Rh5DG133700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0018767
Physical Location & Seq
Forward (+)
13190456 .. 13192046
1591 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG133700.1

Sequence Viewer

Length: 981 bp
ATGACTTGGTTTTGTGCTGCAAAAGCTACAGAACCTACGAGGAGGATGGGGAGATTTACTCCATCCGTAATCCTTACTACATCTGTAATCCATATACGAAGCAGTGGGTTGCTCTTCCTCCAAACCATCTCAGAGTCCCCTTCGGCTGTGGAACACTTGTGGGATTCATCTGTGAACCATACTTTAGCTAGGTACTCTGCAGATGGTAAAGAAGAACAAACTAGTAGTATCACCCTTAATGCCGAGTATAGGTGGAGTGTTGTGCAAATGGTAATTTGTTTTATATCATCAACGCTTGAATTACATATGGAGATCTTCTCTTCCGAGACTCGACAGTGGAAGCAATTGGTTGTACAATGCCCACCAAGCTTTATATGTTTGGGTGCTGGTTCGGTGGTCGTTGCTTACAATGGAATGTTGTATTGGTTGTTAGGTGCTAATAATAATATTGTTGATTTGGATCCAATGTTCAGTAGTGATGTTATTGATCAATGCCGTTTTGGTATCAACGGCACCATATATACATACATGTGTCTAGGTGTTTGCGGCGGACGTCTGCGGATGTGCCAGAGGGATTTTGTAGGTAACCGTCACCTAAGTGTTTGGGAGTGGAAAGAAGAGGTGGATGACAATGGATGCAAGATGCAAAAATGGTGCTTGATAGTTGACCGTCTTTCCATCAACCAGCTGGTTTTAAAATATCCTTTGATCTCTGAAAATAAATTGCCGTATGGTAGGAAGTTTCAGGTGCTAGGTTTTCACCCATACAATGAGGATGCGGTGTTTTTGGAGACTGAGCACCCAAATTGCATTGCTCTGTGCAATATGCGCGAAAGAACCCTAGAGATGGTTTCAGAATTTGATCCTAAGATCAATTTGGAAAGCTGGTTTGGAAGTTGGTTTCGCTCTGCGTGTTTGGGAAGCAGAAACGTCTACCCATATGTGATCCCGTGGTTGCCTACACCTGTCCCTAAACTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

326

Amino Acids

37.33

Weight (kDa)

6.18

Isoelectric Point (pI)

