Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0017817

Physical Location & Seq

Genomic Coordinates Reverse (-)

67668444 .. 67681267

Gene Structure 12824 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG484700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGACTCTGCCGGGTCACCCGATGGTTCTTCCTCAGAAAATCCACCACCCCAAAACGGATACCACCGCCTTTGCCCGCCTTCATCTCCACCATGCAAGTACAAGTCACTTCGCGCAAAGCTGCTCACTTGAGGTAATCTGTTGTTTCTCAGGGAATTGTAGGCTATTTGTGGTTGCTGCATCTGCAGCTCAATCAGCTGCAATTGTAGTACATGCTGGAACAAAAAGCTTACCTCTAAGCCTTGCAGGTGCTTTTTGTCGAGAGGGTCATCTTGGCTCATCAATCAGGATTAGAAGCTTCCCAACCTGCTCTAAATCAAATCGGGTGCTTGGTCCTACGATGAATGAATGCTCATGGATTGAATTACAACCACTCACTAGCCGAAAGCATCAGGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001522 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009982 GO:0009987 GO:0010467 GO:0016070 GO:0016853 GO:0016866 GO:0031119 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PseudoU_synth_2

Protein Analysis

132

Amino Acids

14.27

Weight (kDa)

9.4

Isoelectric Point (pI)

