Rmu_sc0010280.1_g000022

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010280.1
OG0018767
Physical Location & Seq
Forward (+)
96790 .. 98179
1390 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010280.1_g000022.1.cds

Sequence Viewer

Length: 1323 bp
atgagtaccggcattcccttaagctctgtggttaatgcgcttggcttggccacaactacccgaattgatgatctccccaactttatattggcggaaatccttgctcgacttcctcggaaaaaaacaatatttcgagccaagtgtgtgtccaggcgttggttgagtctcctctcagacccttattttgttaggacctttttaagtctccaaggcgttgatgaaggaaatgcatttataggtgcaggtattcttgttgttttgcccttccctaagaataaactcagacccaaacttgaagtccatgcgcatccggtagtcaaaacaaaagaaagccatttctctctggatttcctcccatgttttcaagaagagaaagaacgagaggttcgactattggtggcaggaacatataatgacttggttttgtgctgcaaaagctacagaacctacgaggaggatggggagatttactccatccgtaatccttactacatctgtaatccatatacgaagcagtgggttgctcttcctccaaaccatctcagagtccccttcggctgtggaacacttgtgggattcatctgtgaaccatactttaggtactctgcagatggcaaagaagaacaaactagtagtaccacccttaatgccgagtataggtggagtgttgtgcaaatgtggaagcaattggttgtacaatgcccaccaagctttatatgtttgggtcctggttcggaggtcgttgcttacaatggaatgttgtattggttgttaggtgctaataataatattgttgatttggatccaatgttcagtagtgatgttattgatcaatgccgttttggtataaacggcaccatatatacatacatgtgtctaggtgtttgcggcggacgtctgcggatgtgccagagggattttgtaggtaaccgtcacctaagtgtttgggagtggaaagaagaggtggatgacaatggatgtaagatgcaaaaatggtgcttgatagttgaccgtctttccatcaaccagctggttttaaaatatcctttgatctctgaaaataaattgccgtatggtaggaagtttcaggtgctaggttttcacccatacaatgaggatgcggtgtttttggagactgagcacccaaattgcatcgctctgtgcaatatgcgcgaaagaaccctagagatggtttcagaatttgatcctaagatcaatttggaaagctggtttggaagttggtttcgctctgcgtgtttgggaagcagaaacgtctacccatatgtgatcccgtggttgcctacacctgtccctaaactctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

440

Amino Acids

50.48

Weight (kDa)

7.78

Isoelectric Point (pI)

