Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004353

Physical Location & Seq

Genomic Coordinates Reverse (-)

65365333 .. 65371018

Gene Structure 5686 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1359 bp

ATGCAGCAGCAGCACCAACAACATCATCTGGGTTTTGAAGAACCACCAAGTAGCAGTAAGGCGAGTCTATTGATTCGTCACCTTCCAGAAGCCATTCCTGAAGAGACCCTGTTCCGCTTACTGTCCCACTATGGCGCTTCTTCTGTCCGCTCTTGCTCTCCTACCGGCAGGATGAGAAACTGTGCTTTTGTGGATTTCCAAACCGAAGGCTTGGCTTACCAAGCACAGCGTCAGTTGAATGGGCTGAGGTTTCTTGGGAAGGTGTTAAAAGTGGAGAGGGCTACTAGCAATAGTGATAAGCCATTGCAGGATGGCAACAAGGATTCGGTTTCGTTGCCTCCCACTTCCACGTCATCTTCGGGGTACAATCCTACCGTCAAAAGGGAGACTCGGGAAACTGAAGTTTCAAGATCAGAGCCTATTGCCCCGAGGCTTGGTGTAGATTACTGCTTTCCTCCTCACCTTGAGTATGCTTACCCACCACCAGATGGAAATATTCTGACCAACATTGTAAATGCTCTAATTGCTGTTCCTCGCTTTTATACTCAGGTTTTGCACTTGATGAACAAAATGAATATTCCAGCTCCATTTCGCATGGCTCTTCCCTCTCCACCTCTACCACCTGCAGCTCCCGTGCCATTTCCCCCACCTCCCCCTCCTCTAGATGCAAAGCCTCCCTCAGCAGATATATCAAGTGACGAGTCTGAAATGGAGTCTTCAGATGAGGAGGCCTCTAGAGGAGCTTCAAGAGGAAAGAAGCGTGTCAAACGGGAATCTATTCTTGGTCCTGCAGTTGATAAAGGTGTAGCACATGAAGATGTTGGATTGAAACAAGCTATTCTAGTCCCAAAAGAGATGCCAATGATAAAGAAGAAGAATCCTCTGCTACAGATAACAATTGCCCAGAAAGTTGCTAACAATGAGCACAAAGATGATAGCACTACCAAAGTAGAAGAGCTTCCGGAGACTGAGAGTTCAGTTATTAACCCTTTTGCAACTCCAGAAGAACTAGAAAGAGGAAAGTTGCCTCCAGAAGAAATATTATCGCTTCCAATGTTTAAGAACTATACTGCCGGGACTCCTGCCCCCGTGTTGTATATAAAGAACTTGGCAAAGGACATTGTTGGTGATGACTTCTACTACATATTTGGGTCATTATTTGGAAGCATTGATGCAGCCAAATCTGCTCTGAGCGTGAAGCTTATGCAGGAAGGACGAATGAGGGGCCAAGCTTTCATAACATTTCCTTCAGTTGAACAAAGCCAATATGCTTTGAATCTAGTGAATGGGTATGTGTTCAAAGGCAAACCAATGATCATCCAGTTTGGCCGTAATCCTGCAGCTGTTAAAGCAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005689 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009791 GO:0009987 GO:0010229 GO:0010467 GO:0016070 GO:0016071 GO:0017069 GO:0022414 GO:0030626 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0036002 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090567 GO:0097157 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

452

Amino Acids

49.72

Weight (kDa)

7.7

Isoelectric Point (pI)

