Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0017817

Physical Location & Seq

Genomic Coordinates Reverse (-)

3386451 .. 3405362

Gene Structure 18912 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG033400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGATATCAATGCGGTATGCCTATCAATTTCTTGAGATACTGATCAGCTTTTGGAATCAGAAAGGAAGTTTCATTGATATTGAAAGTATTAATTTTCGGATGGCTGAGGAAAGCTTCGTGGATCGCCTAGGCACCTATATGCATGAATCATGCCCCAAGATTGACAAAGATTGCTGGCAAGCAAACTGTAATGAACCATTTCCAGATTCTTTGGTGTTTGTAGTCCATGGATCAGATGAGTCCACTCCGGTTGAAGATGCATTTGAGTTTGGCAAGATCGTACCGGGACCACTAAATACATATTATACAAAGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hydrolase_4

Protein Analysis

105

Amino Acids

12.16

Weight (kDa)

4.51

Isoelectric Point (pI)

47.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017817)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0057361
rosa_roxburghii	Rroxscaffold_1G00022910 Rroxscaffold_1G00048400 Rroxscaffold_7G00181030 Rroxscaffold_7G00181310
rosa_samantha	Rh3CG367700 Rh5BG462400 Rh5BG462500 Rh5CG484600 Rh5CG484700 Rh6CG036400 Rh6DG033400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	131
AciI	CCGC	1 cut(s)	13
AclWI	GGATC	2 cut(s)	129, 238
AfaI	GTAC	1 cut(s)	282
AgsI	TTSAA	2 cut(s)	83, 254
AluBI	AGCT	3 cut(s)	48, 114, 315
AluI	AGCT	3 cut(s)	48, 114, 315
AlwI	GGATC	2 cut(s)	129, 238
AseI	ATTAAT	1 cut(s)	90
Asp700I	GAANNNNTTC	1 cut(s)	198
AspA2I	CCTAGG	1 cut(s)	127
AspS9I	GGNCC	1 cut(s)	287
AsuC2I	CCSGG	1 cut(s)	285
AvaII	GGWCC	1 cut(s)	287
AvrII	CCTAGG	1 cut(s)	127
BanI	GGYRCC	1 cut(s)	131
BbvCI	CCTCAGC	1 cut(s)	105
BccI	CCATC	1 cut(s)	94
BclI	TGATCA	1 cut(s)	42
BcnI	CCSGG	1 cut(s)	285
BfaI	CTAG	1 cut(s)	128
BlnI	CCTAGG	1 cut(s)	127
Bme1390I	CCNGG	1 cut(s)	285
Bme18I	GGWCC	1 cut(s)	287
BmgT120I	GGNCC	1 cut(s)	287
BmiI	GGNNCC	2 cut(s)	133, 288
BmrFI	CCNGG	1 cut(s)	285
BmsI	GCATC	1 cut(s)	247
Bpu10I	CCTNAGC	1 cut(s)	105
BpuEI	CTTGAG	1 cut(s)	53
BpuMI	CCSGG	1 cut(s)	285
BsaBI	GATNNNNATC	1 cut(s)	41
BsaJI	CCNNGG	2 cut(s)	127, 226
BsaWI	WCCGGW	1 cut(s)	247
Bse8I	GATNNNNATC	1 cut(s)	41
BseDI	CCNNGG	2 cut(s)	127, 226
BseGI	GGATG	1 cut(s)	105
BseJI	GATNNNNATC	1 cut(s)	41
BseMII	CTCAG	1 cut(s)	96
BshNI	GGYRCC	1 cut(s)	131
BsiSI	CCGG	2 cut(s)	248, 284
BslFI	GGGAC	1 cut(s)	300
BsmFI	GGGAC	1 cut(s)	300
Bsp143I	GATC	4 cut(s)	42, 121, 230, 276
Bsp19I	CCATGG	1 cut(s)	226
BspACI	CCGC	1 cut(s)	13
BspCNI	CTCAG	1 cut(s)	97
BspLI	GGNNCC	2 cut(s)	133, 288
BspPI	GGATC	2 cut(s)	129, 238
BspT107I	GGYRCC	1 cut(s)	131
BssECI	CCNNGG	2 cut(s)	127, 226
BssMI	GATC	4 cut(s)	42, 121, 230, 276
BssT1I	CCWWGG	2 cut(s)	127, 226
Bst4CI	ACNGT	1 cut(s)	188
BstC8I	GCNNGC	2 cut(s)	176, 180
BstDEI	CTNAG	1 cut(s)	105
BstDSI	CCRYGG	1 cut(s)	226
BstF5I	GGATG	1 cut(s)	105
BstKTI	GATC	4 cut(s)	45, 124, 233, 279
BstMBI	GATC	4 cut(s)	42, 121, 230, 276
BstSCI	CCNGG	1 cut(s)	283
BtgI	CCRYGG	1 cut(s)	226
BtsCI	GGATG	1 cut(s)	105
Cac8I	GCNNGC	2 cut(s)	176, 180
