Rmu_sc0013814.1_g000004

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013814.1
OG0018767
Physical Location & Seq
Forward (+)
13519 .. 16497
2979 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013814.1_g000004.1.cds

Sequence Viewer

Length: 1740 bp
atgtctagatctagcagagctctgctagagttgggagagcgccgccctcgggtttggcctctctgcacctctctccgtcctgtatggagtacatctacggtgtcttctttgggggttcctaaatcaagacccggctaccacagtgtcttctctgtcgcaaattccgtctgtgccattatggctggtagcgtgatggcttgtgccctatcggattttctaccttttgatggtggtggctcgcataggccaaggcggcgggcaaggctcaaagatcaaggtgcgttgctacaggcggaggcagtcttctctccacagatggtaacacccccatcgaggacgctttctggctactcggtgtcccttggttgtttggcggcaaagggatcaactgattgggtggttgatggcacggtggatgtcggcatcctttctctgcgtgggttatcttgtggtacgggggtcaggagatctctggttccgtggtgcagggagaccggaggcatggtgggtgtttggtgcggcgacggcaggatcacaagcaatttggctttggctggaagggacaaccttaattgggctagggctttggcctatttttctgacttggtcttgggccctaatggtttgactatagtggcagcttgtgggcttattctgttctggatccgaatttgggatcccagcggatttcttataaaaatttgggatccagaagagaaagaacgagagattcgactattggtggcaggaacatataatgacttggttttgtgctgcaaaagctacagaacctacgaggaggatggggagatttactccatccgtaatccttactacatctgtaatccatatatcaagcagtgggttgctcttcctccgaaccatctcagagtccccttcggctgtggaacacttgtgggattcatctgtgaaccatactttaggtactctgcagatggcaaagaagaacaaactagtagtatcacccttaatgccgagtataggtggagtgttgtgcaaatggtaatttgttttatatcatcaacgcttgaattacatatggagatcttctcttccgagactcgacagtggaagcaattggttgtacaatgcccaccaagctttatatgtttgggtgctggttcggaggtcgttgcttacaatggaatgttgtattggttgttaggtgctaataataatatttttgatttggatccaatgttcagtagtgatgttattgatcaatgccgttttggtatcaacagcaccataaatacatacatgtgtctaggtgtttgcggcggacgtctgcggatgtgccagagggattttgtaggtaagcaggattttgtaggtaaccgtcacctaagtgtttgggagtggaaagaagaggtggatgacaatggatgcaagatgcaaaaatggtgcttgatagttgaccgtctttctatcgaccagctggttttaaaatatcctttgatctctgaaaataaattgccgtactgtaggaggtttcaggtgctaagttttcacccatacaatgaggatgcggtgtttttcgagactgagcacccaaattgcattgctctgtgcaatatgcgcgaaagaaccctagagatagtttcagaatttgatcctaagatcaatttggaaagttggtttcgctctgcgtgtttgggacgcagaaacctctacccatttgtgatcccgtggttgcctactcctgttcctaaactctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

579

Amino Acids

65.26

Weight (kDa)

7.9

Isoelectric Point (pI)