59.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	23 - 90	4.9e-10	RNA recognition motif
RRM_1	PF00076	365 - 437	4.6e-09	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004353)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09230 AT1G09230 AT1G09230
fragaria_vesca	FvH4_3g32950 FvH4_3g32950 FvH4_3g32950 FvH4_3g32950 FvH4_3g32950 FvH4_3g32950 FvH4_3g32950 FvH4_3g32950 FvH4_3g32950 FvH4_3g32950 FvH4_3g32950
malus_domestica	MD03G1112900.v1.1
prunus_persica	Prupe.6G097200_v2.0.a1 Prupe.6G097200_v2.0.a1 Prupe.6G097200_v2.0.a1 Prupe.6G097200_v2.0.a1 Prupe.6G097200_v2.0.a1 Prupe.6G097200_v2.0.a1 Prupe.6G097200_v2.0.a1 Prupe.6G097200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0060221
rosa_laevigata	RLG00000035347
rosa_roxburghii	Rroxscaffold_1G00020500
rosa_rugosa	Rorug05G0328400
rosa_samantha	Rh5AG392600 Rh5BG405100 Rh5CG429200 Rh5DG420700
rosa_wichuraiana	Rw5G036990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	631
Acc36I	ACCTGC	1 cut(s)	631
AccB7I	CCANNNNNTGG	1 cut(s)	488
AccBSI	CCGCTC	1 cut(s)	150
AccIII	TCCGGA	1 cut(s)	961
AciI	CCGC	2 cut(s)	115, 148
AcoI	YGGCCR	1 cut(s)	1327
AcuI	CTGAAG	4 cut(s)	120, 420, 702, 1233
AfaI	GTAC	1 cut(s)	365
AfiI	CCNNNNNNNGG	3 cut(s)	381, 434, 488
AgsI	TTSAA	8 cut(s)	38, 238, 408, 747, 829, 1256, 1276, 1300
AjiI	CACGTC	1 cut(s)	351
AjuI	GAANNNNNNNTTGG	2 cut(s)	765, 797
AluBI	AGCT	8 cut(s)	584, 629, 743, 836, 958, 1201, 1232, 1343
AluI	AGCT	8 cut(s)	584, 629, 743, 836, 958, 1201, 1232, 1343
Alw21I	GWGCWC	1 cut(s)	927
Alw26I	GTCTC	3 cut(s)	98, 380, 959
Ama87I	CYCGRG	2 cut(s)	390, 427
Aor13HI	TCCGGA	1 cut(s)	961
AoxI	GGCC	3 cut(s)	729, 1225, 1327
ApeKI	GCWGC	6 cut(s)	4, 7, 10, 626, 1175, 1340
Asp700I	GAANNNNTTC	3 cut(s)	93, 777, 957
AspLEI	GCGC	1 cut(s)	137
AspS9I	GGNCC	2 cut(s)	785, 1225
AsuC2I	CCSGG	1 cut(s)	1075
AsuHPI	GGTGA	3 cut(s)	71, 452, 1139
AvaI	CYCGRG	2 cut(s)	390, 427
AvaII	GGWCC	1 cut(s)	785
BarI	GAAGNNNNNNTAC	2 cut(s)	942, 974
BbsI	GAAGAC	1 cut(s)	708
Bbv12I	GWGCWC	1 cut(s)	927
BbvCI	CCTCAGC	2 cut(s)	245, 679
BbvI	GCAGC	6 cut(s)	16, 19, 22, 638, 1187, 1352
BccI	CCATC	2 cut(s)	305, 482
BceAI	ACGGC	1 cut(s)	1314
BclI	TGATCA	1 cut(s)	1314
BcnI	CCSGG	1 cut(s)	1075
BcoDI	GTCTC	3 cut(s)	98, 380, 959
BfaI	CTAG	6 cut(s)	285, 662, 735, 842, 1010, 1280
BfmI	CTRYAG	4 cut(s)	624, 789, 887, 1338
BfoI	RGCGCY	1 cut(s)	138
BfuAI	ACCTGC	1 cut(s)	631