36.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0017817)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0057361
rosa_roxburghii	Rroxscaffold_1G00022910 Rroxscaffold_1G00048400 Rroxscaffold_7G00181030 Rroxscaffold_7G00181310
rosa_samantha	Rh3CG367700 Rh5BG462400 Rh5BG462500 Rh5CG484600 Rh5CG484700 Rh6CG036400 Rh6DG033400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	236
Acc36I	ACCTGC	2 cut(s)	236, 314
AccII	CGCG	1 cut(s)	113
AciI	CCGC	2 cut(s)	66, 76
AfaI	GTAC	2 cut(s)	100, 210
AfiI	CCNNNNNNNGG	1 cut(s)	55
AgsI	TTSAA	1 cut(s)	362
AluBI	AGCT	5 cut(s)	120, 188, 197, 228, 297
AluI	AGCT	5 cut(s)	120, 188, 197, 228, 297
ApeKI	GCWGC	4 cut(s)	120, 176, 185, 197
AspLEI	GCGC	1 cut(s)	115
AspS9I	GGNCC	1 cut(s)	332
AsuC2I	CCSGG	1 cut(s)	12
AsuHPI	GGTGA	1 cut(s)	8
AvaII	GGWCC	1 cut(s)	332
BbvI	GCAGC	4 cut(s)	107, 163, 184, 197
BccI	CCATC	1 cut(s)	16
BciVI	GTATCC	1 cut(s)	52
BcnI	CCSGG	1 cut(s)	12
BfaI	CTAG	1 cut(s)	378
BfmI	CTRYAG	1 cut(s)	183
BfuAI	ACCTGC	2 cut(s)	236, 314
BfuI	GTATCC	1 cut(s)	52
BisI	GCNGC	4 cut(s)	121, 177, 186, 198
BlsI	GCNGC	4 cut(s)	122, 178, 187, 199
Bme1390I	CCNGG	1 cut(s)	12
Bme18I	GGWCC	1 cut(s)	332
BmgT120I	GGNCC	1 cut(s)	332
BmrFI	CCNGG	1 cut(s)	12
BmsI	GCATC	1 cut(s)	188
BpuEI	CTTGAG	1 cut(s)	149
BpuMI	CCSGG	1 cut(s)	12
Bsc4I	CCNNNNNNNGG	1 cut(s)	55
BseLI	CCNNNNNNNGG	1 cut(s)	55
BseMII	CTCAG	2 cut(s)	47, 162
BseXI	GCAGC	4 cut(s)	107, 163, 184, 197
Bsh1236I	CGCG	1 cut(s)	113
BsiSI	CCGG	1 cut(s)	11
BslI	CCNNNNNNNGG	1 cut(s)	55
BsmI	GAATGC	1 cut(s)	353
BspACI	CCGC	2 cut(s)	66, 76
BspCNI	CTCAG	2 cut(s)	46, 161
BspFNI	CGCG	1 cut(s)	113
BspMAI	CTGCAG	1 cut(s)	187
BspMI	ACCTGC	2 cut(s)	236, 314
BstC8I	GCNNGC	1 cut(s)	76
BstDEI	CTNAG	3 cut(s)	33, 148, 236
BstEII	GGTNACC	1 cut(s)	14
BstFNI	CGCG	1 cut(s)	113
BstHHI	GCGC	1 cut(s)	115
BstMWI	GCNNNNNNNGC	3 cut(s)	182, 185, 194
BstNSI	RCATGY	1 cut(s)	215
BstPI	GGTNACC	1 cut(s)	14
BstSCI	CCNGG	1 cut(s)	10
BstSFI	CTRYAG	1 cut(s)	183
BstUI	CGCG	1 cut(s)	113
BstV1I	GCAGC	4 cut(s)	107, 163, 184, 197
BsuI	GTATCC	1 cut(s)	52
BveI	ACCTGC	2 cut(s)	236, 314
Cac8I	GCNNGC	1 cut(s)	76
CfoI	GCGC	1 cut(s)	115
Cfr13I	GGNCC	1 cut(s)	332
Csp6I	GTAC	2 cut(s)	99, 209
CspCI	CAANNNNNGTGG	2 cut(s)	52, 87
CviAII	CATG	3 cut(s)	92, 212, 354
CviJI	RGCY	9 cut(s)	120, 163, 188, 197, 228, 240, 276, 297, 381
CviKI_1	RGCY	9 cut(s)	120, 163, 188, 197, 228, 240, 276, 297, 381
CviQI	GTAC	2 cut(s)	99, 209
DdeI	CTNAG	3 cut(s)	33, 148, 236
Eco47I	GGWCC	1 cut(s)	332
Eco91I	GGTNACC	1 cut(s)	14
EcoO65I	GGTNACC	1 cut(s)	14
FaeI	CATG	3 cut(s)	95, 215, 357
FaiI	YATR	4 cut(s)	93, 213, 355, 397
FatI	CATG	3 cut(s)	91, 211, 353
FauI	CCCGC	1 cut(s)	83
Fnu4HI	GCNGC	4 cut(s)	121, 177, 186, 198
Fsp4HI	GCNGC	4 cut(s)	121, 177, 186, 198
FspBI	CTAG	1 cut(s)	378
GlaI	GCGC	1 cut(s)	114
GluI	GCNGC	4 cut(s)	121, 177, 186, 198
HapII	CCGG	1 cut(s)	11
HhaI	GCGC	1 cut(s)	115
Hin1II	CATG	3 cut(s)	95, 215, 357
Hin6I	GCGC	1 cut(s)	113
HinP1I	GCGC	1 cut(s)	113
HindIII	AAGCTT	2 cut(s)	226, 295
HinfI	GANTC	1 cut(s)	4
HpaII	CCGG	1 cut(s)	11
HphI	GGTGA	1 cut(s)	8
Hpy188I	TCNGA	1 cut(s)	36
Hpy188III	TCNNGA	2 cut(s)	260, 286
HpyAV	CCTTC	1 cut(s)	89
HpyCH4V	TGCA	5 cut(s)	95, 179, 185, 200, 245
HpyF10VI	GCNNNNNNNGC	3 cut(s)	182, 185, 194
HpyF3I	CTNAG	3 cut(s)	33, 148, 236
Hsp92II	CATG	3 cut(s)	95, 215, 357
HspAI	GCGC	1 cut(s)	113
LpnPI	CCDG	7 cut(s)	24, 135, 201, 231, 271, 319, 377
Lsp1109I	GCAGC	4 cut(s)	107, 163, 184, 197
LweI	GCATC	1 cut(s)	188
MaeI	CTAG	1 cut(s)	378
MaeIII	GTNAC	2 cut(s)	14, 104
MboII	GAAGA	1 cut(s)	20
MfeI	CAATTG	1 cut(s)	201
MluCI	AATT	3 cut(s)	154, 201, 362
MnlI	CCTC	4 cut(s)	42, 124, 243, 256
MspA1I	CMGCKG	1 cut(s)	197
MspI	CCGG	1 cut(s)	11
MspR9I	CCNGG	1 cut(s)	12
MunI	CAATTG	1 cut(s)	201
Mva1269I	GAATGC	1 cut(s)	353
MvnI	CGCG	1 cut(s)	113
MwoI	GCNNNNNNNGC	3 cut(s)	182, 185, 194
NciI	CCSGG	1 cut(s)	12
NlaIII	CATG	3 cut(s)	95, 215, 357
NmuCI	GTSAC	2 cut(s)	14, 104
NspI	RCATGY	1 cut(s)	215
PaqCI	CACCTGC	1 cut(s)	236
PctI	GAATGC	1 cut(s)	353
PkrI	GCNGC	4 cut(s)	122, 178, 187, 199
PspEI	GGTNACC	1 cut(s)	14
PspPI	GGNCC	1 cut(s)	332
PstI	CTGCAG	1 cut(s)	187
PvuII	CAGCTG	1 cut(s)	197
RsaI	GTAC	2 cut(s)	100, 210
RsaNI	GTAC	2 cut(s)	99, 209
SatI	GCNGC	4 cut(s)	121, 177, 186, 198
Sau96I	GGNCC	1 cut(s)	332
ScrFI	CCNGG	1 cut(s)	12
SfaNI	GCATC	1 cut(s)	188
SfcI	CTRYAG	1 cut(s)	183
SinI	GGWCC	1 cut(s)	332
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
Sse9I	AATT	3 cut(s)	154, 201, 362
SsiI	CCGC	2 cut(s)	66, 76
SspMI	CTAG	1 cut(s)	378
StyD4I	CCNGG	1 cut(s)	10
TaqI	TCGA	1 cut(s)	259
TasI	AATT	3 cut(s)	154, 201, 362
TatI	WGTACW	2 cut(s)	98, 208
TseFI	GTSAC	2 cut(s)	14, 104
TseI	GCWGC	4 cut(s)	120, 176, 185, 197
Tsp45I	GTSAC	2 cut(s)	14, 104
TspDTI	ATGAA	3 cut(s)	71, 356, 360
TspGWI	ACGGA	1 cut(s)	71
VpaK11BI	GGWCC	1 cut(s)	332
XceI	RCATGY	1 cut(s)	215
XspI	CTAG	1 cut(s)	378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.