Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0017817

Physical Location & Seq

Genomic Coordinates Reverse (-)

68361816 .. 68365917

Gene Structure 4102 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00048400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGCAGGGGCATGTTGAGAGTATAGATCCCCATGAGAAAATGATAACCTTGCCTATAAGTTTAAGTGCCTTGCAGGTGCTTTTTGACGAGAGGGTCATCTTGGCTCATCAATCAGGATTAGAAGCTTCCCAACCTGCTCTAACTCAATATCAGTCCATGGATCAGATGGGTCCACTTCGGTTGAAGATGCATTTGAGTTTGGCAAGATCATACCGAACCACTAAATACATATTGTACAAAGAGCTAATCATTGTTACACGTCGCATCAAGCCAAGTTGGACACAGTTGGTGGTGAACTTCATAAAGGGAGCTCTGCAGCAAAACAAGGCCTTTTCCAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001522 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009982 GO:0009987 GO:0010467 GO:0016070 GO:0016853 GO:0016866 GO:0031119 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PseudoU_synth_2

Protein Analysis

113

Amino Acids

12.95

Weight (kDa)

9.75

Isoelectric Point (pI)

49.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017817)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0057361
rosa_roxburghii	Rroxscaffold_1G00022910 Rroxscaffold_1G00048400 Rroxscaffold_7G00181030 Rroxscaffold_7G00181310
rosa_samantha	Rh3CG367700 Rh5BG462400 Rh5BG462500 Rh5CG484600 Rh5CG484700 Rh6CG036400 Rh6DG033400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	64
AasI	GACNNNNNNGTC	1 cut(s)	92
Acc36I	ACCTGC	2 cut(s)	64, 142
AclWI	GGATC	2 cut(s)	20, 168
AfaI	GTAC	1 cut(s)	236
AflIII	ACRYGT	1 cut(s)	257
AgsI	TTSAA	1 cut(s)	184
AjiI	CACGTC	1 cut(s)	260
AluBI	AGCT	3 cut(s)	125, 244, 311
AluI	AGCT	3 cut(s)	125, 244, 311
Alw21I	GWGCWC	1 cut(s)	313
AlwI	GGATC	2 cut(s)	20, 168
AoxI	GGCC	1 cut(s)	327
ApeKI	GCWGC	1 cut(s)	316
AspS9I	GGNCC	1 cut(s)	170
AsuHPI	GGTGA	1 cut(s)	304
AvaII	GGWCC	1 cut(s)	170
BanII	GRGCYC	1 cut(s)	313
Bbv12I	GWGCWC	1 cut(s)	313
BbvI	GCAGC	1 cut(s)	328
BccI	CCATC	1 cut(s)	160
BfaI	CTAG	1 cut(s)	340
BfmI	CTRYAG	1 cut(s)	314
BfuAI	ACCTGC	2 cut(s)	64, 142
BisI	GCNGC	1 cut(s)	317
BlsI	GCNGC	1 cut(s)	318
Bme18I	GGWCC	1 cut(s)	170
BmgBI	CACGTC	1 cut(s)	260
BmgT120I	GGNCC	1 cut(s)	170
BmiI	GGNNCC	1 cut(s)	171
BmsI	GCATC	2 cut(s)	177, 273
BsaJI	CCNNGG	1 cut(s)	156
BseDI	CCNNGG	1 cut(s)	156
BseXI	GCAGC	1 cut(s)	328
BshFI	GGCC	1 cut(s)	329
BsiHKAI	GWGCWC	1 cut(s)	313
BsnI	GGCC	1 cut(s)	329
Bsp1286I	GDGCHC	1 cut(s)	313
Bsp1407I	TGTACA	1 cut(s)	234
Bsp143I	GATC	3 cut(s)	25, 160, 206
Bsp19I	CCATGG	1 cut(s)	156
BspANI	GGCC	1 cut(s)	329
BspLI	GGNNCC	1 cut(s)	171
BspMAI	CTGCAG	1 cut(s)	318
BspMI	ACCTGC	2 cut(s)	64, 142
BspPI	GGATC	2 cut(s)	20, 168
BsrGI	TGTACA	1 cut(s)	234
BssECI	CCNNGG	1 cut(s)	156
BssMI	GATC	3 cut(s)	25, 160, 206
BssT1I	CCWWGG	1 cut(s)	156
Bst4CI	ACNGT	1 cut(s)	285
BstAUI	TGTACA	1 cut(s)	234
BstDSI	CCRYGG	1 cut(s)	156
BstKTI	GATC	3 cut(s)	28, 163, 209
BstMBI	GATC	3 cut(s)	25, 160, 206
BstNSI	RCATGY	1 cut(s)	14
BstSFI	CTRYAG	1 cut(s)	314
BstV1I	GCAGC	1 cut(s)	328
BstX2I	RGATCY	1 cut(s)	25
BstYI	RGATCY	1 cut(s)	25
BsuRI	GGCC	1 cut(s)	329
BtgI	CCRYGG	1 cut(s)	156
