCCAAGTGTGTGTCCAGGCGTTGGTTGAGTCTCCTCTCAGACCCTTATTTTGTTAGGACCTTTTTAAGTCTCCAAGGCGTTGATGAAGGAAATGCATTTATAGGTGCAGGTATTCTTGTTGTTTTGCCCTTCCCTAAGAATAAACTCAGACCCAAACTTGAAGTCCATGCGCATCCGGTAGTCAAAACAAAAGAAAGCCATTTCTCTCTGGATTTCCTCCCATGTTTTCAAGAAGAGAAAGAACGAGAGGTTCGACTATTGGTGGCAGGAACATATAATGACTTGGTTTTGTGCTGCAAAAGCTACAGAACCTACGAGGAGGATGGGGAGATTTACTCCATCCGTAATCCTTACTACATCTGTAATCCATATACGAAGCAGTGGGTTGCTCTTCCTCCGAACCATCTCAGAGTCCCCTTCGGCTGTGGAACACTTGTGGGATTCATCTGTGAACCATACTTTAGGTACTCTGCAGATGGCAAAGAAGAACAAACTAGTAGTATCACCCTTAATGCCGAGTATAGGTGGAGTGTTGTGCAAATGGTAATTTGTTTTCTATCATCAACGCTTGAATTACATATGGAGATCTTCTCTTCCGAGACTCGACAGTGGAAGCAATTGGTTGTACAATGCCCACCAAGCTTTATATGTTTGGGTGCTGGTTCGGAGGTCGTTGCTTACAATGGAATGTTGTATTGGTTGTTAGGTGCTAATAATAATATTGTTGATTTGGATCCAATGTTCAGTAGTGATGTTATTGATCAATGCCGTTTTGGTATCAACGGCACCATATATACATACATGTGTCTAGGTGTTTGCGGCGGACGTCTGCGGATGTGCCAGAGGGATTTTGTAGGTAAGCAGGATTTTGTAGGTAACCGTCACCTAAGTGTTTGGGAGTGGAAAGAAGAGGTGGATGACAATGGATGCAAGATGCAAAAATGGTGCTTGATAGTTGACCGTCTTTCCATCAACCAGCTGGTTTTAAAATATCCTTTGATCTCTGAAAATAAATTGCCGTATGGTAGGAAGTTTCAGGTGCTAGGTTTTCACCCATACAATGAGGATGCGGTGTTTTTGGAGACTGAGCACCCAAATTGCATTGCTCTGTGCAATATGCGCGAAAGAACCCTAGAGATGGTTTCAGAATTTGATCCTAAGATCAATTTGGAAAGCTGGTTTGGAAGTTGGTTTCGCTCTGCGTGTTTGGGAAGCAGAAACGTCTACCCATATGTGATCCCGTGGTTGCCTACACCTGTCCCTAAACTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

468

Amino Acids

53.68

Weight (kDa)

7.03

Isoelectric Point (pI)

36.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 22 - 63 6.8e-07 F-box domain
F-box-like PF12937 22 - 64 4.8e-06 F-box-like
b-prop_At3g26010-like PF24750 127 - 428 5.9e-11 F-box protein At3g26010-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018767)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47695
rosa_chinensis RchiOBHm_Chr5g0018111
rosa_laevigata RLG00000032321 RLG00000032322
rosa_multiflora Rmu_sc0010280.1_g000022 Rmu_sc0013814.1_g000004
rosa_roxburghii Rroxscaffold_1G00069250
rosa_samantha Rh5CG143900 Rh5DG133700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 964
Acc16I TGCGCA 1 cut(s) 306
Acc36I ACCTGC 1 cut(s) 233
AccB1I GGYRCC 1 cut(s) 920
