zipper protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g22020 FvH4_3g22021 |
| malus_domestica | MD11G1223900.v1.1 |
| prunus_persica | Prupe.4G205900_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr5g0037891 |
| rosa_laevigata | RLG00000033820 |
| rosa_multiflora | Rmu_sc0005416.1_g000025 |
| rosa_roxburghii | Rroxscaffold_1G00043030 |
| rosa_rugosa | Rorug05G0168500 |
| rosa_samantha | Rh5AG257100 Rh5BG259700 Rh5CG292700 Rh5DG269600 |
| rosa_wichuraiana | Rw5G023850 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 387 |
| Acc65I | GGTACC | 1 cut(s) | 1202 |
| AccB1I | GGYRCC | 2 cut(s) | 1142, 1202 |
| AccI | GTMKAC | 1 cut(s) | 36 |
| AccII | CGCG | 2 cut(s) | 1033, 1368 |
| AciI | CCGC | 3 cut(s) | 687, 732, 1700 |
| AcoI | YGGCCR | 1 cut(s) | 1635 |
| AcsI | RAATTY | 5 cut(s) | 88, 278, 308, 410, 991 |
| AfaI | GTAC | 4 cut(s) | 325, 1204, 1417, 1520 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 389, 1139 |
| AgsI | TTSAA | 8 cut(s) | 159, 530, 1057, 1382, 1475, 1730, 1766, 1808 |
| AjnI | CCWGG | 5 cut(s) | 457, 1186, 1198, 1357, 1488 |
| Alw26I | GTCTC | 2 cut(s) | 82, 357 |
| Ama87I | CYCGRG | 1 cut(s) | 237 |
| AoxI | GGCC | 3 cut(s) | 228, 434, 1635 |
| ApeKI | GCWGC | 2 cut(s) | 1404, 1697 |
| ApoI | RAATTY | 5 cut(s) | 88, 278, 308, 410, 991 |
| Asp718I | GGTACC | 1 cut(s) | 1202 |
| AspLEI | GCGC | 1 cut(s) | 938 |
| AspS9I | GGNCC | 2 cut(s) | 229, 1351 |
| AsuC2I | CCSGG | 1 cut(s) | 1606 |
| AsuHPI | GGTGA | 2 cut(s) | 1289, 1675 |
| AsuII | TTCGAA | 2 cut(s) | 618, 796 |
| AvaI | CYCGRG | 1 cut(s) | 237 |
| AvaII | GGWCC | 1 cut(s) | 1351 |
| BaeGI | GKGCMC | 1 cut(s) | 1129 |
| BalI | TGGCCA | 1 cut(s) | 1637 |
| BanI | GGYRCC | 2 cut(s) | 1142, 1202 |
| BauI | CACGAG | 1 cut(s) | 486 |
| BbsI | GAAGAC | 1 cut(s) | 805 |
| BbvI | GCAGC | 2 cut(s) | 1416, 1709 |
| BccI | CCATC | 8 cut(s) | 73, 412, 626, 790, 814, 1239, 1562, 1622 |
| BciT130I | CCWGG | 5 cut(s) | 459, 1188, 1200, 1359, 1490 |
| BciVI | GTATCC | 2 cut(s) | 39, 766 |
| BcnI | CCSGG | 1 cut(s) | 1606 |
| BcoDI | GTCTC | 2 cut(s) | 82, 357 |
| BfaI | CTAG | 4 cut(s) | 233, 579, 690, 1173 |
| BfmI | CTRYAG | 1 cut(s) | 1107 |
| BfuAI | ACCTGC | 1 cut(s) | 387 |
| BfuI | GTATCC | 2 cut(s) | 39, 766 |
| BisI | GCNGC | 2 cut(s) | 1405, 1698 |
