RchiOBHm_Chr5g0071661

May be involved in both secretory and endocytic intracellular trafficking in the endosomal prevacuolar compartments

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0018013
Physical Location & Seq
Reverse (-)
77447081 .. 77448237
1157 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 642 bp
ATGTCCTCGTCTTCCTCGATCCCGATGTCCTCCTCCTCCTCCTCCTCGCAACAGTCCACACAGCCACGCTCATTTCCGCTGCCGCCGTTCCGATCCATCCTCACGCGCCTCTCCCGCTTCTCCCGCAACGCGCTCGTCAACCAACGCCCCTGGACCGAGCTCGTCGACCGCACCGCCTTCACTCGACCGTCCTCCTTCTCCGACGCGGCCTCGCGCGTGAGGAAAAACGCCGCCTATTTCCGCGTCAACTACCTGATCGTGCTCGCCGTCGTCCTCGCCTACTCGCTCCTCTCCCACCCCTTCACTCTCCTCACCCTCGTCGGCCTCGCCGCCGCGTGGATCTTCCTCTACTCGCACCGACAGTCGGATCAGCCGCTCGTGATCTTGGGCCGGACTTACTCCGACACGCAGGTGCTGTTTGGGCTGGGCCTGGTGACGCTGATCGCGATCTTGATGACGAGCGTGCTGTCGCTGCTCATAACGGCGCTGATGGTGGGGGTCGGGATCGTCTGTGCTCACGGCGCGTTTAGGGATCCTGAGGATCTGTTCTTGGATGAATCGCAGCCGTTGGGTTCTGGATTCGCTTCGATGTTCAGTGGGGCCGCTTCCTCTGCTGGCGCCAGCATGGTGTCACGTGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PRA1

Protein Analysis

213

Amino Acids

23.02

Weight (kDa)

10.24

Isoelectric Point (pI)