AccB7I CCANNNNNTGG 1 cut(s) 156
AccI GTMKAC 1 cut(s) 1359
AccII CGCG 1 cut(s) 1257
AciI CCGC 5 cut(s) 92, 954, 957, 967, 1205
AclWI GGATC 4 cut(s) 863, 876, 1283, 1366
AcoI YGGCCR 1 cut(s) 48
AcsI RAATTY 1 cut(s) 1283
AcyI GRCGYC 1 cut(s) 961
AfaI GTAC 3 cut(s) 7, 602, 762
AfiI CCNNNNNNNGG 3 cut(s) 156, 657, 1273
AflII CTTAAG 1 cut(s) 19
AflIII ACRYGT 1 cut(s) 936
AgsI TTSAA 3 cut(s) 296, 365, 707
AhlI ACTAGT 1 cut(s) 629
AjnI CCWGG 1 cut(s) 149
AjuI GAANNNNNNNTTGG 4 cut(s) 814, 846, 1299, 1331
AleI CACNNNNGTG 1 cut(s) 1023
AloI GAACNNNNNNTCC 2 cut(s) 860, 892
AluBI AGCT 5 cut(s) 24, 438, 777, 1114, 1311
AluI AGCT 5 cut(s) 24, 438, 777, 1114, 1311
Alw21I GWGCWC 1 cut(s) 1227
Alw26I GTCTC 4 cut(s) 170, 209, 728, 1211
AlwI GGATC 4 cut(s) 863, 876, 1283, 1366
AoxI GGCC 1 cut(s) 48
ApeKI GCWGC 1 cut(s) 429
ApoI RAATTY 1 cut(s) 1283
ArsI GACNNNNNNTTYG 4 cut(s) 167, 199, 282, 314
AspLEI GCGC 3 cut(s) 40, 307, 1257
AspS9I GGNCC 1 cut(s) 192
AsuHPI GGTGA 3 cut(s) 631, 1010, 1178
AvaII GGWCC 1 cut(s) 192
BalI TGGCCA 1 cut(s) 50
BamHI GGATCC 1 cut(s) 868
BanI GGYRCC 1 cut(s) 920
Bbv12I GWGCWC 1 cut(s) 1227
BbvI GCAGC 1 cut(s) 416
BccI CCATC 6 cut(s) 452, 482, 546, 605, 1112, 1267
BceAI ACGGC 3 cut(s) 888, 934, 1138
BciT130I CCWGG 1 cut(s) 151
BclI TGATCA 1 cut(s) 895
BcoDI GTCTC 4 cut(s) 170, 209, 728, 1211
BcuI ACTAGT 1 cut(s) 629
BfaI CTAG 5 cut(s) 630, 944, 1178, 1268, 1405
BfmI CTRYAG 2 cut(s) 439, 606
BfrI CTTAAG 1 cut(s) 19
BfuAI ACCTGC 1 cut(s) 233
BglII AGATCT 1 cut(s) 720
BisI GCNGC 2 cut(s) 430, 955
BlsI GCNGC 2 cut(s) 431, 956
Bme1390I CCNGG 1 cut(s) 151
Bme18I GGWCC 1 cut(s) 192
BmgT120I GGNCC 1 cut(s) 192
BmiI GGNNCC 2 cut(s) 870, 922
BmrFI CCNGG 1 cut(s) 151
BmsI GCATC 4 cut(s) 316, 1052, 1059, 1192
BplI GAGNNNNNCTC 4 cut(s) 455, 487, 710, 742
BsaBI GATNNNNATC 1 cut(s) 867
BsaHI GRCGYC 1 cut(s) 961
BsaJI CCNNGG 2 cut(s) 208, 1376
BsaWI WCCGGW 1 cut(s) 310
Bsc4I CCNNNNNNNGG 3 cut(s) 156, 657, 1273
Bse118I RCCGGY 1 cut(s) 8
Bse3DI GCAATG 1 cut(s) 1236
Bse8I GATNNNNATC 1 cut(s) 867
BseBI CCWGG 1 cut(s) 151
BseDI CCNNGG 2 cut(s) 208, 1376