BisI	GCNGC	6 cut(s)	5, 8, 11, 627, 1176, 1341
BlsI	GCNGC	6 cut(s)	6, 9, 12, 628, 1177, 1342
Bme1390I	CCNGG	1 cut(s)	1075
Bme18I	GGWCC	1 cut(s)	785
BmeT110I	CYCGRG	2 cut(s)	390, 427
BmgBI	CACGTC	1 cut(s)	351
BmgT120I	GGNCC	2 cut(s)	785, 1225
BmiI	GGNNCC	1 cut(s)	1226
BmrFI	CCNGG	1 cut(s)	1075
BmsI	GCATC	3 cut(s)	655, 846, 1162
BpiI	GAAGAC	1 cut(s)	708
BplI	GAGNNNNNCTC	2 cut(s)	716, 748
BpmI	CTGGAG	2 cut(s)	984, 1014
Bpu10I	CCTNAGC	2 cut(s)	245, 679
BpuEI	CTTGAG	1 cut(s)	485
BpuMI	CCSGG	1 cut(s)	1075
BsaI	GGTCTC	1 cut(s)	98
BsaJI	CCNNGG	1 cut(s)	428
BsaWI	WCCGGW	1 cut(s)	961
Bsc4I	CCNNNNNNNGG	3 cut(s)	381, 434, 488
Bse118I	RCCGGY	1 cut(s)	164
Bse1I	ACTGG	1 cut(s)	1321
Bse3DI	GCAATG	1 cut(s)	302
BseAI	TCCGGA	1 cut(s)	961
BseDI	CCNNGG	1 cut(s)	428
BseGI	GGATG	3 cut(s)	177, 316, 1317
BseLI	CCNNNNNNNGG	3 cut(s)	381, 434, 488
BseMI	GCAATG	1 cut(s)	302
BseMII	CTCAG	5 cut(s)	236, 560, 693, 960, 1181
BseNI	ACTGG	1 cut(s)	1321
BseRI	GAGGAG	4 cut(s)	447, 648, 740, 753
BseXI	GCAGC	6 cut(s)	16, 19, 22, 638, 1187, 1352
BshFI	GGCC	3 cut(s)	731, 1227, 1329
BsiHKAI	GWGCWC	1 cut(s)	927
BsiHKCI	CYCGRG	2 cut(s)	390, 427
BsiSI	CCGG	3 cut(s)	165, 962, 1074
BslFI	GGGAC	3 cut(s)	109, 830, 1090
BslI	CCNNNNNNNGG	3 cut(s)	381, 434, 488
BsmAI	GTCTC	3 cut(s)	98, 380, 959
BsmFI	GGGAC	3 cut(s)	109, 830, 1090
BsnI	GGCC	3 cut(s)	731, 1227, 1329
Bso31I	GGTCTC	1 cut(s)	98
BsoBI	CYCGRG	2 cut(s)	390, 427
Bsp1286I	GDGCHC	1 cut(s)	927
Bsp13I	TCCGGA	1 cut(s)	961
Bsp143I	GATC	2 cut(s)	410, 1314
BspACI	CCGC	2 cut(s)	115, 148
BspANI	GGCC	3 cut(s)	731, 1227, 1329
BspCNI	CTCAG	5 cut(s)	237, 559, 692, 961, 1182
BspEI	TCCGGA	1 cut(s)	961
BspLI	GGNNCC	1 cut(s)	1226
BspMAI	CTGCAG	3 cut(s)	628, 793, 1342
BspMI	ACCTGC	1 cut(s)	631
BspQI	GCTCTTC	2 cut(s)	606, 948
BspTNI	GGTCTC	1 cut(s)	98
BsrBI	CCGCTC	1 cut(s)	150
BsrDI	GCAATG	1 cut(s)	302
BsrFI	RCCGGY	1 cut(s)	164
BsrI	ACTGG	1 cut(s)	1321
BssAI	RCCGGY	1 cut(s)	164
BssECI	CCNNGG	1 cut(s)	428
BssMI	GATC	2 cut(s)	410, 1314
Bst4CI	ACNGT	3 cut(s)	123, 182, 376
Bst6I	CTCTTC	3 cut(s)	96, 606, 948
BstDEI	CTNAG	5 cut(s)	245, 546, 679, 969, 1190
BstF5I	GGATG	3 cut(s)	177, 316, 1317
BstH2I	RGCGCY	1 cut(s)	138
BstHHI	GCGC	1 cut(s)	137
BstKTI	GATC	2 cut(s)	413, 1317
BstMAI	GTCTC	3 cut(s)	98, 380, 959
BstMBI	GATC	2 cut(s)	410, 1314
BstMWI	GCNNNNNNNGC	5 cut(s)	10, 221, 524, 1184, 1349
BstSCI	CCNGG	1 cut(s)	1073
