Rh5CG143900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0018767
Physical Location & Seq
Forward (+)
12801869 .. 12802402
534 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG143900.1

Sequence Viewer

Length: 534 bp
ATGTTCAGTAGTGATGTTATTGATCAATGCCGTTTTGGTATCAACGGCACCATATATACATACATGTGTCTAGGTGTTTGCGGCGGACGTCTGCGGATGTGCCAGAGGGATTTTGTAGGTAAGCAGGATTTTGTAGGTAACCGTCACCTAAGTGTTTGGGAGTGGAAAGAAGAGGTGGATGACAATGGATGCAAGATGCAAAAATGGTGCTTGATAGTTGACCGTCTTTCCATCAACCAGCTGGTTTTAAAATATCCTTTGATCTCTGAAAATAAATTGCCGTATGGTAGGAAGTTTCAGGTGCTAGGTTTTCACCCATACAATGAGGATGCGGTGTTTTTGGAGACTGAGCACCCAAATTGCATTGCTCTGTGCAATATGCGCGAAAGAACCCTAGAGATGGTTTCAGAATTTGATCCTAAGATCAATTTGGAAAGCTGGTTTGGAAGTTGGTTTCGCTCTGCGTGTTTGGGAAGCAGAAACGTCTACCCATATGTGATCCCGTGGTTGCCTACACCTGTCCCTAAACTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

177

Amino Acids

20.69

Weight (kDa)

6.8

Isoelectric Point (pI)

