RchiOBHm_Chr5g0034611

lanC-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0014003
Physical Location & Seq
Forward (+)
28488540 .. 28491265
2726 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1218 bp
ATGGCGGACCGATATTTCGCGAACGACATGCCGGAATTCGTAGAAGAGGCGTCGGCGGACGAGGCTAAAGTGGGCTCTTTCTCAAAGCTGCTGTCTCTTCCTTATCCAACTCTCTCCGGTATGCTCAGAAGCTCCGGTTTGGACCTCAAACAGACGGTGGTGATGCAGACATGGGGTGTGAGTGGCAAGCGTGTGGAAGATTATACTATGTATGCAGGGGCTCTTGGAACTGCTTGGTTGGCCTTTAAGGCTTACCAAGTCACCAACAACCACACTGATCTTAAATTGTGCTCTGACATTGTTAAGGCCTGTGATATAGCTTCTAGAGATTCTGGGTATGTGTCATTCATATGTGGGCGGGCTGGCGTTTGTGCCCTCGGTGCTGTGGTGGCAAAGCATGCTGGTGATGAAATGCTACTTGGCCACTACTTATCAAAATTTAAAGAGATCAAGCTCTCTAGCAATCTTCCAAATGAGTTATTATACGGCAGAGCTGGGTACTTATGGGCCTGTTCATTCTTAAACAAGAATGTTGGAAATGGAACAATTTCTACTACTCGCATAAGATCAGTTGTGGATGAAATTATAAAGGATGGTAGACAATTGGCCAAGAAGGGACGGAGCTCATTGATGTACGAATGGCATGGGAAGAAATACTGGGGTGCTGCCCATGGTCTGGCAGGAATTATGTATGTTTTGATGACCGTGCAACTGAAACGTGAGGAGGTTGAGGATGTCAAGGGTACTCTACGTTACATGATTAAGAATCGATTTCCCAGCGGTAACTTTCTTTCAAGTGAAGGAAGTGAATCAGACCGTCTTGTGCACTGGTGCCATGGTGCTCCTGGAGTTGCTCTTACACTTGTTAGAGCAGCTGAGGTTTTCGGAGATGAGGAATTTGTGCAGGCGGCTATAGATGCAGGGGAAGTGGTGTGGAGACGGGGTCTGCTAAAGCGAGTTGGCCTATGTCATGGCATAAGTGGGAACACTTACGTGTTTCTTTCACTCTACCGATTAACAGGTAAGGTGGAATACTTGTACAGGGCCAAAGCATTCGCTTGCTTTTTGTATGACAAAGGGCTAAAACTCATATCAGAGGGAAGGATGCATGGAGGTGACCGCCCCTATTCCCTGTTTGAGGGTGTTGGAGGAATGGCTCATCTCTTTTTGGACATGACTGAACCATCTGAAGCTCGGTTTCCCGGATATGAACTTTAA

Protein Analysis

405

Amino Acids

44.81

Weight (kDa)

8.46

Isoelectric Point (pI)

31.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LANC_like PF05147 65 - 405 2.3e-99 Lanthionine synthetase C-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014003)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52920
fragaria_vesca FvH4_3g20590 FvH4_3g20590
malus_domestica MD03G1223900.v1.1
prunus_persica Prupe.4G185600_v2.0.a1
pyrus_communis pycom03g17230
rosa_chinensis RchiOBHm_Chr5g0034611
rosa_laevigata RLG00000033558
rosa_multiflora Rmu_sc0017377.1_g000004
rosa_roxburghii Rroxscaffold_1G00045710
rosa_rugosa Rorug05G0147200
rosa_samantha Rh5AG239100 Rh5BG239800 Rh5CG270200 Rh5DG248000
