RchiOBHm_Chr5g0071881

Wound-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0017635
Physical Location & Seq
Forward (+)
77718120 .. 77718672
553 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 504 bp
ATGATGCCGGAAAATCCCCAATCCCGCCACAGAAAAATTGTGAAGACCCTCTACAAAACCCTAGCACACAGAGACACCAGAACCACCGTAATGCTAGTGGCTCCAGATCTCGAGTGGTGGTTCCACGGGCCTCCGCAGTGCCAGCACATGATGAAGATGCTAACCGGGCAGTCGAGGCACTTGGAGTTCAAGTTCCAGCCCCGAAGCCTCAAAGCGGTCGGGGACCGTGTGGTGGCGGAGGGATGGGAAGGTAAGAAGGCATACTGGGTACAGGTGTGGACTGTTAACAAGGATGGGATGATCACGCAGTTGCGCGAGTATTTCAACACTTGGGTGACGCTGATGGTTAGGGTTTCGGAGGCCGAGGACGAGATGGTGAAGCTGTGGCAGAGTGATTCAAAGGAGCGGTTCCGGCGCTCGTTGCCGGATATTGTGTCTAGTAATGTTCATATCTCTGAGTCACTGTGCTCAGAGTGTTCGTTCATTCTGCTACTATTAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WI12

Protein Analysis

167

Amino Acids

19.7

Weight (kDa)

9.05

Isoelectric Point (pI)

