Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0016871

Physical Location & Seq

Genomic Coordinates Forward (+)

1553098 .. 1555121

Gene Structure 2024 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGAGGAACTGCTCTATGATGTCCCATTTGTGTGCAAGTCATGGCATAGAGCAAGCCACAATCCATCGTGCTGGCAATCTCTCATTTTTCCAGACATTGATCATAATGCTGTTGACGAAGATGAGAATATCAAATATGATGCTTCCTCTGCGGACAATGAGTCCAAACCTCAGAGTTTTGGTGCTTTCTATGACAGATTCATGCATGAATATCAAATTGACAGCGGTCGTTTCTCAATCGGTGGTATTATAAAGGTTGTCATCAAGCGCGGCAACGGACTTGCTACTGTTCTTAAGCTACCTCAAAACTCCACAGAAGAAGTTCTTACGTCTGTTTCAGATGTGTGTCCTGGACTTAAGTTTTTGTCTCTATCGTGTGACTACAAGTTCTCAATCCTTTCAAAGTACTCCCTTGCAGTTCTGGAACTGATTACGAATTGTACAAATTTGGAGACATTGTCATTGGAAAGCAGTTGCCACCGCTACGGCAACCAGAGATTTAATCATGTTGCACTTCTGGTACAGATCAGCATTCACTGCAAGAATGTTGTAGATTTGCGCGTGTCGAATTCCCAGATATGTAAATATGGGACACGCTCGATTACCGCATTGCTGCCTAAAATAAAGTACTTGAGCTTTAGGAAGTGTGACGTTGATCAAAAAGATCTCATCAGCTTACTGCTGAGGTGCAAAGAGCTAGTGCTTTTGGATATGAGAGATTGTGTAGGTTTTAAGGTTGATGATGAAATATCTAAGCTTGCTTCTCATATCAGTACATTTGTCTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

262

Amino Acids

29.71

Weight (kDa)

6.24

Isoelectric Point (pI)