43.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018767)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47695
rosa_chinensis RchiOBHm_Chr5g0018111
rosa_laevigata RLG00000032321 RLG00000032322
rosa_multiflora Rmu_sc0010280.1_g000022 Rmu_sc0013814.1_g000004
rosa_roxburghii Rroxscaffold_1G00069250
rosa_samantha Rh5CG143900 Rh5DG133700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 695
AatII GACGTC 1 cut(s) 1309
AccII CGCG 1 cut(s) 1602
AcsI RAATTY 4 cut(s) 160, 669, 699, 1628
AcyI GRCGYC 1 cut(s) 1306
AfaI GTAC 5 cut(s) 91, 454, 947, 1107, 1502
AfiI CCNNNNNNNGG 6 cut(s) 49, 227, 333, 574, 673, 1002
AflIII ACRYGT 1 cut(s) 1281
AgsI TTSAA 1 cut(s) 1052
AhlI ACTAGT 1 cut(s) 974
AjuI GAANNNNNNNTTGG 2 cut(s) 1159, 1191
AleI CACNNNNGTG 1 cut(s) 1368
AloI GAACNNNNNNTCC 2 cut(s) 1205, 1237
AluBI AGCT 5 cut(s) 20, 641, 783, 1122, 1459
AluI AGCT 5 cut(s) 20, 641, 783, 1122, 1459
Alw21I GWGCWC 2 cut(s) 22, 1572
Alw26I GTCTC 3 cut(s) 485, 1073, 1556
Ama87I CYCGRG 1 cut(s) 48
AoxI GGCC 4 cut(s) 56, 245, 588, 613
ApaI GGGCCC 1 cut(s) 617
ApeKI GCWGC 2 cut(s) 638, 774
ApoI RAATTY 4 cut(s) 160, 669, 699, 1628
AspLEI GCGC 2 cut(s) 42, 1602
AspS9I GGNCC 2 cut(s) 613, 614
AsuC2I CCSGG 1 cut(s) 132
AsuHPI GGTGA 3 cut(s) 976, 1355, 1523
AvaI CYCGRG 1 cut(s) 48
BaeGI GKGCMC 2 cut(s) 205, 617
BaeI ACNNNNGTAYC 2 cut(s) 444, 477
BamHI GGATCC 4 cut(s) 663, 676, 706, 1213
BanII GRGCYC 2 cut(s) 22, 617
BbsI GAAGAC 3 cut(s) 96, 139, 295
Bbv12I GWGCWC 2 cut(s) 22, 1572
BbvI GCAGC 2 cut(s) 650, 761
BccI CCATC 9 cut(s) 187, 221, 310, 337, 398, 797, 827, 891, 950
BceAI ACGGC 3 cut(s) 541, 1233, 1483
BclI TGATCA 1 cut(s) 1240
BcnI CCSGG 1 cut(s) 132
BcoDI GTCTC 3 cut(s) 485, 1073, 1556
BcuI ACTAGT 1 cut(s) 974
BfaI CTAG 8 cut(s) 6, 12, 26, 579, 975, 1289, 1613, 1738
BfmI CTRYAG 5 cut(s) 287, 630, 784, 951, 1504
BfoI RGCGCY 1 cut(s) 43
BglI GCCNNNNNGGC 2 cut(s) 179, 253
BglII AGATCT 3 cut(s) 8, 467, 1065
BisI GCNGC 7 cut(s) 43, 254, 375, 520, 639, 775, 1300
BlsI GCNGC 7 cut(s) 44, 255, 376, 521, 640, 776, 1301
Bme1390I CCNGG 1 cut(s) 132
BmeT110I CYCGRG 1 cut(s) 48
BmgT120I GGNCC 2 cut(s) 613, 614