35.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018767)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47695
rosa_chinensis RchiOBHm_Chr5g0018111
rosa_laevigata RLG00000032321 RLG00000032322
rosa_multiflora Rmu_sc0010280.1_g000022 Rmu_sc0013814.1_g000004
rosa_roxburghii Rroxscaffold_1G00069250
rosa_samantha Rh5CG143900 Rh5DG133700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 898
Acc16I TGCGCA 1 cut(s) 306
Acc36I ACCTGC 1 cut(s) 233
AccB1I GGYRCC 1 cut(s) 854
AccB7I CCANNNNNTGG 1 cut(s) 156
AccI GTMKAC 1 cut(s) 1275
AccII CGCG 1 cut(s) 1173
AciI CCGC 5 cut(s) 92, 888, 891, 901, 1121
AclWI GGATC 4 cut(s) 797, 810, 1199, 1282
AcoI YGGCCR 1 cut(s) 48
AcsI RAATTY 1 cut(s) 1199
AcyI GRCGYC 1 cut(s) 895
AfaI GTAC 4 cut(s) 7, 602, 637, 696
AfiI CCNNNNNNNGG 3 cut(s) 156, 657, 1189
AflII CTTAAG 1 cut(s) 19
AflIII ACRYGT 1 cut(s) 870
AgsI TTSAA 2 cut(s) 296, 365
AhlI ACTAGT 1 cut(s) 629
AjnI CCWGG 2 cut(s) 149, 727
AjuI GAANNNNNNNTTGG 4 cut(s) 748, 780, 1215, 1247
AleI CACNNNNGTG 1 cut(s) 939
AloI GAACNNNNNNTCC 2 cut(s) 794, 826
AluBI AGCT 5 cut(s) 24, 438, 711, 1030, 1227
AluI AGCT 5 cut(s) 24, 438, 711, 1030, 1227
Alw21I GWGCWC 1 cut(s) 1143
Alw26I GTCTC 3 cut(s) 170, 209, 1127
AlwI GGATC 4 cut(s) 797, 810, 1199, 1282
AoxI GGCC 1 cut(s) 48
ApeKI GCWGC 1 cut(s) 429
ApoI RAATTY 1 cut(s) 1199
ArsI GACNNNNNNTTYG 4 cut(s) 167, 199, 282, 314
AspLEI GCGC 3 cut(s) 40, 307, 1173
AspS9I GGNCC 2 cut(s) 192, 725
AsuHPI GGTGA 2 cut(s) 926, 1094
AvaII GGWCC 2 cut(s) 192, 725
BalI TGGCCA 1 cut(s) 50
BamHI GGATCC 1 cut(s) 802
BanI GGYRCC 1 cut(s) 854
Bbv12I GWGCWC 1 cut(s) 1143
BbvI GCAGC 1 cut(s) 416
BccI CCATC 6 cut(s) 452, 482, 546, 605, 1028, 1183
BceAI ACGGC 3 cut(s) 822, 868, 1054
BciT130I CCWGG 2 cut(s) 151, 729
BclI TGATCA 1 cut(s) 829
BcoDI GTCTC 3 cut(s) 170, 209, 1127
BcuI ACTAGT 1 cut(s) 629
BfaI CTAG 5 cut(s) 630, 878, 1094, 1184, 1321
BfmI CTRYAG 2 cut(s) 439, 606
BfrI CTTAAG 1 cut(s) 19
BfuAI ACCTGC 1 cut(s) 233
BisI GCNGC 2 cut(s) 430, 889
BlsI GCNGC 2 cut(s) 431, 890
Bme1390I CCNGG 2 cut(s) 151, 729
Bme18I GGWCC 2 cut(s) 192, 725
BmgT120I GGNCC 2 cut(s) 192, 725
BmiI GGNNCC 3 cut(s) 726, 804, 856
BmrFI CCNGG 2 cut(s) 151, 729
BmsI GCATC 4 cut(s) 316, 975, 1108, 1161
BplI GAGNNNNNCTC 2 cut(s) 455, 487
BsaBI GATNNNNATC 1 cut(s) 801
BsaHI GRCGYC 1 cut(s) 895
BsaJI CCNNGG 3 cut(s) 113, 208, 1292
BsaWI WCCGGW 1 cut(s) 310
Bsc4I CCNNNNNNNGG 3 cut(s) 156, 657, 1189
Bse118I RCCGGY 1 cut(s) 8
Bse8I GATNNNNATC 1 cut(s) 801
BseBI CCWGG 2 cut(s) 151, 729
BseDI CCNNGG 3 cut(s) 113, 208, 1292
BseGI GGATG 7 cut(s) 307, 463, 474, 909, 973, 983, 1123
BseJI GATNNNNATC 1 cut(s) 801
BseLI CCNNNNNNNGG 3 cut(s) 156, 657, 1189