BstSFI	CTRYAG	4 cut(s)	624, 789, 887, 1338
BstV1I	GCAGC	6 cut(s)	16, 19, 22, 638, 1187, 1352
BstV2I	GAAGAC	1 cut(s)	708
BsuRI	GGCC	3 cut(s)	731, 1227, 1329
BtrI	CACGTC	1 cut(s)	351
BtsCI	GGATG	3 cut(s)	177, 316, 1317
BveI	ACCTGC	1 cut(s)	631
CfoI	GCGC	1 cut(s)	137
Cfr10I	RCCGGY	1 cut(s)	164
Cfr13I	GGNCC	2 cut(s)	785, 1225
CseI	GACGC	1 cut(s)	218
Csp6I	GTAC	1 cut(s)	364
CviAII	CATG	2 cut(s)	595, 812
CviQI	GTAC	1 cut(s)	364
DdeI	CTNAG	5 cut(s)	245, 546, 679, 969, 1190
DpnI	GATC	2 cut(s)	412, 1316
DpnII	GATC	2 cut(s)	410, 1314
EaeI	YGGCCR	1 cut(s)	1327
Eam1104I	CTCTTC	3 cut(s)	96, 606, 948
EarI	CTCTTC	3 cut(s)	96, 606, 948
Eco147I	AGGCCT	1 cut(s)	731
Eco31I	GGTCTC	1 cut(s)	98
Eco47I	GGWCC	1 cut(s)	785
Eco57I	CTGAAG	4 cut(s)	120, 420, 702, 1233
Eco88I	CYCGRG	2 cut(s)	390, 427
FaeI	CATG	2 cut(s)	598, 815
FaqI	GGGAC	3 cut(s)	109, 830, 1090
FatI	CATG	2 cut(s)	594, 811
FbaI	TGATCA	1 cut(s)	1314
Fnu4HI	GCNGC	6 cut(s)	5, 8, 11, 627, 1176, 1341
FokI	GGATG	3 cut(s)	184, 323, 1304
Fsp4HI	GCNGC	6 cut(s)	5, 8, 11, 627, 1176, 1341
FspBI	CTAG	6 cut(s)	285, 662, 735, 842, 1010, 1280
GlaI	GCGC	1 cut(s)	136
GluI	GCNGC	6 cut(s)	5, 8, 11, 627, 1176, 1341
GsuI	CTGGAG	2 cut(s)	984, 1014
HaeII	RGCGCY	1 cut(s)	138
HaeIII	GGCC	3 cut(s)	731, 1227, 1329
HapII	CCGG	3 cut(s)	165, 962, 1074
HgaI	GACGC	1 cut(s)	218
HhaI	GCGC	1 cut(s)	137
Hin1II	CATG	2 cut(s)	598, 815
Hin6I	GCGC	1 cut(s)	135
HinP1I	GCGC	1 cut(s)	135
HindIII	AAGCTT	2 cut(s)	1199, 1230
HpaII	CCGG	3 cut(s)	165, 962, 1074
HphI	GGTGA	3 cut(s)	71, 452, 1139
Hpy188I	TCNGA	5 cut(s)	415, 501, 706, 721, 1191
HpyAV	CCTTC	5 cut(s)	92, 200, 253, 1205, 1257
HpyCH4III	ACNGT	3 cut(s)	123, 182, 376
HpyCH4IV	ACGT	1 cut(s)	350
HpyF10VI	GCNNNNNNNGC	5 cut(s)	10, 221, 524, 1184, 1349
HpyF3I	CTNAG	5 cut(s)	245, 546, 679, 969, 1190
HpySE526I	ACGT	1 cut(s)	350
Hsp92II	CATG	2 cut(s)	598, 815
HspAI	GCGC	1 cut(s)	135
Kpn2I	TCCGGA	1 cut(s)	961
Ksp22I	TGATCA	1 cut(s)	1314
Kzo9I	GATC	2 cut(s)	410, 1314
LguI	GCTCTTC	2 cut(s)	606, 948
LmnI	GCTCC	3 cut(s)	589, 634, 740
Lsp1109I	GCAGC	6 cut(s)	16, 19, 22, 638, 1187, 1352
LweI	GCATC	3 cut(s)	655, 846, 1162
MaeI	CTAG	6 cut(s)	285, 662, 735, 842, 1010, 1280
MaeII	ACGT	1 cut(s)	350
MaeIII	GTNAC	2 cut(s)	77, 695
MalI	GATC	2 cut(s)	412, 1316
MbiI	CCGCTC	1 cut(s)	150
MboI	GATC	2 cut(s)	410, 1314
MfeI	CAATTG	1 cut(s)	897
MhlI	GDGCHC	1 cut(s)	927
MluCI	AATT	2 cut(s)	522, 897