BmiI GGNNCC 7 cut(s) 117, 477, 615, 665, 678, 708, 1215
BmrFI CCNGG 1 cut(s) 132
BmsI GCATC 4 cut(s) 432, 1397, 1404, 1537
BpiI GAAGAC 3 cut(s) 96, 139, 295
BplI GAGNNNNNCTC 4 cut(s) 800, 832, 1055, 1087
BpuMI CCSGG 1 cut(s) 132
BsaBI GATNNNNATC 1 cut(s) 1212
BsaHI GRCGYC 1 cut(s) 1306
BsaI GGTCTC 1 cut(s) 485
BsaJI CCNNGG 5 cut(s) 47, 248, 361, 479, 1709
BsaWI WCCGGW 1 cut(s) 494
BsaXI ACNNNNNCTCC 2 cut(s) 489, 519
Bsc4I CCNNNNNNNGG 6 cut(s) 49, 227, 333, 574, 673, 1002
Bse3DI GCAATG 1 cut(s) 1581
Bse8I GATNNNNATC 1 cut(s) 1212
BseDI CCNNGG 5 cut(s) 47, 248, 361, 479, 1709
BseGI GGATG 8 cut(s) 421, 423, 808, 819, 1320, 1402, 1412, 1552
BseJI GATNNNNATC 1 cut(s) 1212
BseLI CCNNNNNNNGG 6 cut(s) 49, 227, 333, 574, 673, 1002
BseMI GCAATG 1 cut(s) 1581
BseMII CTCAG 2 cut(s) 901, 1557
BseRI GAGGAG 1 cut(s) 812
BseSI GKGCMC 2 cut(s) 205, 617
BseXI GCAGC 2 cut(s) 650, 761
BseYI CCCAGC 1 cut(s) 680
BsgI GTGCAG 2 cut(s) 49, 505
Bsh1236I CGCG 1 cut(s) 1602
BshFI GGCC 4 cut(s) 58, 247, 590, 615
BsiHKAI GWGCWC 2 cut(s) 22, 1572
BsiHKCI CYCGRG 1 cut(s) 48
BsiSI CCGG 2 cut(s) 132, 495
BslFI GGGAC 4 cut(s) 343, 575, 878, 1692
BslI CCNNNNNNNGG 6 cut(s) 49, 227, 333, 574, 673, 1002
BsmAI GTCTC 3 cut(s) 485, 1073, 1556
BsmFI GGGAC 4 cut(s) 343, 575, 878, 1692
BsnI GGCC 4 cut(s) 58, 247, 590, 615
Bso31I GGTCTC 1 cut(s) 485
BsoBI CYCGRG 1 cut(s) 48
Bsp120I GGGCCC 1 cut(s) 613
Bsp1286I GDGCHC 4 cut(s) 22, 205, 617, 1572
Bsp1407I TGTACA 1 cut(s) 1105
BspANI GGCC 4 cut(s) 58, 247, 590, 615
BspCNI CTCAG 2 cut(s) 900, 1558
BspFNI CGCG 1 cut(s) 1602
BspLI GGNNCC 7 cut(s) 117, 477, 615, 665, 678, 708, 1215
BspMAI CTGCAG 1 cut(s) 955
BspQI GCTCTTC 1 cut(s) 876
BspTNI GGTCTC 1 cut(s) 485
BsrDI GCAATG 1 cut(s) 1581
BsrGI TGTACA 1 cut(s) 1105
BssECI CCNNGG 5 cut(s) 47, 248, 361, 479, 1709
BssNI GRCGYC 1 cut(s) 1306
BssT1I CCWWGG 2 cut(s) 248, 361
Bst4CI ACNGT 7 cut(s) 100, 143, 412, 1089, 1361, 1442, 1505
Bst6I CTCTTC 4 cut(s) 708, 876, 1078, 1383
BstACI GRCGYC 1 cut(s) 1306
BstAUI TGTACA 1 cut(s) 1105
BstC8I GCNNGC 2 cut(s) 239, 258
BstDEI CTNAG 5 cut(s) 887, 1367, 1523, 1566, 1638
BstDSI CCRYGG 2 cut(s) 479, 1709
BstEII GGTNACC 1 cut(s) 1355