rosa_wichuraiana Rw5G021820 Rw5G021910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 587
AccB1I GGYRCC 1 cut(s) 831
AccB7I CCANNNNNTGG 1 cut(s) 676
AccI GTMKAC 1 cut(s) 598
AccII CGCG 1 cut(s) 20
AciI CCGC 6 cut(s) 5, 56, 358, 780, 908, 1120
AcoI YGGCCR 2 cut(s) 421, 606
AcsI RAATTY 3 cut(s) 35, 437, 896
AcuI CTGAAG 1 cut(s) 1209
AcyI GRCGYC 1 cut(s) 50
AfaI GTAC 4 cut(s) 500, 635, 745, 1040
AfiI CCNNNNNNNGG 2 cut(s) 676, 1138
AflIII ACRYGT 1 cut(s) 993
AgsI TTSAA 1 cut(s) 795
AjnI CCWGG 1 cut(s) 844
AjuI GAANNNNNNNTTGG 2 cut(s) 402, 434
AleI CACNNNNGTG 1 cut(s) 992
AluBI AGCT 8 cut(s) 88, 132, 320, 454, 494, 624, 875, 1193
AluI AGCT 8 cut(s) 88, 132, 320, 454, 494, 624, 875, 1193
Alw21I GWGCWC 4 cut(s) 293, 626, 828, 844
Alw26I GTCTC 2 cut(s) 99, 931
Alw44I GTGCAC 1 cut(s) 824
AoxI GGCC 7 cut(s) 240, 306, 421, 507, 606, 961, 1044
ApaLI GTGCAC 1 cut(s) 824
ApeKI GCWGC 3 cut(s) 88, 665, 872
ApoI RAATTY 3 cut(s) 35, 437, 896
ArsI GACNNNNNNTTYG 3 cut(s) 31, 77, 109
Asp700I GAANNNNTTC 1 cut(s) 547
AspS9I GGNCC 4 cut(s) 7, 142, 507, 1044
AsuC2I CCSGG 1 cut(s) 1203
AsuHPI GGTGA 4 cut(s) 172, 253, 416, 1127
AvaII GGWCC 2 cut(s) 7, 142
BaeGI GKGCMC 2 cut(s) 376, 828
BalI TGGCCA 2 cut(s) 423, 608
BanI GGYRCC 1 cut(s) 831
BanII GRGCYC 3 cut(s) 77, 223, 626
Bbv12I GWGCWC 4 cut(s) 293, 626, 828, 844
BbvCI CCTCAGC 1 cut(s) 876
BbvI GCAGC 3 cut(s) 75, 652, 884
BccI CCATC 2 cut(s) 587, 1192
BceAI ACGGC 1 cut(s) 502
BcgI CGANNNNNNTGC 2 cut(s) 10, 44
BciT130I CCWGG 1 cut(s) 846
BcnI CCSGG 1 cut(s) 1203
BcoDI GTCTC 2 cut(s) 99, 931
BfaI CTAG 2 cut(s) 324, 459
BfmI CTRYAG 1 cut(s) 912
BglI GCCNNNNNGGC 1 cut(s) 248
BisI GCNGC 4 cut(s) 89, 666, 873, 909
BlsI GCNGC 4 cut(s) 90, 667, 874, 910
Bme1390I CCNGG 2 cut(s) 846, 1203
Bme18I GGWCC 2 cut(s) 7, 142
BmgT120I GGNCC 4 cut(s) 7, 142, 507, 1044
BmiI GGNNCC 1 cut(s) 833
BmrFI CCNGG 2 cut(s) 846, 1203
BmrI ACTGGG 1 cut(s) 667
BmsI GCATC 3 cut(s) 153, 907, 1095
BmuI ACTGGG 1 cut(s) 667
BpmI CTGGAG 1 cut(s) 867
Bpu10I CCTNAGC 1 cut(s) 876
BpuMI CCSGG 1 cut(s) 1203
Bsa29I ATCGAT 1 cut(s) 769
BsaAI YACGTR 1 cut(s) 994
BsaHI GRCGYC 1 cut(s) 50
BsaJI CCNNGG 3 cut(s) 376, 670, 835
BsaWI WCCGGW 2 cut(s) 116, 134
BsaXI ACNNNNNCTCC 2 cut(s) 928, 958