47.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRA1 PF03208 45 - 186 1.9e-47 PRA1 family protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018013)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g39780
malus_domestica MD03G1056700.v1.1 MD11G1058500.v1.1
prunus_persica Prupe.6G048100_v2.0.a1
pyrus_communis pycom03g04510
rosa_chinensis RchiOBHm_Chr5g0071661
rosa_multiflora Rmu_sc0005745.1_g000036
rosa_roxburghii Rroxscaffold_1G00009510
rosa_rugosa Rorug05G0414100
rosa_samantha Rh5BG489600
rosa_wichuraiana Rw5G043670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 400
Acc36I ACCTGC 1 cut(s) 400
AccB1I GGYRCC 1 cut(s) 617
AccBSI CCGCTC 1 cut(s) 376
AccI GTMKAC 1 cut(s) 165
AccII CGCG 9 cut(s) 106, 131, 206, 214, 216, 243, 335, 446, 524
AclWI GGATC 8 cut(s) 13, 87, 347, 375, 512, 527, 540, 549
AcvI CACGTG 1 cut(s) 635
AcyI GRCGYC 1 cut(s) 618
AfiI CCNNNNNNNGG 2 cut(s) 336, 364
AflIII ACRYGT 1 cut(s) 634
AjnI CCWGG 2 cut(s) 149, 429
AleI CACNNNNGTG 1 cut(s) 410
AluBI AGCT 1 cut(s) 160
AluI AGCT 1 cut(s) 160
Alw21I GWGCWC 3 cut(s) 162, 264, 517
AlwI GGATC 8 cut(s) 13, 87, 347, 375, 512, 527, 540, 549
AlwNI CAGNNNCTG 1 cut(s) 415
AoxI GGCC 5 cut(s) 207, 322, 388, 427, 600
ApeKI GCWGC 3 cut(s) 79, 472, 562
AspLEI GCGC 6 cut(s) 108, 133, 216, 487, 524, 620
AspS9I GGNCC 4 cut(s) 153, 388, 427, 600
AsuHPI GGTGA 2 cut(s) 304, 445
AvaII GGWCC 1 cut(s) 153
AxyI CCTNAGG 1 cut(s) 537
BamHI GGATCC 1 cut(s) 532
BanI GGYRCC 1 cut(s) 617
BanII GRGCYC 1 cut(s) 162
BauI CACGAG 1 cut(s) 377
BbrPI CACGTG 1 cut(s) 635
BbsI GAAGAC 1 cut(s) 3
Bbv12I GWGCWC 3 cut(s) 162, 264, 517
BbvI GCAGC 3 cut(s) 66, 459, 574
BccI CCATC 2 cut(s) 104, 484
BceAI ACGGC 5 cut(s) 70, 251, 498, 535, 550
BcgI CGANNNNNNTGC 2 cut(s) 115, 149
BciT130I CCWGG 2 cut(s) 151, 431
BfaI CTAG 1 cut(s) 640
BfoI RGCGCY 2 cut(s) 488, 621
BfuAI ACCTGC 1 cut(s) 400
Bme1390I CCNGG 2 cut(s) 151, 431
Bme18I GGWCC 1 cut(s) 153
BmgT120I GGNCC 4 cut(s) 153, 388, 427, 600
BmiI GGNNCC 3 cut(s) 534, 601, 619
BmrFI CCNGG 2 cut(s) 151, 431
BpiI GAAGAC 1 cut(s) 3
BsaAI YACGTR 1 cut(s) 635
BsaBI GATNNNNATC 1 cut(s) 446
BsaHI GRCGYC 1 cut(s) 618
BsaJI CCNNGG 1 cut(s) 149
Bsc4I CCNNNNNNNGG 2 cut(s) 336, 364
Bse21I CCTNAGG 1 cut(s) 537
Bse8I GATNNNNATC 1 cut(s) 446
BseBI CCWGG 2 cut(s) 151, 431
BseDI CCNNGG 1 cut(s) 149
BseGI GGATG 2 cut(s) 96, 559
BseJI GATNNNNATC 1 cut(s) 446
BseLI CCNNNNNNNGG 2 cut(s) 336, 364
BseMII CTCAG 1 cut(s) 528
BseRI GAGGAG 7 cut(s) 22, 25, 28, 31, 34, 278, 299
BseXI GCAGC 3 cut(s) 66, 459, 574
BseYI CCCAGC 1 cut(s) 424
Bsh1236I CGCG 9 cut(s) 106, 131, 206, 214, 216, 243, 335, 446, 524
Bsh1285I CGRYCG 2 cut(s) 169, 188
BshFI GGCC 5 cut(s) 209, 324, 390, 429, 602
BshNI GGYRCC 1 cut(s) 617
BsiEI CGRYCG 2 cut(s) 169, 188
BsiHKAI GWGCWC 3 cut(s) 162, 264, 517