BstF5I GGATG 8 cut(s) 421, 423, 808, 819, 1320, 1402, 1412, 1552
BstFNI CGCG 1 cut(s) 1602
BstH2I RGCGCY 1 cut(s) 43
BstHHI GCGC 2 cut(s) 42, 1602
BstMAI GTCTC 3 cut(s) 485, 1073, 1556
BstMWI GCNNNNNNNGC 7 cut(s) 179, 253, 262, 525, 780, 1119, 1599
BstNSI RCATGY 1 cut(s) 1285
BstPI GGTNACC 1 cut(s) 1355
BstSCI CCNGG 1 cut(s) 130
BstSFI CTRYAG 5 cut(s) 287, 630, 784, 951, 1504
BstSLI GKGCMC 2 cut(s) 205, 617
BstUI CGCG 1 cut(s) 1602
BstV1I GCAGC 2 cut(s) 650, 761
BstV2I GAAGAC 3 cut(s) 96, 139, 295
BstX2I RGATCY 7 cut(s) 8, 467, 663, 676, 706, 1065, 1213
BstYI RGATCY 7 cut(s) 8, 467, 663, 676, 706, 1065, 1213
BsuRI GGCC 4 cut(s) 58, 247, 590, 615
BtgI CCRYGG 2 cut(s) 479, 1709
BtsCI GGATG 8 cut(s) 421, 423, 808, 819, 1320, 1402, 1412, 1552
BtsI GCAGTG 1 cut(s) 866
BtsIMutI CAGTG 3 cut(s) 148, 866, 1094
Cac8I GCNNGC 2 cut(s) 239, 258
CfoI GCGC 2 cut(s) 42, 1602
Cfr13I GGNCC 2 cut(s) 613, 614
CseI GACGC 2 cut(s) 346, 1689
Csp6I GTAC 5 cut(s) 90, 453, 946, 1106, 1501
CviAII CATG 2 cut(s) 502, 1282
CviQI GTAC 5 cut(s) 90, 453, 946, 1106, 1501
DdeI CTNAG 5 cut(s) 887, 1367, 1523, 1566, 1638
DraI TTTAAA 1 cut(s) 1467
Eam1104I CTCTTC 4 cut(s) 708, 876, 1078, 1383
EarI CTCTTC 4 cut(s) 708, 876, 1078, 1383
EciI GGCGGA 2 cut(s) 308, 1317
Ecl136II GAGCTC 1 cut(s) 20
Eco130I CCWWGG 2 cut(s) 248, 361
Eco24I GRGCYC 2 cut(s) 22, 617
Eco31I GGTCTC 1 cut(s) 485
Eco53kI GAGCTC 1 cut(s) 20
Eco88I CYCGRG 1 cut(s) 48
Eco91I GGTNACC 1 cut(s) 1355
EcoICRI GAGCTC 1 cut(s) 20
EcoO109I RGGNCCY 1 cut(s) 614
EcoO65I GGTNACC 1 cut(s) 1355
EcoT14I CCWWGG 2 cut(s) 248, 361
EcoT38I GRGCYC 2 cut(s) 22, 617
ErhI CCWWGG 2 cut(s) 248, 361
FaeI CATG 2 cut(s) 505, 1285
FaqI GGGAC 4 cut(s) 343, 575, 878, 1692
FatI CATG 2 cut(s) 501, 1281
FauI CCCGC 1 cut(s) 249
FauNDI CATATG 1 cut(s) 1059
FbaI TGATCA 1 cut(s) 1240
Fnu4HI GCNGC 7 cut(s) 43, 254, 375, 520, 639, 775, 1300
FokI GGATG 8 cut(s) 410, 428, 806, 815, 1327, 1409, 1419, 1559
FriOI GRGCYC 2 cut(s) 22, 617
Fsp4HI GCNGC 7 cut(s) 43, 254, 375, 520, 639, 775, 1300
FspBI CTAG 8 cut(s) 6, 12, 26, 579, 975, 1289, 1613, 1738
GlaI GCGC 2 cut(s) 41, 1601
GluI GCNGC 7 cut(s) 43, 254, 375, 520, 639, 775, 1300