BseGI GGATG 7 cut(s) 307, 463, 474, 975, 1057, 1067, 1207
BseJI GATNNNNATC 1 cut(s) 867
BseLI CCNNNNNNNGG 3 cut(s) 156, 657, 1273
BseMI GCAATG 1 cut(s) 1236
BseMII CTCAG 4 cut(s) 186, 295, 556, 1212
BseRI GAGGAG 2 cut(s) 158, 467
BseXI GCAGC 1 cut(s) 416
BsgI GTGCAG 1 cut(s) 261
Bsh1236I CGCG 1 cut(s) 1257
BshFI GGCC 1 cut(s) 50
BshNI GGYRCC 1 cut(s) 920
BsiHKAI GWGCWC 1 cut(s) 1227
BsiSI CCGG 2 cut(s) 9, 311
BslFI GGGAC 2 cut(s) 533, 1379
BslI CCNNNNNNNGG 3 cut(s) 156, 657, 1273
BsmAI GTCTC 4 cut(s) 170, 209, 728, 1211
BsmFI GGGAC 2 cut(s) 533, 1379
BsmI GAATGC 1 cut(s) 12
BsnI GGCC 1 cut(s) 50
Bsp1286I GDGCHC 1 cut(s) 1227
Bsp1407I TGTACA 1 cut(s) 760
Bsp143I GATC 8 cut(s) 70, 720, 868, 895, 1134, 1288, 1296, 1371
BspACI CCGC 5 cut(s) 92, 954, 957, 967, 1205
BspANI GGCC 1 cut(s) 50
BspCNI CTCAG 4 cut(s) 185, 294, 555, 1213
BspFNI CGCG 1 cut(s) 1257
BspLI GGNNCC 2 cut(s) 870, 922
BspMAI CTGCAG 1 cut(s) 610
BspMI ACCTGC 1 cut(s) 233
BspPI GGATC 4 cut(s) 863, 876, 1283, 1366
BspQI GCTCTTC 1 cut(s) 531
BspT107I GGYRCC 1 cut(s) 920
BspTI CTTAAG 1 cut(s) 19
BsrDI GCAATG 1 cut(s) 1236
BsrFI RCCGGY 1 cut(s) 8
BsrGI TGTACA 1 cut(s) 760
BssAI RCCGGY 1 cut(s) 8
BssECI CCNNGG 2 cut(s) 208, 1376
BssMI GATC 8 cut(s) 70, 720, 868, 895, 1134, 1288, 1296, 1371
BssNI GRCGYC 1 cut(s) 961
BssT1I CCWWGG 1 cut(s) 208
Bst2UI CCWGG 1 cut(s) 151
Bst4CI ACNGT 4 cut(s) 127, 744, 1016, 1097
Bst6I CTCTTC 4 cut(s) 363, 531, 733, 1038
BstACI GRCGYC 1 cut(s) 961
BstAFI CTTAAG 1 cut(s) 19
BstAUI TGTACA 1 cut(s) 760
BstDEI CTNAG 7 cut(s) 172, 270, 281, 542, 1022, 1221, 1293
BstDSI CCRYGG 1 cut(s) 1376
BstEII GGTNACC 1 cut(s) 1010
BstF5I GGATG 7 cut(s) 307, 463, 474, 975, 1057, 1067, 1207
BstFNI CGCG 1 cut(s) 1257
BstHHI GCGC 3 cut(s) 40, 307, 1257
BstKTI GATC 8 cut(s) 73, 723, 871, 898, 1137, 1291, 1299, 1374
BstMAI GTCTC 4 cut(s) 170, 209, 728, 1211
BstMBI GATC 8 cut(s) 70, 720, 868, 895, 1134, 1288, 1296, 1371
BstMWI GCNNNNNNNGC 3 cut(s) 435, 774, 1254
BstNI CCWGG 1 cut(s) 151
BstNSI RCATGY 1 cut(s) 940
BstPI GGTNACC 1 cut(s) 1010
BstSCI CCNGG 1 cut(s) 149
BstSFI CTRYAG 2 cut(s) 439, 606