| BlsI | GCNGC | 2 cut(s) | 1406, 1699 |
| Bme1390I | CCNGG | 6 cut(s) | 459, 1188, 1200, 1359, 1490, 1606 |
| Bme18I | GGWCC | 1 cut(s) | 1351 |
| BmeT110I | CYCGRG | 1 cut(s) | 237 |
| BmgT120I | GGNCC | 2 cut(s) | 229, 1351 |
| BmiI | GGNNCC | 4 cut(s) | 1144, 1204, 1352, 1353 |
| BmrFI | CCNGG | 6 cut(s) | 459, 1188, 1200, 1359, 1490, 1606 |
| BmrI | ACTGGG | 1 cut(s) | 1356 |
| BmsI | GCATC | 2 cut(s) | 830, 1610 |
| BmuI | ACTGGG | 1 cut(s) | 1356 |
| BpiI | GAAGAC | 1 cut(s) | 805 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 34, 66 |
| BpmI | CTGGAG | 2 cut(s) | 1182, 1341 |
| Bpu14I | TTCGAA | 2 cut(s) | 618, 796 |
| BpuMI | CCSGG | 1 cut(s) | 1606 |
| BsaBI | GATNNNNATC | 2 cut(s) | 338, 1766 |
| BsaJI | CCNNGG | 2 cut(s) | 759, 1186 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 988, 1018 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 389, 1139 |
| Bse1I | ACTGG | 7 cut(s) | 132, 467, 561, 915, 1238, 1351, 1543 |
| Bse3DI | GCAATG | 3 cut(s) | 213, 554, 1279 |
| Bse8I | GATNNNNATC | 2 cut(s) | 338, 1766 |
| BseBI | CCWGG | 5 cut(s) | 459, 1188, 1200, 1359, 1490 |
| BseDI | CCNNGG | 2 cut(s) | 759, 1186 |
| BseGI | GGATG | 6 cut(s) | 818, 845, 1077, 1573, 1601, 1614 |
| BseJI | GATNNNNATC | 2 cut(s) | 338, 1766 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 389, 1139 |
| BseMI | GCAATG | 3 cut(s) | 213, 554, 1279 |
| BseMII | CTCAG | 3 cut(s) | 83, 293, 648 |
| BseNI | ACTGG | 7 cut(s) | 132, 467, 561, 915, 1238, 1351, 1543 |
| BseRI | GAGGAG | 2 cut(s) | 1707, 1707 |
| BseSI | GKGCMC | 1 cut(s) | 1129 |
| BseXI | GCAGC | 2 cut(s) | 1416, 1709 |
| BseYI | CCCAGC | 1 cut(s) | 1037 |
| Bsh1236I | CGCG | 2 cut(s) | 1033, 1368 |
| BshFI | GGCC | 3 cut(s) | 230, 436, 1637 |
| BshNI | GGYRCC | 2 cut(s) | 1142, 1202 |
| BsiHKCI | CYCGRG | 1 cut(s) | 237 |
| BsiSI | CCGG | 1 cut(s) | 1605 |
| BslFI | GGGAC | 2 cut(s) | 1226, 1364 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 389, 1139 |
| BsmAI | GTCTC | 2 cut(s) | 82, 357 |
| BsmFI | GGGAC | 2 cut(s) | 1226, 1364 |
| BsnI | GGCC | 3 cut(s) | 230, 436, 1637 |
| BsoBI | CYCGRG | 1 cut(s) | 237 |
| Bsp119I | TTCGAA | 2 cut(s) | 618, 796 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1129 |
| Bsp143I | GATC | 1 cut(s) | 136 |
| Bsp68I | TCGCGA | 1 cut(s) | 1033 |
| BspACI | CCGC | 3 cut(s) | 687, 732, 1700 |
