RchiOBHm_Chr5g0051791

Peptide methionine sulfoxide reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0013036
Physical Location & Seq
Forward (+)
53161095 .. 53166138
5044 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 603 bp
ATGGCATTTCAATTTCATCATTTGAGTTTGAGGTTACCAACAACAACTAGCTGTATTTCTTCAAAAACCCAGTTCGGTTATGCCTTGAAACCCAAGAATTTAACATTTGGTAAACCCAAGAGGCTCTTCTTCTCGGTTCGTGCAATGGGTTCCTCTGCTTCTTCTCCAGACAGCAGCACTTCTCAAGAGACTGGTGACTATAAATCTATAAGTAATGACGAATGGAAAAATCGGCTTACGAAGGAACAGTTTTACATTACTCGTCAAAAGGGAACAGAGAGGGCGTTCACTGGGGAATACTGGAATACCAAAACTCCCGGAACTTACCATTGCATATGTTGTGACACCCCTCTTTTTGAATCATCTACTAAATTTGACAGTGGAACTGGTTGGCCATCTTATTACCAGCCGATTGGAGATAACGTGAAGTCCAAGTTAGACTTGTCCATTATCATCATGCCTCGCCAGGAAGTTCTTTGTGCCGTTTGTGATGCTCATCTTGGCCATGTCTTCGATGATGGTCCACCACCAACAGGAAAGCGCTACTGTATTAACAGTGCTTCCCTGAAACTACAACCAAAGCAGGAGTCAGCCTTACATTAA

Protein Analysis

200

Amino Acids

22.44

Weight (kDa)

8.92

Isoelectric Point (pI)