BstUI CGCG 1 cut(s) 1257
BstV1I GCAGC 1 cut(s) 416
BstX2I RGATCY 2 cut(s) 720, 868
BstYI RGATCY 2 cut(s) 720, 868
BsuRI GGCC 1 cut(s) 50
BtgI CCRYGG 1 cut(s) 1376
BtsCI GGATG 7 cut(s) 307, 463, 474, 975, 1057, 1067, 1207
BtsI GCAGTG 1 cut(s) 521
BtsIMutI CAGTG 2 cut(s) 521, 749
BveI ACCTGC 1 cut(s) 233
CfoI GCGC 3 cut(s) 40, 307, 1257
Cfr10I RCCGGY 1 cut(s) 8
Cfr13I GGNCC 1 cut(s) 192
Csp6I GTAC 3 cut(s) 6, 601, 761
CviAII CATG 3 cut(s) 302, 357, 937
CviQI GTAC 3 cut(s) 6, 601, 761
DdeI CTNAG 7 cut(s) 172, 270, 281, 542, 1022, 1221, 1293
DpnI GATC 8 cut(s) 72, 722, 870, 897, 1136, 1290, 1298, 1373
DpnII GATC 8 cut(s) 70, 720, 868, 895, 1134, 1288, 1296, 1371
DraI TTTAAA 1 cut(s) 1122
EaeI YGGCCR 1 cut(s) 48
Eam1104I CTCTTC 4 cut(s) 363, 531, 733, 1038
EarI CTCTTC 4 cut(s) 363, 531, 733, 1038
EciI GGCGGA 2 cut(s) 107, 972
Eco130I CCWWGG 1 cut(s) 208
Eco47I GGWCC 1 cut(s) 192
Eco91I GGTNACC 1 cut(s) 1010
EcoO109I RGGNCCY 1 cut(s) 192
EcoO65I GGTNACC 1 cut(s) 1010
EcoRII CCWGG 1 cut(s) 149
EcoT14I CCWWGG 1 cut(s) 208
EcoT22I ATGCAT 1 cut(s) 232
ErhI CCWWGG 1 cut(s) 208
FaeI CATG 3 cut(s) 305, 360, 940
FaqI GGGAC 2 cut(s) 533, 1379
FatI CATG 3 cut(s) 301, 356, 936
FauNDI CATATG 2 cut(s) 714, 1366
FbaI TGATCA 1 cut(s) 895
FblI GTMKAC 1 cut(s) 1359
Fnu4HI GCNGC 2 cut(s) 430, 955
FokI GGATG 7 cut(s) 294, 461, 470, 982, 1064, 1074, 1214
Fsp4HI GCNGC 2 cut(s) 430, 955
FspAI RTGCGCAY 1 cut(s) 306
FspBI CTAG 5 cut(s) 630, 944, 1178, 1268, 1405
FspI TGCGCA 1 cut(s) 306
GlaI GCGC 3 cut(s) 39, 306, 1256
GluI GCNGC 2 cut(s) 430, 955
HaeIII GGCC 1 cut(s) 50
HapII CCGG 2 cut(s) 9, 311
HhaI GCGC 3 cut(s) 40, 307, 1257
Hin1I GRCGYC 1 cut(s) 961
Hin1II CATG 3 cut(s) 305, 360, 940
Hin6I GCGC 3 cut(s) 38, 305, 1255
HinP1I GCGC 3 cut(s) 38, 305, 1255
HincII GTYRAC 1 cut(s) 1093
HindII GTYRAC 1 cut(s) 1093
HindIII AAGCTT 1 cut(s) 775
HinfI GANTC 4 cut(s) 163, 546, 576, 736
HpaII CCGG 2 cut(s) 9, 311
HphI GGTGA 3 cut(s) 631, 1010, 1178
Hpy166II GTNNAC 3 cut(s) 587, 1093, 1360
Hpy188I TCNGA 8 cut(s) 175, 284, 534, 545, 733, 802, 1141, 1282
Hpy188III TCNNGA 2 cut(s) 344, 365
