RchiOBHm_Chr5g0057361

Serine aminopeptidase, S33

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
61295372 .. 61300029
4658 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 195 bp
ATGGCTGAGGAAAGCTTTATGGATCGCCTAGGCACCTATATGCATGAATCATGCCCCAAGATTGACAAAGATTGCTGGCAAGGAAACTGTAATGAACCATTTCCAGCTTCTTTGGTGTTTGTAGTCCATGGATCAGATGAGTCCGCTTCGGTTGAAGATGCATTTGAGTTTGGCAAGATCATACCGGACCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

64

Amino Acids

7.2

Weight (kDa)

4.35

Isoelectric Point (pI)

55.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 32
AciI CCGC 1 cut(s) 144
AclWI GGATC 2 cut(s) 30, 139
AgsI TTSAA 1 cut(s) 155
AluBI AGCT 2 cut(s) 15, 107
AluI AGCT 2 cut(s) 15, 107
AlwI GGATC 2 cut(s) 30, 139
Asp700I GAANNNNTTC 1 cut(s) 99
AspA2I CCTAGG 1 cut(s) 28
AspS9I GGNCC 1 cut(s) 187
AvaII GGWCC 1 cut(s) 187
AvrII CCTAGG 1 cut(s) 28
BanI GGYRCC 1 cut(s) 32
BbvCI CCTCAGC 1 cut(s) 6
BfaI CTAG 1 cut(s) 29
BlnI CCTAGG 1 cut(s) 28
Bme18I GGWCC 1 cut(s) 187
BmgT120I GGNCC 1 cut(s) 187
BmiI GGNNCC 1 cut(s) 34
BmsI GCATC 1 cut(s) 148
Bpu10I CCTNAGC 1 cut(s) 6
BsaJI CCNNGG 2 cut(s) 28, 127
BsaWI WCCGGW 1 cut(s) 184
BseDI CCNNGG 2 cut(s) 28, 127
BshNI GGYRCC 1 cut(s) 32
BsiSI CCGG 1 cut(s) 185
Bsp143I GATC 3 cut(s) 22, 131, 177
Bsp19I CCATGG 1 cut(s) 127
BspACI CCGC 1 cut(s) 144
BspLI GGNNCC 1 cut(s) 34
BspPI GGATC 2 cut(s) 30, 139
BspT107I GGYRCC 1 cut(s) 32
BssECI CCNNGG 2 cut(s) 28, 127
BssMI GATC 3 cut(s) 22, 131, 177
BssT1I CCWWGG 2 cut(s) 28, 127
Bst4CI ACNGT 1 cut(s) 89
BstC8I GCNNGC 1 cut(s) 77
BstDEI CTNAG 1 cut(s) 6
BstDSI CCRYGG 1 cut(s) 127
BstKTI GATC 3 cut(s) 25, 134, 180
BstMBI GATC 3 cut(s) 22, 131, 177
BtgI CCRYGG 1 cut(s) 127
Cac8I GCNNGC 1 cut(s) 77
Cfr13I GGNCC 1 cut(s) 187
CviAII CATG 3 cut(s) 44, 51, 128
CviJI RGCY 3 cut(s) 5, 15, 107
CviKI_1 RGCY 3 cut(s) 5, 15, 107
DdeI CTNAG 1 cut(s) 6
DpnI GATC 3 cut(s) 24, 133, 179
DpnII GATC 3 cut(s) 22, 131, 177
Eco130I CCWWGG 2 cut(s) 28, 127
Eco47I GGWCC 1 cut(s) 187
EcoT14I CCWWGG 2 cut(s) 28, 127
EcoT22I ATGCAT 2 cut(s) 45, 163
ErhI CCWWGG 2 cut(s) 28, 127
FaeI CATG 3 cut(s) 47, 54, 131
FaiI YATR 7 cut(s) 20, 39, 41, 45, 52, 129, 182
FatI CATG 3 cut(s) 43, 50, 127
FspBI CTAG 1 cut(s) 29
HapII CCGG 1 cut(s) 185
Hin1II CATG 3 cut(s) 47, 54, 131
HindIII AAGCTT 1 cut(s) 13
HinfI GANTC 2 cut(s) 47, 140
HpaII CCGG 1 cut(s) 185
Hpy188I TCNGA 1 cut(s) 136
HpyCH4III ACNGT 1 cut(s) 89
HpyCH4V TGCA 2 cut(s) 43, 161
HpyF3I CTNAG 1 cut(s) 6
Hsp92II CATG 3 cut(s) 47, 54, 131
Kzo9I GATC 3 cut(s) 22, 131, 177
LpnPI CCDG 2 cut(s) 61, 117
LweI GCATC 1 cut(s) 148
MaeI CTAG 1 cut(s) 29
MalI GATC 3 cut(s) 24, 133, 179
MboI GATC 3 cut(s) 22, 131, 177
MboII GAAGA 1 cut(s) 167
MlyI GAGTC 1 cut(s) 149
Mph1103I ATGCAT 2 cut(s) 45, 163
MroXI GAANNNNTTC 1 cut(s) 99
MslI CAYNNNNRTG 1 cut(s) 38
MspI CCGG 1 cut(s) 185
NcoI CCATGG 1 cut(s) 127
NdeII GATC 3 cut(s) 22, 131, 177
NlaIII CATG 3 cut(s) 47, 54, 131
NlaIV GGNNCC 1 cut(s) 34
NsiI ATGCAT 2 cut(s) 45, 163
PdmI GAANNNNTTC 1 cut(s) 99
PfeI GAWTC 1 cut(s) 47
PleI GAGTC 1 cut(s) 148
PpsI GAGTC 1 cut(s) 148
PspN4I GGNNCC 1 cut(s) 34
PspPI GGNCC 1 cut(s) 187
RseI CAYNNNNRTG 1 cut(s) 38
Sau3AI GATC 3 cut(s) 22, 131, 177
Sau96I GGNCC 1 cut(s) 187
SchI GAGTC 1 cut(s) 149
SetI ASST 3 cut(s) 17, 38, 109
SfaNI GCATC 1 cut(s) 148
SgeI CNNG 9 cut(s) 41, 56, 63, 70, 88, 92, 116, 140, 187
SinI GGWCC 1 cut(s) 187
SmiMI CAYNNNNRTG 1 cut(s) 38
SsiI CCGC 1 cut(s) 144
SspMI CTAG 1 cut(s) 29
StyI CCWWGG 2 cut(s) 28, 127
TaaI ACNGT 1 cut(s) 89
TfiI GAWTC 1 cut(s) 47
TspDTI ATGAA 2 cut(s) 60, 108
VpaK11BI GGWCC 1 cut(s) 187
XmaJI CCTAGG 1 cut(s) 28
XmnI GAANNNNTTC 1 cut(s) 99
XspI CTAG 1 cut(s) 29
Zsp2I ATGCAT 2 cut(s) 45, 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.