BsiSI CCGG 1 cut(s) 391
BslI CCNNNNNNNGG 2 cut(s) 336, 364
BsnI GGCC 5 cut(s) 209, 324, 390, 429, 602
Bsp1286I GDGCHC 3 cut(s) 162, 264, 517
Bsp68I TCGCGA 1 cut(s) 446
BspANI GGCC 5 cut(s) 209, 324, 390, 429, 602
BspCNI CTCAG 1 cut(s) 529
BspFNI CGCG 9 cut(s) 106, 131, 206, 214, 216, 243, 335, 446, 524
BspLI GGNNCC 3 cut(s) 534, 601, 619
BspMI ACCTGC 1 cut(s) 400
BspPI GGATC 8 cut(s) 13, 87, 347, 375, 512, 527, 540, 549
BspT107I GGYRCC 1 cut(s) 617
BsrBI CCGCTC 1 cut(s) 376
BssECI CCNNGG 1 cut(s) 149
BssNI GRCGYC 1 cut(s) 618
BssSI CACGAG 1 cut(s) 377
Bst2BI CACGAG 1 cut(s) 377
Bst2UI CCWGG 2 cut(s) 151, 431
Bst4CI ACNGT 3 cut(s) 54, 189, 363
BstACI GRCGYC 1 cut(s) 618
BstBAI YACGTR 1 cut(s) 635
BstC8I GCNNGC 4 cut(s) 264, 464, 616, 622
BstDEI CTNAG 1 cut(s) 537
BstF5I GGATG 2 cut(s) 96, 559
BstFNI CGCG 9 cut(s) 106, 131, 206, 214, 216, 243, 335, 446, 524
BstH2I RGCGCY 2 cut(s) 488, 621
BstHHI GCGC 6 cut(s) 108, 133, 216, 487, 524, 620
BstMCI CGRYCG 2 cut(s) 169, 188
BstMWI GCNNNNNNNGC 6 cut(s) 114, 123, 421, 472, 521, 611
BstNI CCWGG 2 cut(s) 151, 431
BstSCI CCNGG 2 cut(s) 149, 429
BstUI CGCG 9 cut(s) 106, 131, 206, 214, 216, 243, 335, 446, 524
BstV1I GCAGC 3 cut(s) 66, 459, 574
BstV2I GAAGAC 1 cut(s) 3
BstX2I RGATCY 3 cut(s) 339, 532, 541
BstYI RGATCY 3 cut(s) 339, 532, 541
Bsu36I CCTNAGG 1 cut(s) 537
BsuRI GGCC 5 cut(s) 209, 324, 390, 429, 602
BtsCI GGATG 2 cut(s) 96, 559
BtsIMutI CAGTG 1 cut(s) 601
BtuMI TCGCGA 1 cut(s) 446
BveI ACCTGC 1 cut(s) 400
Cac8I GCNNGC 4 cut(s) 264, 464, 616, 622
CaiI CAGNNNCTG 1 cut(s) 415
CfoI GCGC 6 cut(s) 108, 133, 216, 487, 524, 620
Cfr13I GGNCC 4 cut(s) 153, 388, 427, 600
CseI GACGC 3 cut(s) 212, 232, 445
CviAII CATG 1 cut(s) 625
DdeI CTNAG 1 cut(s) 537
DinI GGCGCC 1 cut(s) 619
Ecl136II GAGCTC 1 cut(s) 160
Eco24I GRGCYC 1 cut(s) 162
Eco47I GGWCC 1 cut(s) 153
Eco53kI GAGCTC 1 cut(s) 160
Eco72I CACGTG 1 cut(s) 635
Eco81I CCTNAGG 1 cut(s) 537
EcoICRI GAGCTC 1 cut(s) 160
EcoRII CCWGG 2 cut(s) 149, 429
EcoT38I GRGCYC 1 cut(s) 162
EgeI GGCGCC 1 cut(s) 619
EheI GGCGCC 1 cut(s) 619
FaeI CATG 1 cut(s) 628
FaiI YATR 2 cut(s) 479, 626
FatI CATG 1 cut(s) 624
FauI CCCGC 2 cut(s) 122, 131
FblI GTMKAC 1 cut(s) 165
FokI GGATG 2 cut(s) 83, 566
FriOI GRGCYC 1 cut(s) 162
FspBI CTAG 1 cut(s) 640
GlaI GCGC 6 cut(s) 107, 132, 215, 486, 523, 619
GsaI CCCAGC 1 cut(s) 428
HaeII RGCGCY 2 cut(s) 488, 621
HaeIII GGCC 5 cut(s) 209, 324, 390, 429, 602
HapII CCGG 1 cut(s) 391
HgaI GACGC 3 cut(s) 212, 232, 445
HhaI GCGC 6 cut(s) 108, 133, 216, 487, 524, 620
Hin1I GRCGYC 1 cut(s) 618
Hin1II CATG 1 cut(s) 628
Hin6I GCGC 6 cut(s) 106, 131, 214, 485, 522, 618
HinP1I GCGC 6 cut(s) 106, 131, 214, 485, 522, 618
HincII GTYRAC 3 cut(s) 139, 166, 247
HindII GTYRAC 3 cut(s) 139, 166, 247
HinfI GANTC 2 cut(s) 557, 579