Hpy8I GTNNAC 3 cut(s) 587, 1093, 1360
HpyAV CCTTC 3 cut(s) 215, 274, 562
HpyCH4III ACNGT 4 cut(s) 127, 744, 1016, 1097
HpyCH4IV ACGT 2 cut(s) 961, 1356
HpyCH4V TGCA 9 cut(s) 230, 242, 432, 608, 673, 1065, 1072, 1236, 1248
HpyF10VI GCNNNNNNNGC 3 cut(s) 435, 774, 1254
HpyF3I CTNAG 7 cut(s) 172, 270, 281, 542, 1022, 1221, 1293
HpySE526I ACGT 2 cut(s) 961, 1356
Hsp92I GRCGYC 1 cut(s) 961
Hsp92II CATG 3 cut(s) 305, 360, 940
HspAI GCGC 3 cut(s) 38, 305, 1255
Ksp22I TGATCA 1 cut(s) 895
Kzo9I GATC 8 cut(s) 70, 720, 868, 895, 1134, 1288, 1296, 1371
LguI GCTCTTC 1 cut(s) 531
Lsp1109I GCAGC 1 cut(s) 416
LweI GCATC 4 cut(s) 316, 1052, 1059, 1192
MaeI CTAG 5 cut(s) 630, 944, 1178, 1268, 1405
MaeII ACGT 2 cut(s) 961, 1356
MaeIII GTNAC 2 cut(s) 1010, 1016
MalI GATC 8 cut(s) 72, 722, 870, 897, 1136, 1290, 1298, 1373
MboI GATC 8 cut(s) 70, 720, 868, 895, 1134, 1288, 1296, 1371
MboII GAAGA 6 cut(s) 380, 518, 632, 715, 720, 1055
MfeI CAATTG 1 cut(s) 752
MflI RGATCY 2 cut(s) 720, 868
MhlI GDGCHC 1 cut(s) 1227
MlsI TGGCCA 1 cut(s) 50
MluCI AATT 8 cut(s) 63, 681, 707, 752, 1148, 1231, 1283, 1300
MluNI TGGCCA 1 cut(s) 50
MlyI GAGTC 3 cut(s) 172, 555, 730
Mox20I TGGCCA 1 cut(s) 50
Mph1103I ATGCAT 1 cut(s) 232
MscI TGGCCA 1 cut(s) 50
MseI TTAA 5 cut(s) 20, 33, 200, 645, 1121
MslI CAYNNNNRTG 2 cut(s) 937, 1023
Msp20I TGGCCA 1 cut(s) 50
MspA1I CMGCKG 1 cut(s) 1114
MspCI CTTAAG 1 cut(s) 19
MspI CCGG 2 cut(s) 9, 311
MspR9I CCNGG 1 cut(s) 151
MunI CAATTG 1 cut(s) 752
Mva1269I GAATGC 1 cut(s) 12
MvaI CCWGG 1 cut(s) 151
MvnI CGCG 1 cut(s) 1257
MwoI GCNNNNNNNGC 3 cut(s) 435, 774, 1254
NdeI CATATG 2 cut(s) 714, 1366
NdeII GATC 8 cut(s) 70, 720, 868, 895, 1134, 1288, 1296, 1371
NlaIII CATG 3 cut(s) 305, 360, 940
NlaIV GGNNCC 2 cut(s) 870, 922
NmeAIII GCCGAG 1 cut(s) 676
NmuCI GTSAC 1 cut(s) 1016
NsbI TGCGCA 1 cut(s) 306
NsiI ATGCAT 1 cut(s) 232
NspI RCATGY 1 cut(s) 940
OliI CACNNNNGTG 1 cut(s) 1023
PciI ACATGT 1 cut(s) 936
PciSI GCTCTTC 1 cut(s) 531
PcsI WCGNNNNNNNCGW 1 cut(s) 385
PctI GAATGC 1 cut(s) 12
PfeI GAWTC 1 cut(s) 576
PflMI CCANNNNNTGG 1 cut(s) 156
PkrI GCNGC 2 cut(s) 431, 956