42.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016871)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g07600 FvH4_6g07600
rosa_chinensis	RchiOBHm_Chr4g0385781 RchiOBHm_Chr4g0385921
rosa_laevigata	RLG00000010201
rosa_multiflora	Rmu_sc0007400.1_g000010 Rmu_sc0024454.1_g000001
rosa_roxburghii	Rroxscaffold_5G00333520
rosa_rugosa	Rorug03G0302900 Rorug03G0303000
rosa_samantha	Rh4AG007500 Rh4BG005300 Rh4CG008100 Rh4DG007000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	251
AccII	CGCG	2 cut(s)	270, 561
AciI	CCGC	5 cut(s)	152, 225, 270, 481, 606
AcsI	RAATTY	2 cut(s)	445, 568
AfaI	GTAC	5 cut(s)	407, 442, 522, 629, 775
AflII	CTTAAG	2 cut(s)	293, 356
AgsI	TTSAA	1 cut(s)	402
AhdI	GACNNNNNGTC	1 cut(s)	160
AjnI	CCWGG	1 cut(s)	349
AluBI	AGCT	5 cut(s)	298, 636, 675, 697, 757
AluI	AGCT	5 cut(s)	298, 636, 675, 697, 757
Alw26I	GTCTC	2 cut(s)	372, 446
ApeKI	GCWGC	1 cut(s)	613
ApoI	RAATTY	2 cut(s)	445, 568
Asp700I	GAANNNNTTC	1 cut(s)	321
AspLEI	GCGC	2 cut(s)	270, 561
BbvCI	CCTCAGC	1 cut(s)	683
BbvI	GCAGC	1 cut(s)	600
BccI	CCATC	1 cut(s)	73
BceAI	ACGGC	1 cut(s)	502
BciT130I	CCWGG	1 cut(s)	351
BclI	TGATCA	2 cut(s)	100, 655
BcoDI	GTCTC	2 cut(s)	372, 446
BfaI	CTAG	1 cut(s)	698
BfrI	CTTAAG	2 cut(s)	293, 356
BglII	AGATCT	1 cut(s)	664
BisI	GCNGC	2 cut(s)	271, 614
BlsI	GCNGC	2 cut(s)	272, 615
BmcAI	AGTACT	2 cut(s)	407, 629
Bme1390I	CCNGG	1 cut(s)	351
BmeRI	GACNNNNNGTC	1 cut(s)	160
BmrFI	CCNGG	1 cut(s)	351
BmsI	GCATC	1 cut(s)	130
BoxI	GACNNNNGTC	1 cut(s)	225
Bpu10I	CCTNAGC	1 cut(s)	683
BpuEI	CTTGAG	1 cut(s)	652
BsaXI	ACNNNNNCTCC	2 cut(s)	443, 473
Bse3DI	GCAATG	1 cut(s)	608
BseBI	CCWGG	1 cut(s)	351
BseMI	GCAATG	1 cut(s)	608
BseMII	CTCAG	2 cut(s)	185, 674
BseXI	GCAGC	1 cut(s)	600
Bsh1236I	CGCG	2 cut(s)	270, 561
Bsh1285I	CGRYCG	1 cut(s)	229
BsiEI	CGRYCG	1 cut(s)	229
BslFI	GGGAC	2 cut(s)	8, 604
BsmAI	GTCTC	2 cut(s)	372, 446
BsmFI	GGGAC	2 cut(s)	8, 604
BsmI	GAATGC	1 cut(s)	531
Bsp1407I	TGTACA	1 cut(s)	440
Bsp143I	GATC	4 cut(s)	100, 525, 655, 664
BspACI	CCGC	5 cut(s)	152, 225, 270, 481, 606
BspCNI	CTCAG	2 cut(s)	184, 675
BspFNI	CGCG	2 cut(s)	270, 561
BspTI	CTTAAG	2 cut(s)	293, 356
BsrDI	GCAATG	1 cut(s)	608
BsrGI	TGTACA	1 cut(s)	440
BssMI	GATC	4 cut(s)	100, 525, 655, 664
Bst2UI	CCWGG	1 cut(s)	351
Bst4CI	ACNGT	1 cut(s)	289
BstAFI	CTTAAG	2 cut(s)	293, 356
BstAPI	GCANNNNNTGC	1 cut(s)	537
BstAUI	TGTACA	1 cut(s)	440
BstC8I	GCNNGC	3 cut(s)	55, 74, 759