| BspANI | GGCC | 3 cut(s) | 230, 436, 1637 |
| BspCNI | CTCAG | 3 cut(s) | 82, 294, 649 |
| BspFNI | CGCG | 2 cut(s) | 1033, 1368 |
| BspLI | GGNNCC | 4 cut(s) | 1144, 1204, 1352, 1353 |
| BspMI | ACCTGC | 1 cut(s) | 387 |
| BspQI | GCTCTTC | 1 cut(s) | 207 |
| BspT104I | TTCGAA | 2 cut(s) | 618, 796 |
| BspT107I | GGYRCC | 2 cut(s) | 1142, 1202 |
| BsrDI | GCAATG | 3 cut(s) | 213, 554, 1279 |
| BsrI | ACTGG | 7 cut(s) | 132, 467, 561, 915, 1238, 1351, 1543 |
| BssECI | CCNNGG | 2 cut(s) | 759, 1186 |
| BssMI | GATC | 1 cut(s) | 136 |
| BssSI | CACGAG | 1 cut(s) | 486 |
| BssT1I | CCWWGG | 1 cut(s) | 759 |
| Bst2BI | CACGAG | 1 cut(s) | 486 |
| Bst2UI | CCWGG | 5 cut(s) | 459, 1188, 1200, 1359, 1490 |
| Bst4CI | ACNGT | 1 cut(s) | 1759 |
| Bst6I | CTCTTC | 1 cut(s) | 207 |
| BstBI | TTCGAA | 2 cut(s) | 618, 796 |
| BstC8I | GCNNGC | 2 cut(s) | 115, 1035 |
| BstDEI | CTNAG | 5 cut(s) | 69, 284, 302, 657, 846 |
| BstF5I | GGATG | 6 cut(s) | 818, 845, 1077, 1573, 1601, 1614 |
| BstFNI | CGCG | 2 cut(s) | 1033, 1368 |
| BstHHI | GCGC | 1 cut(s) | 938 |
| BstKTI | GATC | 1 cut(s) | 139 |
| BstMAI | GTCTC | 2 cut(s) | 82, 357 |
| BstMBI | GATC | 1 cut(s) | 136 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 203, 935, 1340, 1556, 1598 |
| BstNI | CCWGG | 5 cut(s) | 459, 1188, 1200, 1359, 1490 |
| BstNSI | RCATGY | 2 cut(s) | 59, 869 |
| BstSCI | CCNGG | 6 cut(s) | 457, 1186, 1198, 1357, 1488, 1604 |
| BstSFI | CTRYAG | 1 cut(s) | 1107 |
| BstSLI | GKGCMC | 1 cut(s) | 1129 |
| BstUI | CGCG | 2 cut(s) | 1033, 1368 |
| BstV1I | GCAGC | 2 cut(s) | 1416, 1709 |
| BstV2I | GAAGAC | 1 cut(s) | 805 |
| BsuI | GTATCC | 2 cut(s) | 39, 766 |
| BsuRI | GGCC | 3 cut(s) | 230, 436, 1637 |
| BtsCI | GGATG | 6 cut(s) | 818, 845, 1077, 1573, 1601, 1614 |
| BtsI | GCAGTG | 1 cut(s) | 260 |
| BtsIMutI | CAGTG | 3 cut(s) | 139, 260, 908 |
| BtuMI | TCGCGA | 1 cut(s) | 1033 |
| BveI | ACCTGC | 1 cut(s) | 387 |
| Cac8I | GCNNGC | 2 cut(s) | 115, 1035 |
| CfoI | GCGC | 1 cut(s) | 938 |
| Cfr13I | GGNCC | 2 cut(s) | 229, 1351 |
| Csp6I | GTAC | 4 cut(s) | 324, 1203, 1416, 1519 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 573, 608 |
| CviAII | CATG | 8 cut(s) | 40, 56, 145, 665, 866, 1291, 1552, 1586 |
| CviQI | GTAC | 4 cut(s) | 324, 1203, 1416, 1519 |