Bsc4I CCNNNNNNNGG 2 cut(s) 676, 1138
Bse1I ACTGG 2 cut(s) 662, 833
BseBI CCWGG 1 cut(s) 846
BseCI ATCGAT 1 cut(s) 769
BseDI CCNNGG 3 cut(s) 376, 670, 835
BseGI GGATG 4 cut(s) 583, 598, 739, 1110
BseLI CCNNNNNNNGG 2 cut(s) 676, 1138
BseMII CTCAG 2 cut(s) 139, 867
BseNI ACTGG 2 cut(s) 662, 833
BseRI GAGGAG 1 cut(s) 737
BseSI GKGCMC 2 cut(s) 376, 828
BseXI GCAGC 3 cut(s) 75, 652, 884
BseYI CCCAGC 2 cut(s) 494, 776
BsgI GTGCAG 1 cut(s) 923
Bsh1236I CGCG 1 cut(s) 20
BshFI GGCC 7 cut(s) 242, 308, 423, 509, 608, 963, 1046
BshNI GGYRCC 1 cut(s) 831
BshVI ATCGAT 1 cut(s) 769
BsiHKAI GWGCWC 4 cut(s) 293, 626, 828, 844
BsiSI CCGG 4 cut(s) 32, 117, 135, 1203
BslFI GGGAC 1 cut(s) 630
BslI CCNNNNNNNGG 2 cut(s) 676, 1138
BsmAI GTCTC 2 cut(s) 99, 931
BsmBI CGTCTC 1 cut(s) 931
BsmFI GGGAC 1 cut(s) 630
BsmI GAATGC 1 cut(s) 1052
BsnI GGCC 7 cut(s) 242, 308, 423, 509, 608, 963, 1046
Bsp1286I GDGCHC 7 cut(s) 77, 223, 293, 376, 626, 828, 844
Bsp1407I TGTACA 1 cut(s) 1038
Bsp143I GATC 3 cut(s) 277, 447, 566
Bsp19I CCATGG 2 cut(s) 670, 835
Bsp68I TCGCGA 1 cut(s) 20
BspACI CCGC 6 cut(s) 5, 56, 358, 780, 908, 1120
BspANI GGCC 7 cut(s) 242, 308, 423, 509, 608, 963, 1046
BspCNI CTCAG 2 cut(s) 138, 868
BspDI ATCGAT 1 cut(s) 769
BspFNI CGCG 1 cut(s) 20
BspLI GGNNCC 1 cut(s) 833
BspT107I GGYRCC 1 cut(s) 831
BsrGI TGTACA 1 cut(s) 1038
BsrI ACTGG 2 cut(s) 662, 833
BssECI CCNNGG 3 cut(s) 376, 670, 835
BssMI GATC 3 cut(s) 277, 447, 566
BssNI GRCGYC 1 cut(s) 50
BssT1I CCWWGG 2 cut(s) 670, 835
Bst2UI CCWGG 1 cut(s) 846
Bst4CI ACNGT 3 cut(s) 157, 706, 818
Bst6I CTCTTC 2 cut(s) 39, 102
BstACI GRCGYC 1 cut(s) 50
BstAPI GCANNNNNTGC 1 cut(s) 398
BstAUI TGTACA 1 cut(s) 1038
BstBAI YACGTR 1 cut(s) 994
BstC8I GCNNGC 6 cut(s) 188, 360, 364, 399, 906, 1060
BstDEI CTNAG 2 cut(s) 125, 876
BstDSI CCRYGG 2 cut(s) 670, 835
BstEII GGTNACC 1 cut(s) 1115
BstENI CCTNNNNNAGG 1 cut(s) 1136
BstF5I GGATG 4 cut(s) 583, 598, 739, 1110
BstFNI CGCG 1 cut(s) 20
BstKTI GATC 3 cut(s) 280, 450, 569
BstMAI GTCTC 2 cut(s) 99, 931
BstMBI GATC 3 cut(s) 277, 447, 566
BstMWI GCNNNNNNNGC 7 cut(s) 62, 239, 248, 380, 389, 398, 917
BstNI CCWGG 1 cut(s) 846
BstNSI RCATGY 2 cut(s) 31, 401
BstPI GGTNACC 1 cut(s) 1115