HpaII CCGG 1 cut(s) 391
HphI GGTGA 2 cut(s) 304, 445
Hpy166II GTNNAC 4 cut(s) 57, 139, 166, 247
Hpy188I TCNGA 4 cut(s) 92, 202, 367, 403
Hpy188III TCNNGA 7 cut(s) 22, 379, 445, 451, 502, 536, 576
Hpy8I GTNNAC 4 cut(s) 57, 139, 166, 247
Hpy99I CGWCG 4 cut(s) 167, 206, 272, 323
HpyAV CCTTC 3 cut(s) 187, 205, 310
HpyCH4III ACNGT 3 cut(s) 54, 189, 363
HpyCH4IV ACGT 1 cut(s) 634
HpyF10VI GCNNNNNNNGC 6 cut(s) 114, 123, 421, 472, 521, 611
HpyF3I CTNAG 1 cut(s) 537
HpySE526I ACGT 1 cut(s) 634
Hsp92I GRCGYC 1 cut(s) 618
Hsp92II CATG 1 cut(s) 628
HspAI GCGC 6 cut(s) 106, 131, 214, 485, 522, 618
KasI GGCGCC 1 cut(s) 617
LmnI GCTCC 1 cut(s) 291
Lsp1109I GCAGC 3 cut(s) 66, 459, 574
MaeI CTAG 1 cut(s) 640
MaeII ACGT 1 cut(s) 634
MaeIII GTNAC 2 cut(s) 433, 630
MbiI CCGCTC 1 cut(s) 376
MboII GAAGA 2 cut(s) 3, 334
MflI RGATCY 3 cut(s) 339, 532, 541
MhlI GDGCHC 3 cut(s) 162, 264, 517
Mly113I GGCGCC 1 cut(s) 618
MmeI TCCRAC 3 cut(s) 225, 345, 426
MslI CAYNNNNRTG 1 cut(s) 410
MspA1I CMGCKG 1 cut(s) 79
MspI CCGG 1 cut(s) 391
MspR9I CCNGG 2 cut(s) 151, 431
MvaI CCWGG 2 cut(s) 151, 431
MvnI CGCG 9 cut(s) 106, 131, 206, 214, 216, 243, 335, 446, 524
MwoI GCNNNNNNNGC 6 cut(s) 114, 123, 421, 472, 521, 611
NarI GGCGCC 1 cut(s) 618
NlaIII CATG 1 cut(s) 628
NlaIV GGNNCC 3 cut(s) 534, 601, 619
NmuCI GTSAC 2 cut(s) 433, 630
NruI TCGCGA 1 cut(s) 446
OliI CACNNNNGTG 1 cut(s) 410
PaqCI CACCTGC 1 cut(s) 400
PcsI WCGNNNNNNNCGW 3 cut(s) 14, 264, 443
PfeI GAWTC 2 cut(s) 557, 579
PluTI GGCGCC 1 cut(s) 621
PmaCI CACGTG 1 cut(s) 635
PmlI CACGTG 1 cut(s) 635
Ppu21I YACGTR 1 cut(s) 635
Psp124BI GAGCTC 1 cut(s) 162
Psp6I CCWGG 2 cut(s) 149, 429
PspCI CACGTG 1 cut(s) 635
PspFI CCCAGC 1 cut(s) 424
PspGI CCWGG 2 cut(s) 149, 429
PspN4I GGNNCC 3 cut(s) 534, 601, 619
PspPI GGNCC 4 cut(s) 153, 388, 427, 600
PstNI CAGNNNCTG 1 cut(s) 415
PsuI RGATCY 3 cut(s) 339, 532, 541
RruI TCGCGA 1 cut(s) 446
RseI CAYNNNNRTG 1 cut(s) 410
SacI GAGCTC 1 cut(s) 162
SalI GTCGAC 1 cut(s) 164
Sau96I GGNCC 4 cut(s) 153, 388, 427, 600
ScrFI CCNGG 2 cut(s) 151, 431
SduI GDGCHC 3 cut(s) 162, 264, 517
SetI ASST 4 cut(s) 162, 255, 414, 637
SfoI GGCGCC 1 cut(s) 619
SinI GGWCC 1 cut(s) 153
SmiMI CAYNNNNRTG 1 cut(s) 410
SspDI GGCGCC 1 cut(s) 617
SspMI CTAG 1 cut(s) 640
SstI GAGCTC 1 cut(s) 162
StyD4I CCNGG 2 cut(s) 149, 429
TaaI ACNGT 3 cut(s) 54, 189, 363
TaiI ACGT 1 cut(s) 637
TaqI TCGA 4 cut(s) 17, 165, 184, 587
TaqII GACCGA 1 cut(s) 170
TauI GCSGC 7 cut(s) 85, 209, 233, 332, 335, 376, 605
TfiI GAWTC 2 cut(s) 557, 579
TscAI CASTG 1 cut(s) 601
TseFI GTSAC 2 cut(s) 433, 630
TseI GCWGC 3 cut(s) 79, 472, 562
Tsp45I GTSAC 2 cut(s) 433, 630
TspDTI ATGAA 1 cut(s) 570
TspRI CASTG 1 cut(s) 601
VpaK11BI GGWCC 1 cut(s) 153
XmiI GTMKAC 1 cut(s) 165
XspI CTAG 1 cut(s) 640
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.