MlyI	GAGTC	5 cut(s)	73, 382, 710, 722, 1072
MmeI	TCCRAC	1 cut(s)	802
MroI	TCCGGA	1 cut(s)	961
MroXI	GAANNNNTTC	3 cut(s)	93, 777, 957
MseI	TTAA	5 cut(s)	266, 984, 1059, 1347, 1357
MslI	CAYNNNNRTG	2 cut(s)	816, 930
MspA1I	CMGCKG	1 cut(s)	1343
MspI	CCGG	3 cut(s)	165, 962, 1074
MspR9I	CCNGG	1 cut(s)	1075
MunI	CAATTG	1 cut(s)	897
MwoI	GCNNNNNNNGC	5 cut(s)	10, 221, 524, 1184, 1349
NciI	CCSGG	1 cut(s)	1075
NdeII	GATC	2 cut(s)	410, 1314
NlaIII	CATG	2 cut(s)	598, 815
NlaIV	GGNNCC	1 cut(s)	1226
NmuCI	GTSAC	2 cut(s)	77, 695
PaqCI	CACCTGC	1 cut(s)	631
PceI	AGGCCT	1 cut(s)	731
PciSI	GCTCTTC	2 cut(s)	606, 948
PdmI	GAANNNNTTC	3 cut(s)	93, 777, 957
PfeI	GAWTC	5 cut(s)	73, 323, 773, 877, 1276
PflMI	CCANNNNNTGG	1 cut(s)	488
PkrI	GCNGC	6 cut(s)	6, 9, 12, 628, 1177, 1342
PleI	GAGTC	5 cut(s)	72, 382, 709, 721, 1072
PpsI	GAGTC	5 cut(s)	72, 382, 709, 721, 1072
PspN4I	GGNNCC	1 cut(s)	1226
PspPI	GGNCC	2 cut(s)	785, 1225
PstI	CTGCAG	3 cut(s)	628, 793, 1342
PvuII	CAGCTG	1 cut(s)	1343
RsaI	GTAC	1 cut(s)	365
RsaNI	GTAC	1 cut(s)	364
RseI	CAYNNNNRTG	2 cut(s)	816, 930
SapI	GCTCTTC	2 cut(s)	606, 948
SaqAI	TTAA	5 cut(s)	266, 984, 1059, 1347, 1357
SatI	GCNGC	6 cut(s)	5, 8, 11, 627, 1176, 1341
Sau3AI	GATC	2 cut(s)	410, 1314
Sau96I	GGNCC	2 cut(s)	785, 1225
SchI	GAGTC	5 cut(s)	73, 382, 710, 722, 1072
ScrFI	CCNGG	1 cut(s)	1075
SduI	GDGCHC	1 cut(s)	927
SfaNI	GCATC	3 cut(s)	655, 846, 1162
SfcI	CTRYAG	4 cut(s)	624, 789, 887, 1338
SinI	GGWCC	1 cut(s)	785
SmiMI	CAYNNNNRTG	2 cut(s)	816, 930
SmlI	CTYRAG	1 cut(s)	464
SmoI	CTYRAG	1 cut(s)	464
Sse9I	AATT	2 cut(s)	522, 897
SseBI	AGGCCT	1 cut(s)	731
SsiI	CCGC	2 cut(s)	115, 148
SspI	AATATT	3 cut(s)	496, 577, 1041
SspMI	CTAG	6 cut(s)	285, 662, 735, 842, 1010, 1280
StuI	AGGCCT	1 cut(s)	731
StyD4I	CCNGG	1 cut(s)	1073
TaaI	ACNGT	3 cut(s)	123, 182, 376
TaiI	ACGT	1 cut(s)	353
TasI	AATT	2 cut(s)	522, 897
TfiI	GAWTC	5 cut(s)	73, 323, 773, 877, 1276
Tru1I	TTAA	5 cut(s)	266, 984, 1059, 1347, 1357
Tru9I	TTAA	5 cut(s)	266, 984, 1059, 1347, 1357
TseFI	GTSAC	2 cut(s)	77, 695
TseI	GCWGC	6 cut(s)	4, 7, 10, 626, 1175, 1340
Tsp45I	GTSAC	2 cut(s)	77, 695
TspDTI	ATGAA	4 cut(s)	578, 587, 828, 1225
Van91I	CCANNNNNTGG	1 cut(s)	488
VpaK11BI	GGWCC	1 cut(s)	785
XbaI	TCTAGA	2 cut(s)	661, 734
XmnI	GAANNNNTTC	3 cut(s)	93, 777, 957
XspI	CTAG	6 cut(s)	285, 662, 735, 842, 1010, 1280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.