BtrI	CACGTC	1 cut(s)	260
BveI	ACCTGC	2 cut(s)	64, 142
Cfr13I	GGNCC	1 cut(s)	170
Csp6I	GTAC	1 cut(s)	235
CspCI	CAANNNNNGTGG	2 cut(s)	162, 197
CviAII	CATG	3 cut(s)	11, 32, 157
CviJI	RGCY	6 cut(s)	104, 125, 244, 271, 311, 329
CviKI_1	RGCY	6 cut(s)	104, 125, 244, 271, 311, 329
CviQI	GTAC	1 cut(s)	235
DpnI	GATC	3 cut(s)	27, 162, 208
DpnII	GATC	3 cut(s)	25, 160, 206
DrdI	GACNNNNNNGTC	1 cut(s)	92
DseDI	GACNNNNNNGTC	1 cut(s)	92
Ecl136II	GAGCTC	1 cut(s)	311
Eco130I	CCWWGG	1 cut(s)	156
Eco147I	AGGCCT	1 cut(s)	329
Eco24I	GRGCYC	1 cut(s)	313
Eco47I	GGWCC	1 cut(s)	170
Eco53kI	GAGCTC	1 cut(s)	311
EcoICRI	GAGCTC	1 cut(s)	311
EcoT14I	CCWWGG	1 cut(s)	156
EcoT22I	ATGCAT	1 cut(s)	192
EcoT38I	GRGCYC	1 cut(s)	313
ErhI	CCWWGG	1 cut(s)	156
FaeI	CATG	3 cut(s)	14, 35, 160
FaiI	YATR	8 cut(s)	12, 23, 33, 56, 158, 211, 230, 302
FatI	CATG	3 cut(s)	10, 31, 156
Fnu4HI	GCNGC	1 cut(s)	317
FriOI	GRGCYC	1 cut(s)	313
Fsp4HI	GCNGC	1 cut(s)	317
FspBI	CTAG	1 cut(s)	340
GluI	GCNGC	1 cut(s)	317
HaeIII	GGCC	1 cut(s)	329
Hin1II	CATG	3 cut(s)	14, 35, 160
HindIII	AAGCTT	1 cut(s)	123
HphI	GGTGA	1 cut(s)	304
Hpy166II	GTNNAC	2 cut(s)	173, 295
Hpy188I	TCNGA	1 cut(s)	165
Hpy188III	TCNNGA	1 cut(s)	114
Hpy8I	GTNNAC	2 cut(s)	173, 295
Hpy99I	CGWCG	1 cut(s)	264
HpyCH4III	ACNGT	1 cut(s)	285
HpyCH4IV	ACGT	1 cut(s)	259
HpyCH4V	TGCA	4 cut(s)	4, 73, 190, 316
HpySE526I	ACGT	1 cut(s)	259
Hsp92II	CATG	3 cut(s)	14, 35, 160
Kzo9I	GATC	3 cut(s)	25, 160, 206
LmnI	GCTCC	1 cut(s)	308
LpnPI	CCDG	3 cut(s)	59, 99, 147
Lsp1109I	GCAGC	1 cut(s)	328
LweI	GCATC	2 cut(s)	177, 273
MaeI	CTAG	1 cut(s)	340
MaeII	ACGT	1 cut(s)	259
MaeIII	GTNAC	1 cut(s)	253
MalI	GATC	3 cut(s)	27, 162, 208
MboI	GATC	3 cut(s)	25, 160, 206
MboII	GAAGA	1 cut(s)	196
MflI	RGATCY	1 cut(s)	25
MhlI	GDGCHC	1 cut(s)	313
MmeI	TCCRAC	1 cut(s)	257
MnlI	CCTC	1 cut(s)	84
Mph1103I	ATGCAT	1 cut(s)	192
MseI	TTAA	1 cut(s)	62
NcoI	CCATGG	1 cut(s)	156
NdeII	GATC	3 cut(s)	25, 160, 206
NlaIII	CATG	3 cut(s)	14, 35, 160
NlaIV	GGNNCC	1 cut(s)	171
NsiI	ATGCAT	1 cut(s)	192
NspI	RCATGY	1 cut(s)	14
PaqCI	CACCTGC	1 cut(s)	64
PceI	AGGCCT	1 cut(s)	329
PkrI	GCNGC	1 cut(s)	318
Psp124BI	GAGCTC	1 cut(s)	313
PspN4I	GGNNCC	1 cut(s)	171
PspPI	GGNCC	1 cut(s)	170
PstI	CTGCAG	1 cut(s)	318
PsuI	RGATCY	1 cut(s)	25
RsaI	GTAC	1 cut(s)	236
RsaNI	GTAC	1 cut(s)	235
SacI	GAGCTC	1 cut(s)	313
SaqAI	TTAA	1 cut(s)	62
SatI	GCNGC	1 cut(s)	317
Sau3AI	GATC	3 cut(s)	25, 160, 206
Sau96I	GGNCC	1 cut(s)	170
SduI	GDGCHC	1 cut(s)	313
SetI	ASST	7 cut(s)	50, 78, 127, 136, 246, 262, 313
SfaNI	GCATC	2 cut(s)	177, 273
SfcI	CTRYAG	1 cut(s)	314
SinI	GGWCC	1 cut(s)	170
SseBI	AGGCCT	1 cut(s)	329
SspMI	CTAG	1 cut(s)	340
SstI	GAGCTC	1 cut(s)	313
StuI	AGGCCT	1 cut(s)	329
StyI	CCWWGG	1 cut(s)	156
TaaI	ACNGT	1 cut(s)	285
TaiI	ACGT	1 cut(s)	262
TatI	WGTACW	1 cut(s)	234
Tru1I	TTAA	1 cut(s)	62
Tru9I	TTAA	1 cut(s)	62
TseI	GCWGC	1 cut(s)	316
TspDTI	ATGAA	1 cut(s)	289
VpaK11BI	GGWCC	1 cut(s)	170
XceI	RCATGY	1 cut(s)	14
XcmI	CCANNNNNNNNNTGG	1 cut(s)	163
XspI	CTAG	1 cut(s)	340
Zsp2I	ATGCAT	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.