41.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
b-prop_At3g26010-like PF24750 87 - 286 2.2e-09 F-box protein At3g26010-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018767)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47695
rosa_chinensis RchiOBHm_Chr5g0018111
rosa_laevigata RLG00000032321 RLG00000032322
rosa_multiflora Rmu_sc0010280.1_g000022 Rmu_sc0013814.1_g000004
rosa_roxburghii Rroxscaffold_1G00069250
rosa_samantha Rh5CG143900 Rh5DG133700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 556
AccB1I GGYRCC 1 cut(s) 512
AccI GTMKAC 1 cut(s) 933
AccII CGCG 1 cut(s) 831
AciI CCGC 4 cut(s) 546, 549, 559, 779
AclWI GGATC 4 cut(s) 455, 468, 857, 940
AcsI RAATTY 1 cut(s) 857
AcyI GRCGYC 1 cut(s) 553
AfaI GTAC 2 cut(s) 194, 354
AfiI CCNNNNNNNGG 2 cut(s) 249, 847
AflIII ACRYGT 1 cut(s) 528
AgsI TTSAA 1 cut(s) 299
AhlI ACTAGT 1 cut(s) 221
AjuI GAANNNNNNNTTGG 4 cut(s) 406, 438, 873, 905
AleI CACNNNNGTG 1 cut(s) 597
AloI GAACNNNNNNTCC 2 cut(s) 452, 484
AluBI AGCT 5 cut(s) 26, 188, 369, 688, 885
AluI AGCT 5 cut(s) 26, 188, 369, 688, 885
Alw21I GWGCWC 1 cut(s) 801
Alw26I GTCTC 2 cut(s) 320, 785
AlwI GGATC 4 cut(s) 455, 468, 857, 940
ApeKI GCWGC 1 cut(s) 17
ApoI RAATTY 1 cut(s) 857
AspLEI GCGC 1 cut(s) 831
AsuHPI GGTGA 3 cut(s) 223, 584, 752
BamHI GGATCC 1 cut(s) 460
BanI GGYRCC 1 cut(s) 512
Bbv12I GWGCWC 1 cut(s) 801
BbvI GCAGC 1 cut(s) 4
BccI CCATC 6 cut(s) 40, 70, 134, 197, 686, 841
BceAI ACGGC 3 cut(s) 480, 526, 712
BclI TGATCA 1 cut(s) 487
BcoDI GTCTC 2 cut(s) 320, 785
BcuI ACTAGT 1 cut(s) 221
BfaI CTAG 6 cut(s) 189, 222, 536, 752, 842, 979
BfmI CTRYAG 2 cut(s) 27, 198
BglII AGATCT 1 cut(s) 312
BisI GCNGC 2 cut(s) 18, 547
BlsI GCNGC 2 cut(s) 19, 548
BmiI GGNNCC 2 cut(s) 462, 514
BmsI GCATC 3 cut(s) 626, 633, 766
BplI GAGNNNNNCTC 4 cut(s) 43, 75, 302, 334
BsaBI GATNNNNATC 1 cut(s) 459
BsaHI GRCGYC 1 cut(s) 553
BsaJI CCNNGG 1 cut(s) 950
Bsc4I CCNNNNNNNGG 2 cut(s) 249, 847
Bse3DI GCAATG 1 cut(s) 810
Bse8I GATNNNNATC 1 cut(s) 459
BseDI CCNNGG 1 cut(s) 950
BseGI GGATG 6 cut(s) 51, 62, 567, 631, 641, 781
BseJI GATNNNNATC 1 cut(s) 459
BseLI CCNNNNNNNGG 2 cut(s) 249, 847
BseMI GCAATG 1 cut(s) 810
BseMII CTCAG 2 cut(s) 144, 786
BseRI GAGGAG 1 cut(s) 55
BseXI GCAGC 1 cut(s) 4
Bsh1236I CGCG 1 cut(s) 831
BshNI GGYRCC 1 cut(s) 512
BsiHKAI GWGCWC 1 cut(s) 801
BslFI GGGAC 2 cut(s) 121, 953
BslI CCNNNNNNNGG 2 cut(s) 249, 847
BsmAI GTCTC 2 cut(s) 320, 785
BsmFI GGGAC 2 cut(s) 121, 953
Bsp1286I GDGCHC 1 cut(s) 801
Bsp1407I TGTACA 1 cut(s) 352
Bsp143I GATC 7 cut(s) 312, 460, 487, 708, 862, 870, 945
BspACI CCGC 4 cut(s) 546, 549, 559, 779
BspCNI CTCAG 2 cut(s) 143, 787
BspFNI CGCG 1 cut(s) 831
BspLI GGNNCC 2 cut(s) 462, 514
BspMAI CTGCAG 1 cut(s) 202