| DdeI | CTNAG | 5 cut(s) | 69, 284, 302, 657, 846 |
| DpnI | GATC | 1 cut(s) | 138 |
| DpnII | GATC | 1 cut(s) | 136 |
| DraI | TTTAAA | 1 cut(s) | 990 |
| EaeI | YGGCCR | 1 cut(s) | 1635 |
| Eam1104I | CTCTTC | 1 cut(s) | 207 |
| EarI | CTCTTC | 1 cut(s) | 207 |
| Eco130I | CCWWGG | 1 cut(s) | 759 |
| Eco32I | GATATC | 1 cut(s) | 292 |
| Eco47I | GGWCC | 1 cut(s) | 1351 |
| Eco88I | CYCGRG | 1 cut(s) | 237 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1351 |
| EcoRII | CCWGG | 5 cut(s) | 457, 1186, 1198, 1357, 1488 |
| EcoRV | GATATC | 1 cut(s) | 292 |
| EcoT14I | CCWWGG | 1 cut(s) | 759 |
| ErhI | CCWWGG | 1 cut(s) | 759 |
| FaeI | CATG | 8 cut(s) | 43, 59, 148, 668, 869, 1294, 1555, 1589 |
| FaqI | GGGAC | 2 cut(s) | 1226, 1364 |
| FatI | CATG | 8 cut(s) | 39, 55, 144, 664, 865, 1290, 1551, 1585 |
| FauI | CCCGC | 1 cut(s) | 694 |
| FauNDI | CATATG | 1 cut(s) | 854 |
| FblI | GTMKAC | 1 cut(s) | 36 |
| Fnu4HI | GCNGC | 2 cut(s) | 1405, 1698 |
| FokI | GGATG | 6 cut(s) | 825, 852, 1084, 1580, 1588, 1601 |
| Fsp4HI | GCNGC | 2 cut(s) | 1405, 1698 |
| FspBI | CTAG | 4 cut(s) | 233, 579, 690, 1173 |
| GlaI | GCGC | 1 cut(s) | 937 |
| GluI | GCNGC | 2 cut(s) | 1405, 1698 |
| GsaI | CCCAGC | 1 cut(s) | 1041 |
| GsuI | CTGGAG | 2 cut(s) | 1182, 1341 |
| HaeIII | GGCC | 3 cut(s) | 230, 436, 1637 |
| HapII | CCGG | 1 cut(s) | 1605 |
| HhaI | GCGC | 1 cut(s) | 938 |
| Hin1II | CATG | 8 cut(s) | 43, 59, 148, 668, 869, 1294, 1555, 1589 |
| Hin6I | GCGC | 1 cut(s) | 936 |
| HinP1I | GCGC | 1 cut(s) | 936 |
| HincII | GTYRAC | 2 cut(s) | 520, 1665 |
| HindII | GTYRAC | 2 cut(s) | 520, 1665 |
| HindIII | AAGCTT | 2 cut(s) | 1048, 1058 |
| HpaII | CCGG | 1 cut(s) | 1605 |
| HphI | GGTGA | 2 cut(s) | 1289, 1675 |
| Hpy166II | GTNNAC | 6 cut(s) | 37, 520, 719, 892, 1528, 1665 |
| Hpy188I | TCNGA | 9 cut(s) | 202, 303, 376, 392, 409, 478, 1015, 1066, 1813 |
| Hpy8I | GTNNAC | 6 cut(s) | 37, 520, 719, 892, 1528, 1665 |
| HpyAV | CCTTC | 5 cut(s) | 614, 1448, 1459, 1628, 1682 |
| HpyCH4III | ACNGT | 1 cut(s) | 1759 |
| HpyCH4IV | ACGT | 1 cut(s) | 326 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 203, 935, 1340, 1556, 1598 |
| HpyF3I | CTNAG | 5 cut(s) | 69, 284, 302, 657, 846 |
| HpySE526I | ACGT | 1 cut(s) | 326 |
| Hsp92II | CATG | 8 cut(s) | 43, 59, 148, 668, 869, 1294, 1555, 1589 |