30.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018767)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47695
rosa_chinensis RchiOBHm_Chr5g0018111
rosa_laevigata RLG00000032321 RLG00000032322
rosa_multiflora Rmu_sc0010280.1_g000022 Rmu_sc0013814.1_g000004
rosa_roxburghii Rroxscaffold_1G00069250
rosa_samantha Rh5CG143900 Rh5DG133700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 91
AccB1I GGYRCC 1 cut(s) 47
AccI GTMKAC 1 cut(s) 486
AccII CGCG 1 cut(s) 384
AciI CCGC 4 cut(s) 81, 84, 94, 332
AclWI GGATC 2 cut(s) 410, 493
AcsI RAATTY 1 cut(s) 410
AcyI GRCGYC 1 cut(s) 88
AfiI CCNNNNNNNGG 1 cut(s) 400
AflIII ACRYGT 1 cut(s) 63
AjuI GAANNNNNNNTTGG 2 cut(s) 426, 458
AleI CACNNNNGTG 1 cut(s) 150
AluBI AGCT 2 cut(s) 241, 438
AluI AGCT 2 cut(s) 241, 438
Alw21I GWGCWC 1 cut(s) 354
Alw26I GTCTC 1 cut(s) 338
AlwI GGATC 2 cut(s) 410, 493
ApoI RAATTY 1 cut(s) 410
AspLEI GCGC 1 cut(s) 384
AsuHPI GGTGA 2 cut(s) 137, 305
BanI GGYRCC 1 cut(s) 47
Bbv12I GWGCWC 1 cut(s) 354
BccI CCATC 2 cut(s) 239, 394
BceAI ACGGC 3 cut(s) 15, 61, 265
BclI TGATCA 1 cut(s) 22
BcoDI GTCTC 1 cut(s) 338
BfaI CTAG 4 cut(s) 71, 305, 395, 532
BisI GCNGC 1 cut(s) 82
BlsI GCNGC 1 cut(s) 83
BmiI GGNNCC 1 cut(s) 49
BmsI GCATC 3 cut(s) 179, 186, 319
BsaHI GRCGYC 1 cut(s) 88
BsaJI CCNNGG 1 cut(s) 503
Bsc4I CCNNNNNNNGG 1 cut(s) 400
Bse3DI GCAATG 1 cut(s) 363
BseDI CCNNGG 1 cut(s) 503
BseGI GGATG 4 cut(s) 102, 184, 194, 334
BseLI CCNNNNNNNGG 1 cut(s) 400
BseMI GCAATG 1 cut(s) 363
BseMII CTCAG 1 cut(s) 339
Bsh1236I CGCG 1 cut(s) 384
BshNI GGYRCC 1 cut(s) 47
BsiHKAI GWGCWC 1 cut(s) 354
BslFI GGGAC 1 cut(s) 506
BslI CCNNNNNNNGG 1 cut(s) 400
BsmAI GTCTC 1 cut(s) 338
BsmFI GGGAC 1 cut(s) 506
Bsp1286I GDGCHC 1 cut(s) 354
Bsp143I GATC 5 cut(s) 22, 261, 415, 423, 498
BspACI CCGC 4 cut(s) 81, 84, 94, 332
BspCNI CTCAG 1 cut(s) 340
BspFNI CGCG 1 cut(s) 384
BspLI GGNNCC 1 cut(s) 49
BspPI GGATC 2 cut(s) 410, 493
BspT107I GGYRCC 1 cut(s) 47
BsrDI GCAATG 1 cut(s) 363
BssECI CCNNGG 1 cut(s) 503
BssMI GATC 5 cut(s) 22, 261, 415, 423, 498
BssNI GRCGYC 1 cut(s) 88
Bst4CI ACNGT 2 cut(s) 143, 224
Bst6I CTCTTC 1 cut(s) 165
BstACI GRCGYC 1 cut(s) 88
BstDEI CTNAG 3 cut(s) 149, 348, 420
BstDSI CCRYGG 1 cut(s) 503
BstEII GGTNACC 1 cut(s) 137
BstF5I GGATG 4 cut(s) 102, 184, 194, 334
BstFNI CGCG 1 cut(s) 384
BstHHI GCGC 1 cut(s) 384
BstKTI GATC 5 cut(s) 25, 264, 418, 426, 501
BstMAI GTCTC 1 cut(s) 338
BstMBI GATC 5 cut(s) 22, 261, 415, 423, 498
BstMWI GCNNNNNNNGC 1 cut(s) 381
BstNSI RCATGY 1 cut(s) 67
BstPI GGTNACC 1 cut(s) 137
BstUI CGCG 1 cut(s) 384
BtgI CCRYGG 1 cut(s) 503
BtsCI GGATG 4 cut(s) 102, 184, 194, 334
CfoI GCGC 1 cut(s) 384
CviAII CATG 1 cut(s) 64
CviJI RGCY 2 cut(s) 241, 438
CviKI_1 RGCY 2 cut(s) 241, 438
DdeI CTNAG 3 cut(s) 149, 348, 420
DpnI GATC 5 cut(s) 24, 263, 417, 425, 500