BseMII CTCAG 4 cut(s) 186, 295, 556, 1128
BseRI GAGGAG 2 cut(s) 158, 467
BseXI GCAGC 1 cut(s) 416
BsgI GTGCAG 1 cut(s) 261
Bsh1236I CGCG 1 cut(s) 1173
BshFI GGCC 1 cut(s) 50
BshNI GGYRCC 1 cut(s) 854
BsiHKAI GWGCWC 1 cut(s) 1143
BsiSI CCGG 2 cut(s) 9, 311
BslFI GGGAC 2 cut(s) 533, 1295
BslI CCNNNNNNNGG 3 cut(s) 156, 657, 1189
BsmAI GTCTC 3 cut(s) 170, 209, 1127
BsmFI GGGAC 2 cut(s) 533, 1295
BsmI GAATGC 1 cut(s) 12
BsnI GGCC 1 cut(s) 50
Bsp1286I GDGCHC 1 cut(s) 1143
Bsp1407I TGTACA 1 cut(s) 694
Bsp143I GATC 7 cut(s) 70, 802, 829, 1050, 1204, 1212, 1287
BspACI CCGC 5 cut(s) 92, 888, 891, 901, 1121
BspANI GGCC 1 cut(s) 50
BspCNI CTCAG 4 cut(s) 185, 294, 555, 1129
BspFNI CGCG 1 cut(s) 1173
BspLI GGNNCC 3 cut(s) 726, 804, 856
BspMAI CTGCAG 1 cut(s) 610
BspMI ACCTGC 1 cut(s) 233
BspPI GGATC 4 cut(s) 797, 810, 1199, 1282
BspQI GCTCTTC 1 cut(s) 531
BspT107I GGYRCC 1 cut(s) 854
BspTI CTTAAG 1 cut(s) 19
BsrFI RCCGGY 1 cut(s) 8
BsrGI TGTACA 1 cut(s) 694
BssAI RCCGGY 1 cut(s) 8
BssECI CCNNGG 3 cut(s) 113, 208, 1292
BssMI GATC 7 cut(s) 70, 802, 829, 1050, 1204, 1212, 1287
BssNI GRCGYC 1 cut(s) 895
BssT1I CCWWGG 1 cut(s) 208
Bst2UI CCWGG 2 cut(s) 151, 729
Bst4CI ACNGT 2 cut(s) 932, 1013
Bst6I CTCTTC 3 cut(s) 363, 531, 954
BstACI GRCGYC 1 cut(s) 895
BstAFI CTTAAG 1 cut(s) 19
BstAUI TGTACA 1 cut(s) 694
BstDEI CTNAG 7 cut(s) 172, 270, 281, 542, 938, 1137, 1209
BstDSI CCRYGG 1 cut(s) 1292
BstEII GGTNACC 1 cut(s) 926
BstF5I GGATG 7 cut(s) 307, 463, 474, 909, 973, 983, 1123
BstFNI CGCG 1 cut(s) 1173
BstHHI GCGC 3 cut(s) 40, 307, 1173
BstKTI GATC 7 cut(s) 73, 805, 832, 1053, 1207, 1215, 1290
BstMAI GTCTC 3 cut(s) 170, 209, 1127
BstMBI GATC 7 cut(s) 70, 802, 829, 1050, 1204, 1212, 1287
BstMWI GCNNNNNNNGC 3 cut(s) 435, 708, 1170
BstNI CCWGG 2 cut(s) 151, 729
BstNSI RCATGY 1 cut(s) 874
BstPI GGTNACC 1 cut(s) 926
BstSCI CCNGG 2 cut(s) 149, 727
BstSFI CTRYAG 2 cut(s) 439, 606
BstUI CGCG 1 cut(s) 1173
BstV1I GCAGC 1 cut(s) 416
BstX2I RGATCY 1 cut(s) 802
BstYI RGATCY 1 cut(s) 802
BsuRI GGCC 1 cut(s) 50
BtgI CCRYGG 1 cut(s) 1292
BtgZI GCGATG 1 cut(s) 1138
BtsCI GGATG 7 cut(s) 307, 463, 474, 909, 973, 983, 1123
BtsI GCAGTG 1 cut(s) 521
BtsIMutI CAGTG 1 cut(s) 521
BveI ACCTGC 1 cut(s) 233
CfoI GCGC 3 cut(s) 40, 307, 1173
Cfr10I RCCGGY 1 cut(s) 8
Cfr13I GGNCC 2 cut(s) 192, 725
Csp6I GTAC 4 cut(s) 6, 601, 636, 695
CviAII CATG 3 cut(s) 302, 357, 871
CviQI GTAC 4 cut(s) 6, 601, 636, 695
DdeI CTNAG 7 cut(s) 172, 270, 281, 542, 938, 1137, 1209
DpnI GATC 7 cut(s) 72, 804, 831, 1052, 1206, 1214, 1289
DpnII GATC 7 cut(s) 70, 802, 829, 1050, 1204, 1212, 1287
DraI TTTAAA 1 cut(s) 1038
EaeI YGGCCR 1 cut(s) 48
Eam1104I CTCTTC 3 cut(s) 363, 531, 954
EarI CTCTTC 3 cut(s) 363, 531, 954