PleI GAGTC 3 cut(s) 171, 554, 730
PpsI GAGTC 3 cut(s) 171, 554, 730
PpuMI RGGWCCY 1 cut(s) 192
PscI ACATGT 1 cut(s) 936
Psp5II RGGWCCY 1 cut(s) 192
Psp6I CCWGG 1 cut(s) 149
PspEI GGTNACC 1 cut(s) 1010
PspGI CCWGG 1 cut(s) 149
PspN4I GGNNCC 2 cut(s) 870, 922
PspPI GGNCC 1 cut(s) 192
PspPPI RGGWCCY 1 cut(s) 192
PstI CTGCAG 1 cut(s) 610
PsuI RGATCY 2 cut(s) 720, 868
PvuII CAGCTG 1 cut(s) 1114
RsaI GTAC 3 cut(s) 7, 602, 762
RsaNI GTAC 3 cut(s) 6, 601, 761
RseI CAYNNNNRTG 2 cut(s) 937, 1023
SapI GCTCTTC 1 cut(s) 531
SaqAI TTAA 5 cut(s) 20, 33, 200, 645, 1121
SatI GCNGC 2 cut(s) 430, 955
Sau3AI GATC 8 cut(s) 70, 720, 868, 895, 1134, 1288, 1296, 1371
Sau96I GGNCC 1 cut(s) 192
SchI GAGTC 3 cut(s) 172, 555, 730
ScrFI CCNGG 1 cut(s) 151
SduI GDGCHC 1 cut(s) 1227
SfaNI GCATC 4 cut(s) 316, 1052, 1059, 1192
SfcI CTRYAG 2 cut(s) 439, 606
SinI GGWCC 1 cut(s) 192
SmiMI CAYNNNNRTG 2 cut(s) 937, 1023
SmlI CTYRAG 1 cut(s) 19
SmoI CTYRAG 1 cut(s) 19
SpeI ACTAGT 1 cut(s) 629
Sse9I AATT 8 cut(s) 63, 681, 707, 752, 1148, 1231, 1283, 1300
SsiI CCGC 5 cut(s) 92, 954, 957, 967, 1205
SspI AATATT 1 cut(s) 856
SspMI CTAG 5 cut(s) 630, 944, 1178, 1268, 1405
StyD4I CCNGG 1 cut(s) 149
StyI CCWWGG 1 cut(s) 208
TaaI ACNGT 4 cut(s) 127, 744, 1016, 1097
TaiI ACGT 2 cut(s) 964, 1359
TaqI TCGA 4 cut(s) 106, 133, 388, 739
TasI AATT 8 cut(s) 63, 681, 707, 752, 1148, 1231, 1283, 1300
TatI WGTACW 1 cut(s) 760
TauI GCSGC 1 cut(s) 957
TfiI GAWTC 1 cut(s) 576
Tru1I TTAA 5 cut(s) 20, 33, 200, 645, 1121
Tru9I TTAA 5 cut(s) 20, 33, 200, 645, 1121
TscAI CASTG 2 cut(s) 521, 749
TseFI GTSAC 1 cut(s) 1016
TseI GCWGC 1 cut(s) 429
Tsp45I GTSAC 1 cut(s) 1016
TspDTI ATGAA 2 cut(s) 234, 568
TspGWI ACGGA 1 cut(s) 467
TspRI CASTG 2 cut(s) 521, 749
Van91I CCANNNNNTGG 1 cut(s) 156
Vha464I CTTAAG 1 cut(s) 19
VpaK11BI GGWCC 1 cut(s) 192
XapI RAATTY 1 cut(s) 1283
XceI RCATGY 1 cut(s) 940
XcmI CCANNNNNNNNNTGG 2 cut(s) 85, 1111
XmiI GTMKAC 1 cut(s) 1359
XspI CTAG 5 cut(s) 630, 944, 1178, 1268, 1405
ZraI GACGTC 1 cut(s) 962
Zsp2I ATGCAT 1 cut(s) 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.