BspPI GGATC 4 cut(s) 455, 468, 857, 940
BspQI GCTCTTC 1 cut(s) 119
BspT107I GGYRCC 1 cut(s) 512
BsrDI GCAATG 1 cut(s) 810
BsrGI TGTACA 1 cut(s) 352
BssECI CCNNGG 1 cut(s) 950
BssMI GATC 7 cut(s) 312, 460, 487, 708, 862, 870, 945
BssNI GRCGYC 1 cut(s) 553
Bst4CI ACNGT 3 cut(s) 336, 590, 671
Bst6I CTCTTC 3 cut(s) 119, 325, 612
BstACI GRCGYC 1 cut(s) 553
BstAUI TGTACA 1 cut(s) 352
BstDEI CTNAG 4 cut(s) 130, 596, 795, 867
BstDSI CCRYGG 1 cut(s) 950
BstEII GGTNACC 1 cut(s) 584
BstF5I GGATG 6 cut(s) 51, 62, 567, 631, 641, 781
BstFNI CGCG 1 cut(s) 831
BstHHI GCGC 1 cut(s) 831
BstKTI GATC 7 cut(s) 315, 463, 490, 711, 865, 873, 948
BstMAI GTCTC 2 cut(s) 320, 785
BstMBI GATC 7 cut(s) 312, 460, 487, 708, 862, 870, 945
BstMWI GCNNNNNNNGC 3 cut(s) 23, 366, 828
BstNSI RCATGY 1 cut(s) 532
BstPI GGTNACC 1 cut(s) 584
BstSFI CTRYAG 2 cut(s) 27, 198
BstUI CGCG 1 cut(s) 831
BstV1I GCAGC 1 cut(s) 4
BstX2I RGATCY 2 cut(s) 312, 460
BstYI RGATCY 2 cut(s) 312, 460
BtgI CCRYGG 1 cut(s) 950
BtsCI GGATG 6 cut(s) 51, 62, 567, 631, 641, 781
BtsI GCAGTG 1 cut(s) 109
BtsIMutI CAGTG 2 cut(s) 109, 341
CfoI GCGC 1 cut(s) 831
Csp6I GTAC 2 cut(s) 193, 353
CviAII CATG 1 cut(s) 529
CviJI RGCY 6 cut(s) 26, 146, 188, 369, 688, 885
CviKI_1 RGCY 6 cut(s) 26, 146, 188, 369, 688, 885
CviQI GTAC 2 cut(s) 193, 353
DdeI CTNAG 4 cut(s) 130, 596, 795, 867
DpnI GATC 7 cut(s) 314, 462, 489, 710, 864, 872, 947
DpnII GATC 7 cut(s) 312, 460, 487, 708, 862, 870, 945
DraI TTTAAA 1 cut(s) 696
Eam1104I CTCTTC 3 cut(s) 119, 325, 612
EarI CTCTTC 3 cut(s) 119, 325, 612
EciI GGCGGA 1 cut(s) 564
Eco91I GGTNACC 1 cut(s) 584
EcoO65I GGTNACC 1 cut(s) 584
FaeI CATG 1 cut(s) 532
FaqI GGGAC 2 cut(s) 121, 953
FatI CATG 1 cut(s) 528
FauNDI CATATG 2 cut(s) 306, 940
FbaI TGATCA 1 cut(s) 487
FblI GTMKAC 1 cut(s) 933
Fnu4HI GCNGC 2 cut(s) 18, 547
FokI GGATG 6 cut(s) 49, 58, 574, 638, 648, 788
Fsp4HI GCNGC 2 cut(s) 18, 547
FspBI CTAG 6 cut(s) 189, 222, 536, 752, 842, 979
GlaI GCGC 1 cut(s) 830
GluI GCNGC 2 cut(s) 18, 547
HhaI GCGC 1 cut(s) 831
Hin1I GRCGYC 1 cut(s) 553
Hin1II CATG 1 cut(s) 532
Hin6I GCGC 1 cut(s) 829
HinP1I GCGC 1 cut(s) 829
HincII GTYRAC 1 cut(s) 667
HindII GTYRAC 1 cut(s) 667
HindIII AAGCTT 1 cut(s) 367
HinfI GANTC 3 cut(s) 134, 164, 328
HphI GGTGA 3 cut(s) 223, 584, 752
Hpy166II GTNNAC 3 cut(s) 175, 667, 934
Hpy188I TCNGA 4 cut(s) 133, 325, 715, 856
Hpy8I GTNNAC 3 cut(s) 175, 667, 934
HpyAV CCTTC 1 cut(s) 150
HpyCH4III ACNGT 3 cut(s) 336, 590, 671
HpyCH4IV ACGT 2 cut(s) 553, 930
HpyCH4V TGCA 7 cut(s) 20, 200, 265, 639, 646, 810, 822
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 366, 828
HpyF3I CTNAG 4 cut(s) 130, 596, 795, 867
HpySE526I ACGT 2 cut(s) 553, 930
Hsp92I GRCGYC 1 cut(s) 553
Hsp92II CATG 1 cut(s) 532