EciI GGCGGA 2 cut(s) 107, 906
Eco130I CCWWGG 1 cut(s) 208
Eco47I GGWCC 2 cut(s) 192, 725
Eco91I GGTNACC 1 cut(s) 926
EcoO109I RGGNCCY 2 cut(s) 192, 725
EcoO65I GGTNACC 1 cut(s) 926
EcoRII CCWGG 2 cut(s) 149, 727
EcoT14I CCWWGG 1 cut(s) 208
EcoT22I ATGCAT 1 cut(s) 232
ErhI CCWWGG 1 cut(s) 208
FaeI CATG 3 cut(s) 305, 360, 874
FaqI GGGAC 2 cut(s) 533, 1295
FatI CATG 3 cut(s) 301, 356, 870
FauNDI CATATG 1 cut(s) 1282
FbaI TGATCA 1 cut(s) 829
FblI GTMKAC 1 cut(s) 1275
Fnu4HI GCNGC 2 cut(s) 430, 889
FokI GGATG 7 cut(s) 294, 461, 470, 916, 980, 990, 1130
Fsp4HI GCNGC 2 cut(s) 430, 889
FspAI RTGCGCAY 1 cut(s) 306
FspBI CTAG 5 cut(s) 630, 878, 1094, 1184, 1321
FspI TGCGCA 1 cut(s) 306
GlaI GCGC 3 cut(s) 39, 306, 1172
GluI GCNGC 2 cut(s) 430, 889
HaeIII GGCC 1 cut(s) 50
HapII CCGG 2 cut(s) 9, 311
HhaI GCGC 3 cut(s) 40, 307, 1173
Hin1I GRCGYC 1 cut(s) 895
Hin1II CATG 3 cut(s) 305, 360, 874
Hin6I GCGC 3 cut(s) 38, 305, 1171
HinP1I GCGC 3 cut(s) 38, 305, 1171
HincII GTYRAC 1 cut(s) 1009
HindII GTYRAC 1 cut(s) 1009
HindIII AAGCTT 1 cut(s) 709
HinfI GANTC 3 cut(s) 163, 546, 576
HpaII CCGG 2 cut(s) 9, 311
HphI GGTGA 2 cut(s) 926, 1094
Hpy166II GTNNAC 3 cut(s) 587, 1009, 1276
Hpy188I TCNGA 7 cut(s) 117, 175, 284, 545, 736, 1057, 1198
Hpy188III TCNNGA 2 cut(s) 344, 365
Hpy8I GTNNAC 3 cut(s) 587, 1009, 1276
HpyAV CCTTC 3 cut(s) 215, 274, 562
HpyCH4III ACNGT 2 cut(s) 932, 1013
HpyCH4IV ACGT 2 cut(s) 895, 1272
HpyCH4V TGCA 8 cut(s) 230, 242, 432, 608, 673, 988, 1152, 1164
HpyF10VI GCNNNNNNNGC 3 cut(s) 435, 708, 1170
HpyF3I CTNAG 7 cut(s) 172, 270, 281, 542, 938, 1137, 1209
HpySE526I ACGT 2 cut(s) 895, 1272
Hsp92I GRCGYC 1 cut(s) 895
Hsp92II CATG 3 cut(s) 305, 360, 874
HspAI GCGC 3 cut(s) 38, 305, 1171
Ksp22I TGATCA 1 cut(s) 829
Kzo9I GATC 7 cut(s) 70, 802, 829, 1050, 1204, 1212, 1287
LguI GCTCTTC 1 cut(s) 531
Lsp1109I GCAGC 1 cut(s) 416
LweI GCATC 4 cut(s) 316, 975, 1108, 1161
MaeI CTAG 5 cut(s) 630, 878, 1094, 1184, 1321
MaeII ACGT 2 cut(s) 895, 1272
MaeIII GTNAC 2 cut(s) 926, 932
MalI GATC 7 cut(s) 72, 804, 831, 1052, 1206, 1214, 1289
MboI GATC 7 cut(s) 70, 802, 829, 1050, 1204, 1212, 1287
MboII GAAGA 4 cut(s) 380, 518, 632, 971
MfeI CAATTG 1 cut(s) 686
MflI RGATCY 1 cut(s) 802
MhlI GDGCHC 1 cut(s) 1143
MlsI TGGCCA 1 cut(s) 50
MluCI AATT 6 cut(s) 63, 686, 1064, 1147, 1199, 1216
MluNI TGGCCA 1 cut(s) 50
MlyI GAGTC 2 cut(s) 172, 555
Mox20I TGGCCA 1 cut(s) 50
Mph1103I ATGCAT 1 cut(s) 232
MscI TGGCCA 1 cut(s) 50
MseI TTAA 5 cut(s) 20, 33, 200, 645, 1037
MslI CAYNNNNRTG 2 cut(s) 871, 939
Msp20I TGGCCA 1 cut(s) 50
MspA1I CMGCKG 1 cut(s) 1030
MspCI CTTAAG 1 cut(s) 19
MspI CCGG 2 cut(s) 9, 311
MspR9I CCNGG 2 cut(s) 151, 729
MunI CAATTG 1 cut(s) 686