Cfr13I	GGNCC	1 cut(s)	287
Csp6I	GTAC	1 cut(s)	281
CspCI	CAANNNNNGTGG	2 cut(s)	232, 267
CviAII	CATG	3 cut(s)	143, 150, 227
CviJI	RGCY	4 cut(s)	48, 104, 114, 315
CviKI_1	RGCY	4 cut(s)	48, 104, 114, 315
CviQI	GTAC	1 cut(s)	281
DdeI	CTNAG	1 cut(s)	105
DpnI	GATC	4 cut(s)	44, 123, 232, 278
DpnII	GATC	4 cut(s)	42, 121, 230, 276
Eco130I	CCWWGG	2 cut(s)	127, 226
Eco32I	GATATC	1 cut(s)	6
Eco47I	GGWCC	1 cut(s)	287
EcoRV	GATATC	1 cut(s)	6
EcoT14I	CCWWGG	2 cut(s)	127, 226
EcoT22I	ATGCAT	2 cut(s)	144, 262
ErhI	CCWWGG	2 cut(s)	127, 226
FaeI	CATG	3 cut(s)	146, 153, 230
FaiI	YATR	8 cut(s)	18, 138, 140, 144, 151, 228, 301, 306
FaqI	GGGAC	1 cut(s)	300
FatI	CATG	3 cut(s)	142, 149, 226
FbaI	TGATCA	1 cut(s)	42
FokI	GGATG	1 cut(s)	112
FspBI	CTAG	1 cut(s)	128
HapII	CCGG	2 cut(s)	248, 284
Hin1II	CATG	3 cut(s)	146, 153, 230
HindIII	AAGCTT	1 cut(s)	112
HinfI	GANTC	4 cut(s)	55, 146, 206, 239
HpaII	CCGG	2 cut(s)	248, 284
Hpy166II	GTNNAC	1 cut(s)	243
Hpy188I	TCNGA	3 cut(s)	60, 99, 235
Hpy188III	TCNNGA	2 cut(s)	32, 203
Hpy8I	GTNNAC	1 cut(s)	243
HpyCH4III	ACNGT	1 cut(s)	188
HpyCH4V	TGCA	2 cut(s)	142, 260
HpyF3I	CTNAG	1 cut(s)	105
Hsp92II	CATG	3 cut(s)	146, 153, 230
Ksp22I	TGATCA	1 cut(s)	42
Kzo9I	GATC	4 cut(s)	42, 121, 230, 276
LpnPI	CCDG	4 cut(s)	160, 216, 261, 297
LweI	GCATC	1 cut(s)	247
MaeI	CTAG	1 cut(s)	128
MalI	GATC	4 cut(s)	44, 123, 232, 278
MboI	GATC	4 cut(s)	42, 121, 230, 276
MboII	GAAGA	1 cut(s)	266
MluCI	AATT	2 cut(s)	26, 91
MlyI	GAGTC	1 cut(s)	248
MnlI	CCTC	1 cut(s)	100
Mph1103I	ATGCAT	2 cut(s)	144, 262
MroXI	GAANNNNTTC	1 cut(s)	198
MseI	TTAA	1 cut(s)	90
MslI	CAYNNNNRTG	1 cut(s)	137
MspI	CCGG	2 cut(s)	248, 284
MspR9I	CCNGG	1 cut(s)	285
NciI	CCSGG	1 cut(s)	285
NcoI	CCATGG	1 cut(s)	226
NdeII	GATC	4 cut(s)	42, 121, 230, 276
NlaIII	CATG	3 cut(s)	146, 153, 230
NlaIV	GGNNCC	2 cut(s)	133, 288
NsiI	ATGCAT	2 cut(s)	144, 262
PdmI	GAANNNNTTC	1 cut(s)	198
PfeI	GAWTC	3 cut(s)	55, 146, 206
PleI	GAGTC	1 cut(s)	247
PpsI	GAGTC	1 cut(s)	247
PshBI	ATTAAT	1 cut(s)	90
PspN4I	GGNNCC	2 cut(s)	133, 288
PspPI	GGNCC	1 cut(s)	287
RsaI	GTAC	1 cut(s)	282
RsaNI	GTAC	1 cut(s)	281
RseI	CAYNNNNRTG	1 cut(s)	137
SaqAI	TTAA	1 cut(s)	90
Sau3AI	GATC	4 cut(s)	42, 121, 230, 276
Sau96I	GGNCC	1 cut(s)	287
SchI	GAGTC	1 cut(s)	248
ScrFI	CCNGG	1 cut(s)	285
SetI	ASST	4 cut(s)	50, 116, 137, 317
SfaNI	GCATC	1 cut(s)	247
SinI	GGWCC	1 cut(s)	287
SmiMI	CAYNNNNRTG	1 cut(s)	137
SmlI	CTYRAG	1 cut(s)	32
SmoI	CTYRAG	1 cut(s)	32
Sse9I	AATT	2 cut(s)	26, 91
SsiI	CCGC	1 cut(s)	13
SspMI	CTAG	1 cut(s)	128
StyD4I	CCNGG	1 cut(s)	283
StyI	CCWWGG	2 cut(s)	127, 226
TaaI	ACNGT	1 cut(s)	188
TasI	AATT	2 cut(s)	26, 91
TfiI	GAWTC	3 cut(s)	55, 146, 206
Tru1I	TTAA	1 cut(s)	90
Tru9I	TTAA	1 cut(s)	90
TspDTI	ATGAA	3 cut(s)	61, 159, 207
VpaK11BI	GGWCC	1 cut(s)	287
VspI	ATTAAT	1 cut(s)	90
XmaJI	CCTAGG	1 cut(s)	127
XmnI	GAANNNNTTC	1 cut(s)	198
XspI	CTAG	1 cut(s)	128
Zsp2I	ATGCAT	2 cut(s)	144, 262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.