46.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WI12 PF07107 51 - 145 6.3e-25 Wound-induced protein WI12
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017635)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g39910
prunus_persica Prupe.6G046300_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0071881
rosa_laevigata RLG00000036259
rosa_multiflora Rmu_sc0002149.1_g000007 Rmu_sc0015603.1_g000001
rosa_roxburghii Rroxscaffold_1G00009280
rosa_rugosa Rorug05G0415300
rosa_samantha Rh5BG491300 Rh5CG515200 Rh5DG502800
rosa_wichuraiana Rw5G043810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 406
AccII CGCG 1 cut(s) 315
AciI CCGC 5 cut(s) 25, 134, 215, 236, 406
AfaI GTAC 1 cut(s) 270
AfiI CCNNNNNNNGG 2 cut(s) 214, 232
AgsI TTSAA 3 cut(s) 190, 325, 399
AleI CACNNNNGTG 1 cut(s) 332
AloI GAACNNNNNNTCC 2 cut(s) 176, 208
AluBI AGCT 1 cut(s) 382
AluI AGCT 1 cut(s) 382
Alw21I GWGCWC 1 cut(s) 470
Alw26I GTCTC 1 cut(s) 66
Ama87I CYCGRG 1 cut(s) 110
AoxI GGCC 2 cut(s) 128, 360
AspLEI GCGC 2 cut(s) 315, 417
AspS9I GGNCC 2 cut(s) 128, 223
AsuC2I CCSGG 1 cut(s) 166
AsuHPI GGTGA 2 cut(s) 346, 388
AvaI CYCGRG 1 cut(s) 110
AvaII GGWCC 1 cut(s) 223
BaeI ACNNNNGTAYC 2 cut(s) 260, 293
BarI GAAGNNNNNNTAC 2 cut(s) 35, 67
BbsI GAAGAC 1 cut(s) 50
Bbv12I GWGCWC 1 cut(s) 470
BccI CCATC 4 cut(s) 237, 287, 337, 367
BclI TGATCA 1 cut(s) 300
BcnI CCSGG 1 cut(s) 166
BcoDI GTCTC 1 cut(s) 66
BfaI CTAG 3 cut(s) 62, 95, 438
BfoI RGCGCY 1 cut(s) 418
BglII AGATCT 1 cut(s) 106
Bme1390I CCNGG 1 cut(s) 166
Bme18I GGWCC 1 cut(s) 223
BmeT110I CYCGRG 1 cut(s) 110
BmgT120I GGNCC 2 cut(s) 128, 223
BmiI GGNNCC 4 cut(s) 102, 122, 224, 410
BmrFI CCNGG 1 cut(s) 166
BmrI ACTGGG 1 cut(s) 274
BmsI GCATC 1 cut(s) 147
BmuI ACTGGG 1 cut(s) 274
BpiI GAAGAC 1 cut(s) 50
BpmI CTGGAG 1 cut(s) 87
BpuMI CCSGG 1 cut(s) 166
BsaJI CCNNGG 2 cut(s) 124, 363
BsaXI ACNNNNNCTCC 2 cut(s) 176, 206
Bsc4I CCNNNNNNNGG 2 cut(s) 214, 232
Bse1I ACTGG 1 cut(s) 269
BseDI CCNNGG 2 cut(s) 124, 363
BseGI GGATG 3 cut(s) 248, 298, 303
BseLI CCNNNNNNNGG 2 cut(s) 214, 232
BseMII CTCAG 2 cut(s) 447, 483
BseNI ACTGG 1 cut(s) 269
Bsh1236I CGCG 1 cut(s) 315
Bsh1285I CGRYCG 1 cut(s) 219
BshFI GGCC 2 cut(s) 130, 362
BsiEI CGRYCG 1 cut(s) 219
BsiHKAI GWGCWC 1 cut(s) 470
BsiHKCI CYCGRG 1 cut(s) 110
BsiSI CCGG 4 cut(s) 8, 165, 412, 425
BslFI GGGAC 1 cut(s) 236
BslI CCNNNNNNNGG 2 cut(s) 214, 232
BsmAI GTCTC 1 cut(s) 66
BsmFI GGGAC 1 cut(s) 236
BsnI GGCC 2 cut(s) 130, 362
BsoBI CYCGRG 1 cut(s) 110
Bsp1286I GDGCHC 1 cut(s) 470
Bsp143I GATC 2 cut(s) 106, 300
BspACI CCGC 5 cut(s) 25, 134, 215, 236, 406
BspANI GGCC 2 cut(s) 130, 362
BspCNI CTCAG 2 cut(s) 448, 482
BspFNI CGCG 1 cut(s) 315
BspLI GGNNCC 4 cut(s) 102, 122, 224, 410
BsrBI CCGCTC 1 cut(s) 406
BsrI ACTGG 1 cut(s) 269
BssECI CCNNGG 2 cut(s) 124, 363
BssMI GATC 2 cut(s) 106, 300
Bst4CI ACNGT 4 cut(s) 88, 227, 283, 465
BstC8I GCNNGC 1 cut(s) 143
BstDEI CTNAG 2 cut(s) 456, 469
BstDSI CCRYGG 1 cut(s) 124
BstF5I GGATG 3 cut(s) 248, 298, 303
BstFNI CGCG 1 cut(s) 315
BstH2I RGCGCY 1 cut(s) 418
BstHHI GCGC 2 cut(s) 315, 417
BstKTI GATC 2 cut(s) 109, 303
BstMAI GTCTC 1 cut(s) 66
BstMBI GATC 2 cut(s) 106, 300
BstMCI CGRYCG 1 cut(s) 219
BstMWI GCNNNNNNNGC 5 cut(s) 142, 166, 175, 412, 421
BstSCI CCNGG 1 cut(s) 164
BstUI CGCG 1 cut(s) 315
BstV2I GAAGAC 1 cut(s) 50
BstX2I RGATCY 1 cut(s) 106
BstYI RGATCY 1 cut(s) 106
BsuRI GGCC 2 cut(s) 130, 362
BtgI CCRYGG 1 cut(s) 124
BtsCI GGATG 3 cut(s) 248, 298, 303
BtsI GCAGTG 1 cut(s) 143
BtsIMutI CAGTG 2 cut(s) 143, 461
Cac8I GCNNGC 1 cut(s) 143
CfoI GCGC 2 cut(s) 315, 417
Cfr13I GGNCC 2 cut(s) 128, 223