HspAI GCGC 1 cut(s) 829
Ksp22I TGATCA 1 cut(s) 487
Kzo9I GATC 7 cut(s) 312, 460, 487, 708, 862, 870, 945
LguI GCTCTTC 1 cut(s) 119
LpnPI CCDG 6 cut(s) 372, 581, 674, 698, 731, 871
Lsp1109I GCAGC 1 cut(s) 4
LweI GCATC 3 cut(s) 626, 633, 766
MaeI CTAG 6 cut(s) 189, 222, 536, 752, 842, 979
MaeII ACGT 2 cut(s) 553, 930
MaeIII GTNAC 2 cut(s) 584, 590
MalI GATC 7 cut(s) 314, 462, 489, 710, 864, 872, 947
MboI GATC 7 cut(s) 312, 460, 487, 708, 862, 870, 945
MboII GAAGA 5 cut(s) 106, 224, 307, 312, 629
MfeI CAATTG 1 cut(s) 344
MflI RGATCY 2 cut(s) 312, 460
MhlI GDGCHC 1 cut(s) 801
MluCI AATT 7 cut(s) 273, 299, 344, 722, 805, 857, 874
MlyI GAGTC 2 cut(s) 143, 322
MnlI CCTC 6 cut(s) 33, 36, 128, 564, 613, 766
MseI TTAA 2 cut(s) 237, 695
MslI CAYNNNNRTG 2 cut(s) 529, 597
MspA1I CMGCKG 1 cut(s) 688
MunI CAATTG 1 cut(s) 344
MvnI CGCG 1 cut(s) 831
MwoI GCNNNNNNNGC 3 cut(s) 23, 366, 828
NdeI CATATG 2 cut(s) 306, 940
NdeII GATC 7 cut(s) 312, 460, 487, 708, 862, 870, 945
NlaIII CATG 1 cut(s) 532
NlaIV GGNNCC 2 cut(s) 462, 514
NmeAIII GCCGAG 1 cut(s) 268
NmuCI GTSAC 1 cut(s) 590
NspI RCATGY 1 cut(s) 532
OliI CACNNNNGTG 1 cut(s) 597
PciI ACATGT 1 cut(s) 528
PciSI GCTCTTC 1 cut(s) 119
PfeI GAWTC 1 cut(s) 164
PkrI GCNGC 2 cut(s) 19, 548
PleI GAGTC 2 cut(s) 142, 322
PpsI GAGTC 2 cut(s) 142, 322
PscI ACATGT 1 cut(s) 528
PspEI GGTNACC 1 cut(s) 584
PspN4I GGNNCC 2 cut(s) 462, 514
PstI CTGCAG 1 cut(s) 202
PsuI RGATCY 2 cut(s) 312, 460
PvuII CAGCTG 1 cut(s) 688
RsaI GTAC 2 cut(s) 194, 354
RsaNI GTAC 2 cut(s) 193, 353
RseI CAYNNNNRTG 2 cut(s) 529, 597
SapI GCTCTTC 1 cut(s) 119
SaqAI TTAA 2 cut(s) 237, 695
SatI GCNGC 2 cut(s) 18, 547
Sau3AI GATC 7 cut(s) 312, 460, 487, 708, 862, 870, 945
SchI GAGTC 2 cut(s) 143, 322
SduI GDGCHC 1 cut(s) 801
SfaNI GCATC 3 cut(s) 626, 633, 766
SfcI CTRYAG 2 cut(s) 27, 198
SmiMI CAYNNNNRTG 2 cut(s) 529, 597
SpeI ACTAGT 1 cut(s) 221
Sse9I AATT 7 cut(s) 273, 299, 344, 722, 805, 857, 874
SsiI CCGC 4 cut(s) 546, 549, 559, 779
SspI AATATT 1 cut(s) 448
SspMI CTAG 6 cut(s) 189, 222, 536, 752, 842, 979
TaaI ACNGT 3 cut(s) 336, 590, 671
TaiI ACGT 2 cut(s) 556, 933
TaqI TCGA 1 cut(s) 331
TasI AATT 7 cut(s) 273, 299, 344, 722, 805, 857, 874
TatI WGTACW 1 cut(s) 352
TauI GCSGC 1 cut(s) 549
TfiI GAWTC 1 cut(s) 164
Tru1I TTAA 2 cut(s) 237, 695
Tru9I TTAA 2 cut(s) 237, 695
TscAI CASTG 2 cut(s) 109, 341
TseFI GTSAC 1 cut(s) 590
TseI GCWGC 1 cut(s) 17
Tsp45I GTSAC 1 cut(s) 590
TspDTI ATGAA 1 cut(s) 156
TspGWI ACGGA 1 cut(s) 55
TspRI CASTG 2 cut(s) 109, 341
XapI RAATTY 1 cut(s) 857
XceI RCATGY 1 cut(s) 532
XcmI CCANNNNNNNNNTGG 1 cut(s) 685
XmiI GTMKAC 1 cut(s) 933
XspI CTAG 6 cut(s) 189, 222, 536, 752, 842, 979
ZraI GACGTC 1 cut(s) 554
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.