BstDEI	CTNAG	3 cut(s)	171, 683, 753
BstFNI	CGCG	2 cut(s)	270, 561
BstHHI	GCGC	2 cut(s)	270, 561
BstKTI	GATC	4 cut(s)	103, 528, 658, 667
BstMAI	GTCTC	2 cut(s)	372, 446
BstMBI	GATC	4 cut(s)	100, 525, 655, 664
BstMCI	CGRYCG	1 cut(s)	229
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 537
BstNI	CCWGG	1 cut(s)	351
BstPAI	GACNNNNGTC	1 cut(s)	225
BstSCI	CCNGG	1 cut(s)	349
BstUI	CGCG	2 cut(s)	270, 561
BstV1I	GCAGC	1 cut(s)	600
BstX2I	RGATCY	1 cut(s)	664
BstXI	CCANNNNNNTGG	1 cut(s)	72
BstYI	RGATCY	1 cut(s)	664
BtsI	GCAGTG	1 cut(s)	535
BtsIMutI	CAGTG	1 cut(s)	535
Cac8I	GCNNGC	3 cut(s)	55, 74, 759
CfoI	GCGC	2 cut(s)	270, 561
Csp6I	GTAC	5 cut(s)	406, 441, 521, 628, 774
CviAII	CATG	4 cut(s)	42, 202, 206, 506
CviJI	RGCY	6 cut(s)	57, 298, 636, 675, 697, 757
CviKI_1	RGCY	6 cut(s)	57, 298, 636, 675, 697, 757
CviQI	GTAC	5 cut(s)	406, 441, 521, 628, 774
DdeI	CTNAG	3 cut(s)	171, 683, 753
DpnI	GATC	4 cut(s)	102, 527, 657, 666
DpnII	GATC	4 cut(s)	100, 525, 655, 664
DriI	GACNNNNNGTC	1 cut(s)	160
Eam1105I	GACNNNNNGTC	1 cut(s)	160
EcoRI	GAATTC	1 cut(s)	568
EcoRII	CCWGG	1 cut(s)	349
EcoT22I	ATGCAT	1 cut(s)	207
FaeI	CATG	4 cut(s)	45, 205, 209, 509
FalI	AAGNNNNNCTT	2 cut(s)	309, 341
FaqI	GGGAC	2 cut(s)	8, 604
FatI	CATG	4 cut(s)	41, 201, 205, 505
FbaI	TGATCA	2 cut(s)	100, 655
Fnu4HI	GCNGC	2 cut(s)	271, 614
Fsp4HI	GCNGC	2 cut(s)	271, 614
FspBI	CTAG	1 cut(s)	698
GlaI	GCGC	2 cut(s)	269, 560
GluI	GCNGC	2 cut(s)	271, 614
HhaI	GCGC	2 cut(s)	270, 561
Hin1II	CATG	4 cut(s)	45, 205, 209, 509
Hin6I	GCGC	2 cut(s)	268, 559
HinP1I	GCGC	2 cut(s)	268, 559
HincII	GTYRAC	1 cut(s)	115
HindII	GTYRAC	1 cut(s)	115
HindIII	AAGCTT	1 cut(s)	755
HinfI	GANTC	2 cut(s)	161, 198
Hpy166II	GTNNAC	1 cut(s)	115
Hpy188I	TCNGA	2 cut(s)	174, 340
Hpy188III	TCNNGA	2 cut(s)	92, 422
Hpy8I	GTNNAC	1 cut(s)	115
HpyCH4III	ACNGT	1 cut(s)	289
HpyCH4IV	ACGT	2 cut(s)	329, 651
HpyCH4V	TGCA	6 cut(s)	36, 205, 416, 512, 540, 690
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 537
HpyF3I	CTNAG	3 cut(s)	171, 683, 753
HpySE526I	ACGT	2 cut(s)	329, 651
Hsp92II	CATG	4 cut(s)	45, 205, 209, 509
HspAI	GCGC	2 cut(s)	268, 559
Ksp22I	TGATCA	2 cut(s)	100, 655
Kzo9I	GATC	4 cut(s)	100, 525, 655, 664
LpnPI	CCDG	8 cut(s)	58, 105, 336, 363, 407, 503, 506, 587
Lsp1109I	GCAGC	1 cut(s)	600
LweI	GCATC	1 cut(s)	130
MaeI	CTAG	1 cut(s)	698
MaeII	ACGT	2 cut(s)	329, 651
MaeIII	GTNAC	2 cut(s)	377, 647