BstSCI CCNGG 2 cut(s) 844, 1201
BstSFI CTRYAG 1 cut(s) 912
BstSLI GKGCMC 2 cut(s) 376, 828
BstUI CGCG 1 cut(s) 20
BstV1I GCAGC 3 cut(s) 75, 652, 884
Bsu15I ATCGAT 1 cut(s) 769
BsuRI GGCC 7 cut(s) 242, 308, 423, 509, 608, 963, 1046
BsuTUI ATCGAT 1 cut(s) 769
BtgI CCRYGG 2 cut(s) 670, 835
BtsCI GGATG 4 cut(s) 583, 598, 739, 1110
BtsIMutI CAGTG 2 cut(s) 273, 826
BtuMI TCGCGA 1 cut(s) 20
Cac8I GCNNGC 6 cut(s) 188, 360, 364, 399, 906, 1060
Cfr13I GGNCC 4 cut(s) 7, 142, 507, 1044
ClaI ATCGAT 1 cut(s) 769
CpoI CGGWCCG 1 cut(s) 7
CseI GACGC 1 cut(s) 39
Csp6I GTAC 4 cut(s) 499, 634, 744, 1039
CspI CGGWCCG 1 cut(s) 7
CviQI GTAC 4 cut(s) 499, 634, 744, 1039
DdeI CTNAG 2 cut(s) 125, 876
DpnI GATC 3 cut(s) 279, 449, 568
DpnII GATC 3 cut(s) 277, 447, 566
DraI TTTAAA 1 cut(s) 442
EaeI YGGCCR 2 cut(s) 421, 606
Eam1104I CTCTTC 2 cut(s) 39, 102
EarI CTCTTC 2 cut(s) 39, 102
EciI GGCGGA 2 cut(s) 20, 71
Ecl136II GAGCTC 1 cut(s) 624
Eco130I CCWWGG 2 cut(s) 670, 835
Eco147I AGGCCT 1 cut(s) 308
Eco24I GRGCYC 3 cut(s) 77, 223, 626
Eco47I GGWCC 2 cut(s) 7, 142
Eco53kI GAGCTC 1 cut(s) 624
Eco57I CTGAAG 1 cut(s) 1209
Eco91I GGTNACC 1 cut(s) 1115
EcoICRI GAGCTC 1 cut(s) 624
EcoNI CCTNNNNNAGG 1 cut(s) 1136
EcoO65I GGTNACC 1 cut(s) 1115
EcoRI GAATTC 1 cut(s) 35
EcoRII CCWGG 1 cut(s) 844
EcoT14I CCWWGG 2 cut(s) 670, 835
EcoT22I ATGCAT 1 cut(s) 1110
EcoT38I GRGCYC 3 cut(s) 77, 223, 626
ErhI CCWWGG 2 cut(s) 670, 835
Esp3I CGTCTC 1 cut(s) 931
FaqI GGGAC 1 cut(s) 630
FauI CCCGC 1 cut(s) 351
FauNDI CATATG 1 cut(s) 350
FblI GTMKAC 1 cut(s) 598
Fnu4HI GCNGC 4 cut(s) 89, 666, 873, 909
FokI GGATG 4 cut(s) 590, 605, 746, 1117
FriOI GRGCYC 3 cut(s) 77, 223, 626
Fsp4HI GCNGC 4 cut(s) 89, 666, 873, 909
FspBI CTAG 2 cut(s) 324, 459
GluI GCNGC 4 cut(s) 89, 666, 873, 909
GsaI CCCAGC 2 cut(s) 498, 780
GsuI CTGGAG 1 cut(s) 867
HaeIII GGCC 7 cut(s) 242, 308, 423, 509, 608, 963, 1046
HapII CCGG 4 cut(s) 32, 117, 135, 1203
HgaI GACGC 1 cut(s) 39
Hin1I GRCGYC 1 cut(s) 50
HinfI GANTC 3 cut(s) 329, 766, 809
HpaII CCGG 4 cut(s) 32, 117, 135, 1203
HphI GGTGA 4 cut(s) 172, 253, 416, 1127
Hpy166II GTNNAC 2 cut(s) 599, 826
Hpy188I TCNGA 6 cut(s) 128, 295, 814, 887, 1096, 1189
Hpy188III TCNNGA 2 cut(s) 19, 324