Mva1269I GAATGC 1 cut(s) 12
MvaI CCWGG 2 cut(s) 151, 729
MvnI CGCG 1 cut(s) 1173
MwoI GCNNNNNNNGC 3 cut(s) 435, 708, 1170
NdeI CATATG 1 cut(s) 1282
NdeII GATC 7 cut(s) 70, 802, 829, 1050, 1204, 1212, 1287
NlaIII CATG 3 cut(s) 305, 360, 874
NlaIV GGNNCC 3 cut(s) 726, 804, 856
NmeAIII GCCGAG 1 cut(s) 676
NmuCI GTSAC 1 cut(s) 932
NsbI TGCGCA 1 cut(s) 306
NsiI ATGCAT 1 cut(s) 232
NspI RCATGY 1 cut(s) 874
OliI CACNNNNGTG 1 cut(s) 939
PciI ACATGT 1 cut(s) 870
PciSI GCTCTTC 1 cut(s) 531
PcsI WCGNNNNNNNCGW 1 cut(s) 385
PctI GAATGC 1 cut(s) 12
PfeI GAWTC 1 cut(s) 576
PflMI CCANNNNNTGG 1 cut(s) 156
PkrI GCNGC 2 cut(s) 431, 890
PleI GAGTC 2 cut(s) 171, 554
PpsI GAGTC 2 cut(s) 171, 554
PpuMI RGGWCCY 2 cut(s) 192, 725
PscI ACATGT 1 cut(s) 870
Psp5II RGGWCCY 2 cut(s) 192, 725
Psp6I CCWGG 2 cut(s) 149, 727
PspEI GGTNACC 1 cut(s) 926
PspGI CCWGG 2 cut(s) 149, 727
PspN4I GGNNCC 3 cut(s) 726, 804, 856
PspPI GGNCC 2 cut(s) 192, 725
PspPPI RGGWCCY 2 cut(s) 192, 725
PstI CTGCAG 1 cut(s) 610
PsuI RGATCY 1 cut(s) 802
PvuII CAGCTG 1 cut(s) 1030
RsaI GTAC 4 cut(s) 7, 602, 637, 696
RsaNI GTAC 4 cut(s) 6, 601, 636, 695
RseI CAYNNNNRTG 2 cut(s) 871, 939
SapI GCTCTTC 1 cut(s) 531
SaqAI TTAA 5 cut(s) 20, 33, 200, 645, 1037
SatI GCNGC 2 cut(s) 430, 889
Sau3AI GATC 7 cut(s) 70, 802, 829, 1050, 1204, 1212, 1287
Sau96I GGNCC 2 cut(s) 192, 725
SchI GAGTC 2 cut(s) 172, 555
ScrFI CCNGG 2 cut(s) 151, 729
SduI GDGCHC 1 cut(s) 1143
SfaNI GCATC 4 cut(s) 316, 975, 1108, 1161
SfcI CTRYAG 2 cut(s) 439, 606
SinI GGWCC 2 cut(s) 192, 725
SmiMI CAYNNNNRTG 2 cut(s) 871, 939
SmlI CTYRAG 1 cut(s) 19
SmoI CTYRAG 1 cut(s) 19
SpeI ACTAGT 1 cut(s) 629
Sse9I AATT 6 cut(s) 63, 686, 1064, 1147, 1199, 1216
SsiI CCGC 5 cut(s) 92, 888, 891, 901, 1121
SspI AATATT 2 cut(s) 129, 790
SspMI CTAG 5 cut(s) 630, 878, 1094, 1184, 1321
StyD4I CCNGG 2 cut(s) 149, 727
StyI CCWWGG 1 cut(s) 208
TaaI ACNGT 2 cut(s) 932, 1013
TaiI ACGT 2 cut(s) 898, 1275
TaqI TCGA 3 cut(s) 106, 133, 388
TasI AATT 6 cut(s) 63, 686, 1064, 1147, 1199, 1216
TatI WGTACW 1 cut(s) 694
TauI GCSGC 1 cut(s) 891
TfiI GAWTC 1 cut(s) 576
Tru1I TTAA 5 cut(s) 20, 33, 200, 645, 1037
Tru9I TTAA 5 cut(s) 20, 33, 200, 645, 1037
TscAI CASTG 1 cut(s) 521
TseFI GTSAC 1 cut(s) 932
TseI GCWGC 1 cut(s) 429
Tsp45I GTSAC 1 cut(s) 932
TspDTI ATGAA 2 cut(s) 234, 568
TspGWI ACGGA 1 cut(s) 467
TspRI CASTG 1 cut(s) 521
Van91I CCANNNNNTGG 1 cut(s) 156
Vha464I CTTAAG 1 cut(s) 19
VpaK11BI GGWCC 2 cut(s) 192, 725
XapI RAATTY 1 cut(s) 1199
XceI RCATGY 1 cut(s) 874
XcmI CCANNNNNNNNNTGG 2 cut(s) 85, 1027
XmiI GTMKAC 1 cut(s) 1275
XspI CTAG 5 cut(s) 630, 878, 1094, 1184, 1321
ZraI GACGTC 1 cut(s) 896
Zsp2I ATGCAT 1 cut(s) 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.