41.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SelR PF01641 79 - 193 2.1e-49 SelR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013036)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53670 AT1G53670
fragaria_vesca FvH4_3g28950 FvH4_3g28950
malus_domestica MD03G1251900.v1.1
prunus_persica Prupe.4G154300_v2.0.a1 Prupe.4G154300_v2.0.a1
pyrus_communis pycom03g19940
rosa_chinensis RchiOBHm_Chr5g0051791
rosa_laevigata RLG00000034855
rosa_multiflora Rmu_sc0000068.1_g000007
rosa_roxburghii Rroxscaffold_1G00027330
rosa_rugosa Rorug05G0276900
rosa_samantha Rh5AG349100 Rh5BG360200 Rh5CG385200 Rh5DG374900
rosa_wichuraiana Rw5G032930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 2 cut(s) 392, 502
AcsI RAATTY 2 cut(s) 97, 371
AfeI AGCGCT 1 cut(s) 542
AfiI CCNNNNNNNGG 1 cut(s) 533
AgsI TTSAA 4 cut(s) 11, 63, 88, 359
AjnI CCWGG 1 cut(s) 465
AjuI GAANNNNNNNTTGG 2 cut(s) 110, 142
AluBI AGCT 1 cut(s) 51
AluI AGCT 1 cut(s) 51
Alw26I GTCTC 1 cut(s) 182
Aor51HI AGCGCT 1 cut(s) 542
AoxI GGCC 2 cut(s) 392, 502
ApeKI GCWGC 1 cut(s) 174
ApoI RAATTY 2 cut(s) 97, 371
ArsI GACNNNNNNTTYG 1 cut(s) 572
AspLEI GCGC 1 cut(s) 543
AspS9I GGNCC 1 cut(s) 521
AsuC2I CCSGG 1 cut(s) 318
AsuHPI GGTGA 1 cut(s) 206
AvaII GGWCC 1 cut(s) 521
BalI TGGCCA 2 cut(s) 394, 504
BbsI GAAGAC 1 cut(s) 502
BbvI GCAGC 1 cut(s) 186
BccI CCATC 2 cut(s) 403, 512
BceAI ACGGC 1 cut(s) 467
BciT130I CCWGG 1 cut(s) 467
BcnI CCSGG 1 cut(s) 318
BcoDI GTCTC 1 cut(s) 182
BfaI CTAG 1 cut(s) 48
BfoI RGCGCY 1 cut(s) 544
BisI GCNGC 1 cut(s) 175
BlsI GCNGC 1 cut(s) 176
Bme1390I CCNGG 2 cut(s) 318, 467
Bme18I GGWCC 1 cut(s) 521
BmgT120I GGNCC 1 cut(s) 521
BmiI GGNNCC 1 cut(s) 151
BmrFI CCNGG 2 cut(s) 318, 467
BmrI ACTGGG 2 cut(s) 64, 300
BmsI GCATC 1 cut(s) 481
BmuI ACTGGG 2 cut(s) 64, 300
BpiI GAAGAC 1 cut(s) 502
BpmI CTGGAG 1 cut(s) 150
BpuEI CTTGAG 1 cut(s) 168
BpuMI CCSGG 1 cut(s) 318
BsaBI GATNNNNATC 1 cut(s) 495
BsaXI ACNNNNNCTCC 4 cut(s) 298, 328, 408, 438
Bsc4I CCNNNNNNNGG 1 cut(s) 533
Bse1I ACTGG 5 cut(s) 70, 196, 295, 305, 391
Bse3DI GCAATG 2 cut(s) 150, 328
Bse8I GATNNNNATC 1 cut(s) 495
BseBI CCWGG 1 cut(s) 467
BseJI GATNNNNATC 1 cut(s) 495
BseLI CCNNNNNNNGG 1 cut(s) 533
BseMI GCAATG 2 cut(s) 150, 328
BseNI ACTGG 5 cut(s) 70, 196, 295, 305, 391
BseXI GCAGC 1 cut(s) 186
BshFI GGCC 2 cut(s) 394, 504
BsiSI CCGG 1 cut(s) 318
BslI CCNNNNNNNGG 1 cut(s) 533
BsmAI GTCTC 1 cut(s) 182
BsnI GGCC 2 cut(s) 394, 504
BspANI GGCC 2 cut(s) 394, 504
BspLI GGNNCC 1 cut(s) 151
BspQI GCTCTTC 1 cut(s) 131
BsrDI GCAATG 2 cut(s) 150, 328
BsrI ACTGG 5 cut(s) 70, 196, 295, 305, 391
Bst2UI CCWGG 1 cut(s) 467
Bst4CI ACNGT 4 cut(s) 249, 380, 548, 557
Bst6I CTCTTC 1 cut(s) 131
BstEII GGTNACC 1 cut(s) 33
BstH2I RGCGCY 1 cut(s) 544
BstHHI GCGC 1 cut(s) 543
BstMAI GTCTC 1 cut(s) 182
BstNI CCWGG 1 cut(s) 467
BstPI GGTNACC 1 cut(s) 33
BstSCI CCNGG 2 cut(s) 316, 465
BstV1I GCAGC 1 cut(s) 186
BstV2I GAAGAC 1 cut(s) 502
BstXI CCANNNNNNTGG 1 cut(s) 413
BsuRI GGCC 2 cut(s) 394, 504
BtsIMutI CAGTG 3 cut(s) 288, 385, 562
CfoI GCGC 1 cut(s) 543
Cfr13I GGNCC 1 cut(s) 521
CviAII CATG 2 cut(s) 457, 506