Hpy8I GTNNAC 2 cut(s) 599, 826
Hpy99I CGWCG 1 cut(s) 55
HpyAV CCTTC 3 cut(s) 607, 794, 1095
HpyCH4III ACNGT 3 cut(s) 157, 706, 818
HpyCH4IV ACGT 3 cut(s) 718, 751, 993
HpyCH4V TGCA 7 cut(s) 166, 215, 709, 826, 904, 920, 1108
HpyF10VI GCNNNNNNNGC 7 cut(s) 62, 239, 248, 380, 389, 398, 917
HpyF3I CTNAG 2 cut(s) 125, 876
HpySE526I ACGT 3 cut(s) 718, 751, 993
Hsp92I GRCGYC 1 cut(s) 50
Kzo9I GATC 3 cut(s) 277, 447, 566
LmnI GCTCC 3 cut(s) 137, 621, 847
Lsp1109I GCAGC 3 cut(s) 75, 652, 884
LweI GCATC 3 cut(s) 153, 907, 1095
MaeI CTAG 2 cut(s) 324, 459
MaeII ACGT 3 cut(s) 718, 751, 993
MaeIII GTNAC 4 cut(s) 259, 752, 782, 1115
MalI GATC 3 cut(s) 279, 449, 568
MboI GATC 3 cut(s) 277, 447, 566
MboII GAAGA 5 cut(s) 56, 89, 209, 458, 661
MfeI CAATTG 1 cut(s) 602
MhlI GDGCHC 7 cut(s) 77, 223, 293, 376, 626, 828, 844
MlsI TGGCCA 2 cut(s) 423, 608
MluCI AATT 8 cut(s) 35, 284, 437, 546, 582, 602, 684, 896
MluNI TGGCCA 2 cut(s) 423, 608
MmeI TCCRAC 3 cut(s) 131, 514, 1126
Mox20I TGGCCA 2 cut(s) 423, 608
Mph1103I ATGCAT 1 cut(s) 1110
MroXI GAANNNNTTC 1 cut(s) 547
MscI TGGCCA 2 cut(s) 423, 608
MseI TTAA 8 cut(s) 246, 282, 303, 441, 521, 762, 1016, 1216
MslI CAYNNNNRTG 4 cut(s) 349, 402, 992, 1113
Msp20I TGGCCA 2 cut(s) 423, 608
MspA1I CMGCKG 2 cut(s) 780, 875
MspI CCGG 4 cut(s) 32, 117, 135, 1203
MspR9I CCNGG 2 cut(s) 846, 1203
MunI CAATTG 1 cut(s) 602
Mva1269I GAATGC 1 cut(s) 1052
MvaI CCWGG 1 cut(s) 846
MvnI CGCG 1 cut(s) 20
MwoI GCNNNNNNNGC 7 cut(s) 62, 239, 248, 380, 389, 398, 917
NciI CCSGG 1 cut(s) 1203
NcoI CCATGG 2 cut(s) 670, 835
NdeI CATATG 1 cut(s) 350
NdeII GATC 3 cut(s) 277, 447, 566
NlaIV GGNNCC 1 cut(s) 833
NmuCI GTSAC 2 cut(s) 259, 1115
NruI TCGCGA 1 cut(s) 20
NsiI ATGCAT 1 cut(s) 1110
NspI RCATGY 2 cut(s) 31, 401
OliI CACNNNNGTG 1 cut(s) 992
PaeI GCATGC 1 cut(s) 401
PceI AGGCCT 1 cut(s) 308
PctI GAATGC 1 cut(s) 1052
PdmI GAANNNNTTC 1 cut(s) 547
PfeI GAWTC 3 cut(s) 329, 766, 809
PflFI GACNNNGTC 1 cut(s) 942
PflMI CCANNNNNTGG 1 cut(s) 676
PfoI TCCNGGA 2 cut(s) 844, 1201
PkrI GCNGC 4 cut(s) 90, 667, 874, 910
Ppu21I YACGTR 1 cut(s) 994
PsiI TTATAA 1 cut(s) 587
Psp124BI GAGCTC 1 cut(s) 626
Psp6I CCWGG 1 cut(s) 844
PspEI GGTNACC 1 cut(s) 1115