GsaI CCCAGC 1 cut(s) 684
HaeII RGCGCY 1 cut(s) 43
HaeIII GGCC 4 cut(s) 58, 247, 590, 615
HapII CCGG 2 cut(s) 132, 495
HgaI GACGC 2 cut(s) 346, 1689
HhaI GCGC 2 cut(s) 42, 1602
Hin1I GRCGYC 1 cut(s) 1306
Hin1II CATG 2 cut(s) 505, 1285
Hin6I GCGC 2 cut(s) 40, 1600
HinP1I GCGC 2 cut(s) 40, 1600
HincII GTYRAC 1 cut(s) 1438
HindII GTYRAC 1 cut(s) 1438
HindIII AAGCTT 1 cut(s) 1120
HinfI GANTC 4 cut(s) 730, 891, 921, 1081
HpaII CCGG 2 cut(s) 132, 495
HphI GGTGA 3 cut(s) 976, 1355, 1523
Hpy166II GTNNAC 2 cut(s) 932, 1438
Hpy188I TCNGA 9 cut(s) 211, 601, 668, 879, 890, 1078, 1147, 1486, 1627
Hpy188III TCNNGA 6 cut(s) 6, 126, 463, 661, 710, 1561
Hpy8I GTNNAC 2 cut(s) 932, 1438
Hpy99I CGWCG 1 cut(s) 527
HpyAV CCTTC 2 cut(s) 552, 907
HpyCH4III ACNGT 7 cut(s) 100, 143, 412, 1089, 1361, 1442, 1505
HpyCH4IV ACGT 1 cut(s) 1306
HpyCH4V TGCA 9 cut(s) 66, 486, 777, 953, 1018, 1410, 1417, 1581, 1593
HpyF10VI GCNNNNNNNGC 7 cut(s) 179, 253, 262, 525, 780, 1119, 1599
HpyF3I CTNAG 5 cut(s) 887, 1367, 1523, 1566, 1638
HpySE526I ACGT 1 cut(s) 1306
Hsp92I GRCGYC 1 cut(s) 1306
Hsp92II CATG 2 cut(s) 505, 1285
HspAI GCGC 2 cut(s) 40, 1600
Ksp22I TGATCA 1 cut(s) 1240
LguI GCTCTTC 1 cut(s) 876
Lsp1109I GCAGC 2 cut(s) 650, 761
LweI GCATC 4 cut(s) 432, 1397, 1404, 1537
MaeI CTAG 8 cut(s) 6, 12, 26, 579, 975, 1289, 1613, 1738
MaeII ACGT 1 cut(s) 1306
MaeIII GTNAC 3 cut(s) 319, 1355, 1361
MboII GAAGA 9 cut(s) 96, 139, 295, 725, 863, 977, 1060, 1065, 1400
MfeI CAATTG 1 cut(s) 1097
MflI RGATCY 7 cut(s) 8, 467, 663, 676, 706, 1065, 1213
MhlI GDGCHC 4 cut(s) 22, 205, 617, 1572
MlyI GAGTC 2 cut(s) 900, 1075
MseI TTAA 3 cut(s) 570, 990, 1466
MslI CAYNNNNRTG 2 cut(s) 1282, 1368
MspA1I CMGCKG 2 cut(s) 684, 1459
MspI CCGG 2 cut(s) 132, 495
MspR9I CCNGG 1 cut(s) 132
MunI CAATTG 1 cut(s) 1097
MvnI CGCG 1 cut(s) 1602
MwoI GCNNNNNNNGC 7 cut(s) 179, 253, 262, 525, 780, 1119, 1599
NciI CCSGG 1 cut(s) 132
NdeI CATATG 1 cut(s) 1059
NlaIII CATG 2 cut(s) 505, 1285
NlaIV GGNNCC 7 cut(s) 117, 477, 615, 665, 678, 708, 1215
NmeAIII GCCGAG 1 cut(s) 1021
NmuCI GTSAC 1 cut(s) 1361
NspI RCATGY 1 cut(s) 1285
OliI CACNNNNGTG 1 cut(s) 1368