CviJI RGCY 7 cut(s) 51, 124, 235, 394, 409, 504, 593
CviKI_1 RGCY 7 cut(s) 51, 124, 235, 394, 409, 504, 593
EaeI YGGCCR 2 cut(s) 392, 502
Eam1104I CTCTTC 1 cut(s) 131
EarI CTCTTC 1 cut(s) 131
Eco47I GGWCC 1 cut(s) 521
Eco47III AGCGCT 1 cut(s) 542
Eco91I GGTNACC 1 cut(s) 33
EcoO65I GGTNACC 1 cut(s) 33
EcoRII CCWGG 1 cut(s) 465
FaeI CATG 2 cut(s) 460, 509
FaiI YATR 7 cut(s) 81, 201, 209, 335, 337, 458, 507
FalI AAGNNNNNCTT 4 cut(s) 110, 142, 425, 457
FatI CATG 2 cut(s) 456, 505
FauNDI CATATG 1 cut(s) 335
Fnu4HI GCNGC 1 cut(s) 175
Fsp4HI GCNGC 1 cut(s) 175
FspBI CTAG 1 cut(s) 48
GlaI GCGC 1 cut(s) 542
GluI GCNGC 1 cut(s) 175
GsuI CTGGAG 1 cut(s) 150
HaeII RGCGCY 1 cut(s) 544
HaeIII GGCC 2 cut(s) 394, 504
HapII CCGG 1 cut(s) 318
HhaI GCGC 1 cut(s) 543
Hin1II CATG 2 cut(s) 460, 509
Hin6I GCGC 1 cut(s) 541
HinP1I GCGC 1 cut(s) 541
HinfI GANTC 2 cut(s) 359, 587
HpaII CCGG 1 cut(s) 318
HphI GGTGA 1 cut(s) 206
Hpy166II GTNNAC 3 cut(s) 113, 288, 524
Hpy188III TCNNGA 2 cut(s) 167, 185
Hpy8I GTNNAC 3 cut(s) 113, 288, 524
HpyAV CCTTC 1 cut(s) 235
HpyCH4III ACNGT 4 cut(s) 249, 380, 548, 557
HpyCH4IV ACGT 1 cut(s) 423
HpyCH4V TGCA 2 cut(s) 143, 333
HpySE526I ACGT 1 cut(s) 423
Hsp92II CATG 2 cut(s) 460, 509
HspAI GCGC 1 cut(s) 541
LguI GCTCTTC 1 cut(s) 131
Lsp1109I GCAGC 1 cut(s) 186
LweI GCATC 1 cut(s) 481
MaeI CTAG 1 cut(s) 48
MaeII ACGT 1 cut(s) 423
MaeIII GTNAC 3 cut(s) 33, 194, 341
MboII GAAGA 5 cut(s) 51, 118, 121, 153, 502
MlsI TGGCCA 2 cut(s) 394, 504
MluCI AATT 3 cut(s) 11, 97, 371
MluNI TGGCCA 2 cut(s) 394, 504
MlyI GAGTC 1 cut(s) 596
MnlI CCTC 6 cut(s) 24, 114, 163, 273, 360, 471
Mox20I TGGCCA 2 cut(s) 394, 504
MscI TGGCCA 2 cut(s) 394, 504
MseI TTAA 3 cut(s) 101, 552, 601
Msp20I TGGCCA 2 cut(s) 394, 504
MspI CCGG 1 cut(s) 318
MspR9I CCNGG 2 cut(s) 318, 467
MvaI CCWGG 1 cut(s) 467
NciI CCSGG 1 cut(s) 318
NdeI CATATG 1 cut(s) 335
NlaIII CATG 2 cut(s) 460, 509
NlaIV GGNNCC 1 cut(s) 151
NmuCI GTSAC 2 cut(s) 194, 341
PciSI GCTCTTC 1 cut(s) 131
PfeI GAWTC 1 cut(s) 359
PfoI TCCNGGA 1 cut(s) 316
PkrI GCNGC 1 cut(s) 176
PleI GAGTC 1 cut(s) 595
PpsI GAGTC 1 cut(s) 595
Psp6I CCWGG 1 cut(s) 465
PspEI GGTNACC 1 cut(s) 33
PspGI CCWGG 1 cut(s) 465
PspN4I GGNNCC 1 cut(s) 151
PspPI GGNCC 1 cut(s) 521
SapI GCTCTTC 1 cut(s) 131
SaqAI TTAA 3 cut(s) 101, 552, 601
SatI GCNGC 1 cut(s) 175
Sau96I GGNCC 1 cut(s) 521
SchI GAGTC 1 cut(s) 596
ScrFI CCNGG 2 cut(s) 318, 467
SetI ASST 3 cut(s) 35, 53, 426
SfaNI GCATC 1 cut(s) 481
SinI GGWCC 1 cut(s) 521
SmlI CTYRAG 1 cut(s) 183
SmoI CTYRAG 1 cut(s) 183
Sse9I AATT 3 cut(s) 11, 97, 371
SspMI CTAG 1 cut(s) 48
StyD4I CCNGG 2 cut(s) 316, 465
TaaI ACNGT 4 cut(s) 249, 380, 548, 557
TaiI ACGT 1 cut(s) 426
TaqI TCGA 1 cut(s) 513
TasI AATT 3 cut(s) 11, 97, 371
TfiI GAWTC 1 cut(s) 359
Tru1I TTAA 3 cut(s) 101, 552, 601
Tru9I TTAA 3 cut(s) 101, 552, 601
TscAI CASTG 3 cut(s) 295, 385, 562
TseFI GTSAC 2 cut(s) 194, 341
TseI GCWGC 1 cut(s) 174
Tsp45I GTSAC 2 cut(s) 194, 341
TspDTI ATGAA 1 cut(s) 5
TspRI CASTG 3 cut(s) 295, 385, 562
VpaK11BI GGWCC 1 cut(s) 521
XapI RAATTY 2 cut(s) 97, 371
XspI CTAG 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.