PspFI CCCAGC 2 cut(s) 494, 776
PspGI CCWGG 1 cut(s) 844
PspN4I GGNNCC 1 cut(s) 833
PspPI GGNCC 4 cut(s) 7, 142, 507, 1044
PsrI GAACNNNNNNTAC 2 cut(s) 535, 567
PsyI GACNNNGTC 1 cut(s) 942
PvuII CAGCTG 1 cut(s) 875
RruI TCGCGA 1 cut(s) 20
RsaI GTAC 4 cut(s) 500, 635, 745, 1040
RsaNI GTAC 4 cut(s) 499, 634, 744, 1039
RseI CAYNNNNRTG 4 cut(s) 349, 402, 992, 1113
Rsr2I CGGWCCG 1 cut(s) 7
RsrII CGGWCCG 1 cut(s) 7
SacI GAGCTC 1 cut(s) 626
SaqAI TTAA 8 cut(s) 246, 282, 303, 441, 521, 762, 1016, 1216
SatI GCNGC 4 cut(s) 89, 666, 873, 909
Sau3AI GATC 3 cut(s) 277, 447, 566
Sau96I GGNCC 4 cut(s) 7, 142, 507, 1044
ScrFI CCNGG 2 cut(s) 846, 1203
SduI GDGCHC 7 cut(s) 77, 223, 293, 376, 626, 828, 844
SfaNI GCATC 3 cut(s) 153, 907, 1095
SfcI CTRYAG 1 cut(s) 912
SinI GGWCC 2 cut(s) 7, 142
SmiMI CAYNNNNRTG 4 cut(s) 349, 402, 992, 1113
SphI GCATGC 1 cut(s) 401
Sse9I AATT 8 cut(s) 35, 284, 437, 546, 582, 602, 684, 896
SseBI AGGCCT 1 cut(s) 308
SsiI CCGC 6 cut(s) 5, 56, 358, 780, 908, 1120
SspMI CTAG 2 cut(s) 324, 459
SstI GAGCTC 1 cut(s) 626
StuI AGGCCT 1 cut(s) 308
StyD4I CCNGG 2 cut(s) 844, 1201
StyI CCWWGG 2 cut(s) 670, 835
TaaI ACNGT 3 cut(s) 157, 706, 818
TaiI ACGT 3 cut(s) 721, 754, 996
TaqI TCGA 1 cut(s) 769
TaqII GACCGA 1 cut(s) 24
TasI AATT 8 cut(s) 35, 284, 437, 546, 582, 602, 684, 896
TatI WGTACW 1 cut(s) 1038
TauI GCSGC 1 cut(s) 911
TfiI GAWTC 3 cut(s) 329, 766, 809
Tru1I TTAA 8 cut(s) 246, 282, 303, 441, 521, 762, 1016, 1216
Tru9I TTAA 8 cut(s) 246, 282, 303, 441, 521, 762, 1016, 1216
TscAI CASTG 2 cut(s) 280, 833
TseFI GTSAC 2 cut(s) 259, 1115
TseI GCWGC 3 cut(s) 88, 665, 872
Tsp45I GTSAC 2 cut(s) 259, 1115
TspDTI ATGAA 4 cut(s) 337, 423, 504, 594
TspGWI ACGGA 1 cut(s) 634
TspRI CASTG 2 cut(s) 280, 833
Tth111I GACNNNGTC 1 cut(s) 942
Van91I CCANNNNNTGG 1 cut(s) 676
VneI GTGCAC 1 cut(s) 824
VpaK11BI GGWCC 2 cut(s) 7, 142
XagI CCTNNNNNAGG 1 cut(s) 1136
XapI RAATTY 3 cut(s) 35, 437, 896
XbaI TCTAGA 1 cut(s) 323
XceI RCATGY 2 cut(s) 31, 401
XcmI CCANNNNNNNNNTGG 1 cut(s) 842
XmiI GTMKAC 1 cut(s) 598
XmnI GAANNNNTTC 1 cut(s) 547
XspI CTAG 2 cut(s) 324, 459
Zsp2I ATGCAT 1 cut(s) 1110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.