PciI ACATGT 1 cut(s) 1281
PciSI GCTCTTC 1 cut(s) 876
PcsI WCGNNNNNNNCGW 2 cut(s) 162, 730
PfeI GAWTC 2 cut(s) 730, 921
PflFI GACNNNGTC 1 cut(s) 605
PkrI GCNGC 7 cut(s) 44, 255, 376, 521, 640, 776, 1301
PleI GAGTC 2 cut(s) 899, 1075
PpsI GAGTC 2 cut(s) 899, 1075
PscI ACATGT 1 cut(s) 1281
PsiI TTATAA 1 cut(s) 695
Psp124BI GAGCTC 1 cut(s) 22
PspEI GGTNACC 1 cut(s) 1355
PspFI CCCAGC 1 cut(s) 680
PspN4I GGNNCC 7 cut(s) 117, 477, 615, 665, 678, 708, 1215
PspOMI GGGCCC 1 cut(s) 613
PspPI GGNCC 2 cut(s) 613, 614
PstI CTGCAG 1 cut(s) 955
PsuI RGATCY 7 cut(s) 8, 467, 663, 676, 706, 1065, 1213
PsyI GACNNNGTC 1 cut(s) 605
PvuII CAGCTG 1 cut(s) 1459
RsaI GTAC 5 cut(s) 91, 454, 947, 1107, 1502
RsaNI GTAC 5 cut(s) 90, 453, 946, 1106, 1501
RseI CAYNNNNRTG 2 cut(s) 1282, 1368
SacI GAGCTC 1 cut(s) 22
SapI GCTCTTC 1 cut(s) 876
SaqAI TTAA 3 cut(s) 570, 990, 1466
SatI GCNGC 7 cut(s) 43, 254, 375, 520, 639, 775, 1300
Sau96I GGNCC 2 cut(s) 613, 614
SchI GAGTC 2 cut(s) 900, 1075
ScrFI CCNGG 1 cut(s) 132
SduI GDGCHC 4 cut(s) 22, 205, 617, 1572
SfaNI GCATC 4 cut(s) 432, 1397, 1404, 1537
SfcI CTRYAG 5 cut(s) 287, 630, 784, 951, 1504
SmiMI CAYNNNNRTG 2 cut(s) 1282, 1368
SpeI ACTAGT 1 cut(s) 974
SspI AATATT 1 cut(s) 1201
SspMI CTAG 8 cut(s) 6, 12, 26, 579, 975, 1289, 1613, 1738
SstI GAGCTC 1 cut(s) 22
StyD4I CCNGG 1 cut(s) 130
StyI CCWWGG 2 cut(s) 248, 361
TaaI ACNGT 7 cut(s) 100, 143, 412, 1089, 1361, 1442, 1505
TaiI ACGT 1 cut(s) 1309
TaqI TCGA 5 cut(s) 332, 733, 1084, 1452, 1560
TatI WGTACW 2 cut(s) 89, 1105
TauI GCSGC 5 cut(s) 45, 256, 377, 522, 1302
TfiI GAWTC 2 cut(s) 730, 921
Tru1I TTAA 3 cut(s) 570, 990, 1466
Tru9I TTAA 3 cut(s) 570, 990, 1466
TscAI CASTG 3 cut(s) 148, 866, 1094
TseFI GTSAC 1 cut(s) 1361
TseI GCWGC 2 cut(s) 638, 774
Tsp45I GTSAC 1 cut(s) 1361
TspDTI ATGAA 1 cut(s) 913
TspGWI ACGGA 4 cut(s) 65, 154, 468, 812
TspRI CASTG 3 cut(s) 148, 866, 1094
Tth111I GACNNNGTC 1 cut(s) 605
XapI RAATTY 4 cut(s) 160, 669, 699, 1628
XbaI TCTAGA 1 cut(s) 5
XceI RCATGY 1 cut(s) 1285
XspI CTAG 8 cut(s) 6, 12, 26, 579, 975, 1289, 1613, 1738
ZraI GACGTC 1 cut(s) 1307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.