| HspAI | GCGC | 1 cut(s) | 936 |
| KflI | GGGWCCC | 1 cut(s) | 1351 |
| KpnI | GGTACC | 1 cut(s) | 1206 |
| Kzo9I | GATC | 1 cut(s) | 136 |
| LguI | GCTCTTC | 1 cut(s) | 207 |
| LmnI | GCTCC | 2 cut(s) | 862, 1694 |
| Lsp1109I | GCAGC | 2 cut(s) | 1416, 1709 |
| LweI | GCATC | 2 cut(s) | 830, 1610 |
| MaeI | CTAG | 4 cut(s) | 233, 579, 690, 1173 |
| MaeII | ACGT | 1 cut(s) | 326 |
| MaeIII | GTNAC | 5 cut(s) | 151, 257, 1159, 1459, 1496 |
| MalI | GATC | 1 cut(s) | 138 |
| MboI | GATC | 1 cut(s) | 136 |
| MboII | GAAGA | 5 cut(s) | 224, 474, 810, 1160, 1226 |
| MfeI | CAATTG | 1 cut(s) | 530 |
| MhlI | GDGCHC | 1 cut(s) | 1129 |
| MlsI | TGGCCA | 1 cut(s) | 1637 |
| MluNI | TGGCCA | 1 cut(s) | 1637 |
| MlyI | GAGTC | 3 cut(s) | 359, 1499, 1660 |
| Mox20I | TGGCCA | 1 cut(s) | 1637 |
| MscI | TGGCCA | 1 cut(s) | 1637 |
| MseI | TTAA | 5 cut(s) | 399, 818, 903, 989, 1178 |
| MslI | CAYNNNNRTG | 3 cut(s) | 347, 811, 857 |
| Msp20I | TGGCCA | 1 cut(s) | 1637 |
| MspA1I | CMGCKG | 4 cut(s) | 656, 724, 732, 1700 |
| MspI | CCGG | 1 cut(s) | 1605 |
| MspR9I | CCNGG | 6 cut(s) | 459, 1188, 1200, 1359, 1490, 1606 |
| MunI | CAATTG | 1 cut(s) | 530 |
| MvaI | CCWGG | 5 cut(s) | 459, 1188, 1200, 1359, 1490 |
| MvnI | CGCG | 2 cut(s) | 1033, 1368 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 203, 935, 1340, 1556, 1598 |
| NciI | CCSGG | 1 cut(s) | 1606 |
| NdeI | CATATG | 1 cut(s) | 854 |
| NdeII | GATC | 1 cut(s) | 136 |
| NlaIII | CATG | 8 cut(s) | 43, 59, 148, 668, 869, 1294, 1555, 1589 |
| NlaIV | GGNNCC | 4 cut(s) | 1144, 1204, 1352, 1353 |
| NmuCI | GTSAC | 2 cut(s) | 257, 1159 |
| NruI | TCGCGA | 1 cut(s) | 1033 |
| NspI | RCATGY | 2 cut(s) | 59, 869 |
| NspV | TTCGAA | 2 cut(s) | 618, 796 |
| PaeR7I | CTCGAG | 1 cut(s) | 237 |
| PciSI | GCTCTTC | 1 cut(s) | 207 |
| PfeI | GAWTC | 8 cut(s) | 387, 479, 615, 1280, 1287, 1646, 1762, 1808 |
| PflFI | GACNNNGTC | 1 cut(s) | 500 |
| PfoI | TCCNGGA | 2 cut(s) | 1357, 1488 |
| PkrI | GCNGC | 2 cut(s) | 1406, 1699 |
| PleI | GAGTC | 3 cut(s) | 359, 1499, 1660 |
| PpsI | GAGTC | 3 cut(s) | 359, 1499, 1660 |
| PpuMI | RGGWCCY | 1 cut(s) | 1351 |
| Psp5II | RGGWCCY | 1 cut(s) | 1351 |
| Psp6I | CCWGG | 5 cut(s) | 457, 1186, 1198, 1357, 1488 |
| PspFI | CCCAGC | 1 cut(s) | 1037 |
| PspGI | CCWGG | 5 cut(s) | 457, 1186, 1198, 1357, 1488 |