DpnII GATC 5 cut(s) 22, 261, 415, 423, 498
DraI TTTAAA 1 cut(s) 249
Eam1104I CTCTTC 1 cut(s) 165
EarI CTCTTC 1 cut(s) 165
EciI GGCGGA 1 cut(s) 99
Eco91I GGTNACC 1 cut(s) 137
EcoO65I GGTNACC 1 cut(s) 137
FaeI CATG 1 cut(s) 67
FaqI GGGAC 1 cut(s) 506
FatI CATG 1 cut(s) 63
FauNDI CATATG 1 cut(s) 493
FbaI TGATCA 1 cut(s) 22
FblI GTMKAC 1 cut(s) 486
Fnu4HI GCNGC 1 cut(s) 82
FokI GGATG 4 cut(s) 109, 191, 201, 341
Fsp4HI GCNGC 1 cut(s) 82
FspBI CTAG 4 cut(s) 71, 305, 395, 532
GlaI GCGC 1 cut(s) 383
GluI GCNGC 1 cut(s) 82
HhaI GCGC 1 cut(s) 384
Hin1I GRCGYC 1 cut(s) 88
Hin1II CATG 1 cut(s) 67
Hin6I GCGC 1 cut(s) 382
HinP1I GCGC 1 cut(s) 382
HincII GTYRAC 1 cut(s) 220
HindII GTYRAC 1 cut(s) 220
HphI GGTGA 2 cut(s) 137, 305
Hpy166II GTNNAC 2 cut(s) 220, 487
Hpy188I TCNGA 2 cut(s) 268, 409
Hpy8I GTNNAC 2 cut(s) 220, 487
HpyCH4III ACNGT 2 cut(s) 143, 224
HpyCH4IV ACGT 2 cut(s) 88, 483
HpyCH4V TGCA 4 cut(s) 192, 199, 363, 375
HpyF10VI GCNNNNNNNGC 1 cut(s) 381
HpyF3I CTNAG 3 cut(s) 149, 348, 420
HpySE526I ACGT 2 cut(s) 88, 483
Hsp92I GRCGYC 1 cut(s) 88
Hsp92II CATG 1 cut(s) 67
HspAI GCGC 1 cut(s) 382
Ksp22I TGATCA 1 cut(s) 22
Kzo9I GATC 5 cut(s) 22, 261, 415, 423, 498
LpnPI CCDG 6 cut(s) 110, 116, 227, 251, 284, 424
LweI GCATC 3 cut(s) 179, 186, 319
MaeI CTAG 4 cut(s) 71, 305, 395, 532
MaeII ACGT 2 cut(s) 88, 483
MaeIII GTNAC 2 cut(s) 137, 143
MalI GATC 5 cut(s) 24, 263, 417, 425, 500
MboI GATC 5 cut(s) 22, 261, 415, 423, 498
MboII GAAGA 1 cut(s) 182
MhlI GDGCHC 1 cut(s) 354
MluCI AATT 4 cut(s) 275, 358, 410, 427
MnlI CCTC 3 cut(s) 99, 166, 319
MseI TTAA 1 cut(s) 248
MslI CAYNNNNRTG 2 cut(s) 64, 150
MspA1I CMGCKG 1 cut(s) 241
MvnI CGCG 1 cut(s) 384
MwoI GCNNNNNNNGC 1 cut(s) 381
NdeI CATATG 1 cut(s) 493
NdeII GATC 5 cut(s) 22, 261, 415, 423, 498
NlaIII CATG 1 cut(s) 67
NlaIV GGNNCC 1 cut(s) 49
NmuCI GTSAC 1 cut(s) 143
NspI RCATGY 1 cut(s) 67
OliI CACNNNNGTG 1 cut(s) 150
PciI ACATGT 1 cut(s) 63
PkrI GCNGC 1 cut(s) 83
PscI ACATGT 1 cut(s) 63
PspEI GGTNACC 1 cut(s) 137
PspN4I GGNNCC 1 cut(s) 49
PvuII CAGCTG 1 cut(s) 241
RseI CAYNNNNRTG 2 cut(s) 64, 150
SaqAI TTAA 1 cut(s) 248
SatI GCNGC 1 cut(s) 82
Sau3AI GATC 5 cut(s) 22, 261, 415, 423, 498
SduI GDGCHC 1 cut(s) 354
SfaNI GCATC 3 cut(s) 179, 186, 319
SmiMI CAYNNNNRTG 2 cut(s) 64, 150
Sse9I AATT 4 cut(s) 275, 358, 410, 427
SsiI CCGC 4 cut(s) 81, 84, 94, 332
SspMI CTAG 4 cut(s) 71, 305, 395, 532
TaaI ACNGT 2 cut(s) 143, 224
TaiI ACGT 2 cut(s) 91, 486
TasI AATT 4 cut(s) 275, 358, 410, 427
TauI GCSGC 1 cut(s) 84
Tru1I TTAA 1 cut(s) 248
Tru9I TTAA 1 cut(s) 248
TseFI GTSAC 1 cut(s) 143
Tsp45I GTSAC 1 cut(s) 143
XapI RAATTY 1 cut(s) 410
XceI RCATGY 1 cut(s) 67
XcmI CCANNNNNNNNNTGG 1 cut(s) 238
XmiI GTMKAC 1 cut(s) 486
XspI CTAG 4 cut(s) 71, 305, 395, 532
ZraI GACGTC 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.