CseI GACGC 1 cut(s) 346
Csp6I GTAC 1 cut(s) 269
CviAII CATG 1 cut(s) 148
CviJI RGCY 6 cut(s) 101, 130, 199, 207, 362, 382
CviKI_1 RGCY 6 cut(s) 101, 130, 199, 207, 362, 382
CviQI GTAC 1 cut(s) 269
DdeI CTNAG 2 cut(s) 456, 469
DpnI GATC 2 cut(s) 108, 302
DpnII GATC 2 cut(s) 106, 300
EciI GGCGGA 1 cut(s) 251
Eco47I GGWCC 1 cut(s) 223
Eco88I CYCGRG 1 cut(s) 110
FaeI CATG 1 cut(s) 151
FaiI YATR 3 cut(s) 149, 262, 450
FaqI GGGAC 1 cut(s) 236
FatI CATG 1 cut(s) 147
FauI CCCGC 1 cut(s) 32
FbaI TGATCA 1 cut(s) 300
FokI GGATG 3 cut(s) 255, 305, 310
FspBI CTAG 3 cut(s) 62, 95, 438
GlaI GCGC 2 cut(s) 314, 416
GsuI CTGGAG 1 cut(s) 87
HaeII RGCGCY 1 cut(s) 418
HaeIII GGCC 2 cut(s) 130, 362
HapII CCGG 4 cut(s) 8, 165, 412, 425
HgaI GACGC 1 cut(s) 346
HhaI GCGC 2 cut(s) 315, 417
Hin1II CATG 1 cut(s) 151
Hin6I GCGC 2 cut(s) 313, 415
HinP1I GCGC 2 cut(s) 313, 415
HincII GTYRAC 1 cut(s) 286
HindII GTYRAC 1 cut(s) 286
HinfI GANTC 2 cut(s) 395, 458
HpaI GTTAAC 1 cut(s) 286
HpaII CCGG 4 cut(s) 8, 165, 412, 425
HphI GGTGA 2 cut(s) 346, 388
Hpy166II GTNNAC 2 cut(s) 279, 286
Hpy188I TCNGA 3 cut(s) 358, 457, 472
Hpy188III TCNNGA 2 cut(s) 104, 110
Hpy8I GTNNAC 2 cut(s) 279, 286
HpyAV CCTTC 2 cut(s) 242, 250
HpyCH4III ACNGT 4 cut(s) 88, 227, 283, 465
HpyF10VI GCNNNNNNNGC 5 cut(s) 142, 166, 175, 412, 421
HpyF3I CTNAG 2 cut(s) 456, 469
Hsp92II CATG 1 cut(s) 151
HspAI GCGC 2 cut(s) 313, 415
Ksp22I TGATCA 1 cut(s) 300
KspAI GTTAAC 1 cut(s) 286
Kzo9I GATC 2 cut(s) 106, 300
LmnI GCTCC 2 cut(s) 106, 403
LweI GCATC 1 cut(s) 147
MaeI CTAG 3 cut(s) 62, 95, 438
MaeIII GTNAC 2 cut(s) 334, 459
MalI GATC 2 cut(s) 108, 302
MbiI CCGCTC 1 cut(s) 406
MboI GATC 2 cut(s) 106, 300
MboII GAAGA 2 cut(s) 55, 166
MflI RGATCY 1 cut(s) 106
MhlI GDGCHC 1 cut(s) 470
MluCI AATT 2 cut(s) 36, 499
MlyI GAGTC 1 cut(s) 467
MnlI CCTC 7 cut(s) 59, 141, 168, 218, 232, 352, 358
MseI TTAA 3 cut(s) 285, 497, 502
MslI CAYNNNNRTG 2 cut(s) 89, 332
MspI CCGG 4 cut(s) 8, 165, 412, 425
MspR9I CCNGG 1 cut(s) 166
MvnI CGCG 1 cut(s) 315
MwoI GCNNNNNNNGC 5 cut(s) 142, 166, 175, 412, 421
NciI CCSGG 1 cut(s) 166
NdeII GATC 2 cut(s) 106, 300
NlaIII CATG 1 cut(s) 151
NlaIV GGNNCC 4 cut(s) 102, 122, 224, 410
NmeAIII GCCGAG 1 cut(s) 388
NmuCI GTSAC 2 cut(s) 334, 459
OliI CACNNNNGTG 1 cut(s) 332
PaeR7I CTCGAG 1 cut(s) 110
PfeI GAWTC 1 cut(s) 395
PleI GAGTC 1 cut(s) 466
PpsI GAGTC 1 cut(s) 466
PspN4I GGNNCC 4 cut(s) 102, 122, 224, 410
PspPI GGNCC 2 cut(s) 128, 223
PsuI RGATCY 1 cut(s) 106
RsaI GTAC 1 cut(s) 270
RsaNI GTAC 1 cut(s) 269
RseI CAYNNNNRTG 2 cut(s) 89, 332
SaqAI TTAA 3 cut(s) 285, 497, 502
Sau3AI GATC 2 cut(s) 106, 300
Sau96I GGNCC 2 cut(s) 128, 223
SchI GAGTC 1 cut(s) 467
ScrFI CCNGG 1 cut(s) 166
SduI GDGCHC 1 cut(s) 470
SetI ASST 3 cut(s) 253, 276, 384
SfaNI GCATC 1 cut(s) 147
Sfr274I CTCGAG 1 cut(s) 110
SinI GGWCC 1 cut(s) 223
SlaI CTCGAG 1 cut(s) 110
SmiMI CAYNNNNRTG 2 cut(s) 89, 332
SmlI CTYRAG 1 cut(s) 110
SmoI CTYRAG 1 cut(s) 110
Sse9I AATT 2 cut(s) 36, 499
SsiI CCGC 5 cut(s) 25, 134, 215, 236, 406
SspMI CTAG 3 cut(s) 62, 95, 438
StyD4I CCNGG 1 cut(s) 164
TaaI ACNGT 4 cut(s) 88, 227, 283, 465
TaqI TCGA 2 cut(s) 111, 173
TasI AATT 2 cut(s) 36, 499
TfiI GAWTC 1 cut(s) 395
Tru1I TTAA 3 cut(s) 285, 497, 502
Tru9I TTAA 3 cut(s) 285, 497, 502
TscAI CASTG 2 cut(s) 143, 468
TseFI GTSAC 2 cut(s) 334, 459
Tsp45I GTSAC 2 cut(s) 334, 459
TspDTI ATGAA 3 cut(s) 167, 437, 472
TspRI CASTG 2 cut(s) 143, 468
VpaK11BI GGWCC 1 cut(s) 223
XcmI CCANNNNNNNNNTGG 1 cut(s) 111
XhoI CTCGAG 1 cut(s) 110
XspI CTAG 3 cut(s) 62, 95, 438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.