MalI	GATC	4 cut(s)	102, 527, 657, 666
MboI	GATC	4 cut(s)	100, 525, 655, 664
MboII	GAAGA	2 cut(s)	131, 329
MflI	RGATCY	1 cut(s)	664
MluCI	AATT	4 cut(s)	216, 436, 445, 568
MlyI	GAGTC	1 cut(s)	170
MnlI	CCTC	4 cut(s)	157, 180, 312, 678
Mph1103I	ATGCAT	1 cut(s)	207
MroXI	GAANNNNTTC	1 cut(s)	321
MseI	TTAA	5 cut(s)	294, 357, 501, 732, 787
MslI	CAYNNNNRTG	1 cut(s)	31
MspA1I	CMGCKG	1 cut(s)	225
MspCI	CTTAAG	2 cut(s)	293, 356
MspR9I	CCNGG	1 cut(s)	351
Mva1269I	GAATGC	1 cut(s)	531
MvaI	CCWGG	1 cut(s)	351
MvnI	CGCG	2 cut(s)	270, 561
MwoI	GCNNNNNNNGC	2 cut(s)	149, 537
NdeII	GATC	4 cut(s)	100, 525, 655, 664
NlaIII	CATG	4 cut(s)	45, 205, 209, 509
NmuCI	GTSAC	2 cut(s)	377, 647
NsiI	ATGCAT	1 cut(s)	207
PctI	GAATGC	1 cut(s)	531
PdmI	GAANNNNTTC	1 cut(s)	321
PfeI	GAWTC	1 cut(s)	198
PflFI	GACNNNGTC	1 cut(s)	457
PfoI	TCCNGGA	1 cut(s)	349
PkrI	GCNGC	2 cut(s)	272, 615
PleI	GAGTC	1 cut(s)	169
PpsI	GAGTC	1 cut(s)	169
PshAI	GACNNNNGTC	1 cut(s)	225
PsiI	TTATAA	1 cut(s)	251
Psp6I	CCWGG	1 cut(s)	349
PspGI	CCWGG	1 cut(s)	349
PsuI	RGATCY	1 cut(s)	664
PsyI	GACNNNGTC	1 cut(s)	457
RsaI	GTAC	5 cut(s)	407, 442, 522, 629, 775
RsaNI	GTAC	5 cut(s)	406, 441, 521, 628, 774
RseI	CAYNNNNRTG	1 cut(s)	31
SaqAI	TTAA	5 cut(s)	294, 357, 501, 732, 787
SatI	GCNGC	2 cut(s)	271, 614
Sau3AI	GATC	4 cut(s)	100, 525, 655, 664
ScaI	AGTACT	2 cut(s)	407, 629
SchI	GAGTC	1 cut(s)	170
ScrFI	CCNGG	1 cut(s)	351
SfaNI	GCATC	1 cut(s)	130
SmiMI	CAYNNNNRTG	1 cut(s)	31
SmlI	CTYRAG	3 cut(s)	293, 356, 631
SmoI	CTYRAG	3 cut(s)	293, 356, 631
Sse9I	AATT	4 cut(s)	216, 436, 445, 568
SsiI	CCGC	5 cut(s)	152, 225, 270, 481, 606
SspMI	CTAG	1 cut(s)	698
StyD4I	CCNGG	1 cut(s)	349
TaaI	ACNGT	1 cut(s)	289
TaiI	ACGT	2 cut(s)	332, 654
TaqI	TCGA	2 cut(s)	566, 599
TasI	AATT	4 cut(s)	216, 436, 445, 568
TatI	WGTACW	4 cut(s)	405, 440, 627, 773
TauI	GCSGC	1 cut(s)	273
TfiI	GAWTC	1 cut(s)	198
Tru1I	TTAA	5 cut(s)	294, 357, 501, 732, 787
Tru9I	TTAA	5 cut(s)	294, 357, 501, 732, 787
TscAI	CASTG	1 cut(s)	542
TseFI	GTSAC	2 cut(s)	377, 647
TseI	GCWGC	1 cut(s)	613
Tsp45I	GTSAC	2 cut(s)	377, 647
TspDTI	ATGAA	3 cut(s)	190, 222, 759
TspGWI	ACGGA	1 cut(s)	291
TspRI	CASTG	1 cut(s)	542
Tth111I	GACNNNGTC	1 cut(s)	457
Vha464I	CTTAAG	2 cut(s)	293, 356
XapI	RAATTY	2 cut(s)	445, 568
XmnI	GAANNNNTTC	1 cut(s)	321
XspI	CTAG	1 cut(s)	698
ZrmI	AGTACT	2 cut(s)	407, 629
Zsp2I	ATGCAT	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.