| PspN4I | GGNNCC | 4 cut(s) | 1144, 1204, 1352, 1353 |
| PspPI | GGNCC | 2 cut(s) | 229, 1351 |
| PspPPI | RGGWCCY | 1 cut(s) | 1351 |
| PsyI | GACNNNGTC | 1 cut(s) | 500 |
| PvuII | CAGCTG | 2 cut(s) | 656, 724 |
| RruI | TCGCGA | 1 cut(s) | 1033 |
| RsaI | GTAC | 4 cut(s) | 325, 1204, 1417, 1520 |
| RsaNI | GTAC | 4 cut(s) | 324, 1203, 1416, 1519 |
| RseI | CAYNNNNRTG | 3 cut(s) | 347, 811, 857 |
| SapI | GCTCTTC | 1 cut(s) | 207 |
| SaqAI | TTAA | 5 cut(s) | 399, 818, 903, 989, 1178 |
| SatI | GCNGC | 2 cut(s) | 1405, 1698 |
| Sau3AI | GATC | 1 cut(s) | 136 |
| Sau96I | GGNCC | 2 cut(s) | 229, 1351 |
| SchI | GAGTC | 3 cut(s) | 359, 1499, 1660 |
| ScrFI | CCNGG | 6 cut(s) | 459, 1188, 1200, 1359, 1490, 1606 |
| SduI | GDGCHC | 1 cut(s) | 1129 |
| SfaNI | GCATC | 2 cut(s) | 830, 1610 |
| SfcI | CTRYAG | 1 cut(s) | 1107 |
| Sfr274I | CTCGAG | 1 cut(s) | 237 |
| SfuI | TTCGAA | 2 cut(s) | 618, 796 |
| SinI | GGWCC | 1 cut(s) | 1351 |
| SlaI | CTCGAG | 1 cut(s) | 237 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 347, 811, 857 |
| SmlI | CTYRAG | 1 cut(s) | 237 |
| SmoI | CTYRAG | 1 cut(s) | 237 |
| SsiI | CCGC | 3 cut(s) | 687, 732, 1700 |
| SspI | AATATT | 2 cut(s) | 121, 571 |
| SspMI | CTAG | 4 cut(s) | 233, 579, 690, 1173 |
| StyD4I | CCNGG | 6 cut(s) | 457, 1186, 1198, 1357, 1488, 1604 |
| StyI | CCWWGG | 1 cut(s) | 759 |
| TaaI | ACNGT | 1 cut(s) | 1759 |
| TaiI | ACGT | 1 cut(s) | 329 |
| TaqI | TCGA | 9 cut(s) | 238, 294, 416, 443, 618, 796, 964, 1285, 1373 |
| TfiI | GAWTC | 8 cut(s) | 387, 479, 615, 1280, 1287, 1646, 1762, 1808 |
| Tru1I | TTAA | 5 cut(s) | 399, 818, 903, 989, 1178 |
| Tru9I | TTAA | 5 cut(s) | 399, 818, 903, 989, 1178 |
| TscAI | CASTG | 3 cut(s) | 139, 260, 915 |
| TseFI | GTSAC | 2 cut(s) | 257, 1159 |
| TseI | GCWGC | 2 cut(s) | 1404, 1697 |
| Tsp45I | GTSAC | 2 cut(s) | 257, 1159 |
| TspDTI | ATGAA | 5 cut(s) | 194, 524, 653, 1326, 1659 |
| TspRI | CASTG | 3 cut(s) | 139, 260, 915 |
| Tth111I | GACNNNGTC | 1 cut(s) | 500 |
| VpaK11BI | GGWCC | 1 cut(s) | 1351 |
| XapI | RAATTY | 5 cut(s) | 88, 278, 308, 410, 991 |
| XbaI | TCTAGA | 1 cut(s) | 578 |
| XceI | RCATGY | 2 cut(s) | 59, 869 |
| XhoI | CTCGAG | 1 cut(s) | 237 |
| XmiI | GTMKAC | 1 cut(s) | 36 |
| XspI | CTAG | 4 cut(s) | 233, 579, 690, 1173 |