RchiOBHm_Chr4g0387071

Peroxisome biogenesis factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0019407
Physical Location & Seq
Reverse (-)
2356854 .. 2357960
1107 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 327 bp
ATGACTGCAAATAAACTAGAAGTAAAGGTTGCAGGGCCTTATGGGCTGCCTTTAACTCCAGCAAGGCGTGCACTTTTCATTGTGTACCGGACGGCTCTTCCTTATGTTGGAGAAAGAATTAGTTCTCGATCTGCTAACCTTGGCATTCTCCTTGCTGATTCCCAGTCTGATGAGGTTTACAGCTTCAGTGCTCAGTCTTCTTCAATCACTCGCGCCGCATCTTCCTCCACGCCGCCGGCTTCTGTTTCAGCTCTCAAAAGATTGAAGCAGAGATTGAATGAATTGTGGCTTTCTGCAGTTCGGAAATGGCCTACAGTACACTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005829 GO:0006082 GO:0006464 GO:0006513 GO:0006605 GO:0006625 GO:0006629 GO:0006631 GO:0006635 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009790 GO:0009791 GO:0009793 GO:0009853 GO:0009987 GO:0010154 GO:0010381 GO:0015031 GO:0015833 GO:0015919 GO:0016020 GO:0016042 GO:0016043 GO:0016054 GO:0016558 GO:0016567 GO:0016740 GO:0017038 GO:0019395 GO:0019538 GO:0019752 GO:0019787 GO:0022406 GO:0022414 GO:0030258 GO:0031090 GO:0031903 GO:0032446 GO:0032501 GO:0032502 GO:0032787 GO:0033036 GO:0033365 GO:0034440 GO:0034613 GO:0036211 GO:0042579 GO:0042886 GO:0043094 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0043574 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045184 GO:0046395 GO:0046907 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0055085 GO:0055114 GO:0061458 GO:0065002 GO:0070647 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072329 GO:0072594 GO:0072662 GO:0072663 GO:0098588 GO:0098805 GO:0140056 GO:0140096 GO:1901564 GO:1901575
KEGG Pathways
Metabolic & Signaling
ko04146 map04146
Pfam Domains
Protein Families
Pex2_Pex12 zf-C3HC4_3 zf-RING_2

Protein Analysis

108

Amino Acids

11.79

Weight (kDa)

10.47

Isoelectric Point (pI)

51.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019407)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0387071
rosa_multiflora Rmu_sc0006648.1_g000010
rosa_samantha Rh4CG014400 Rh4CG014700 Rh4CG015200 Rh4CG015700 Rh4CG016100 Rh4DG011400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 213
AciI CCGC 2 cut(s) 216, 233
AcuI CTGAAG 1 cut(s) 169
AfaI GTAC 2 cut(s) 86, 318
AfiI CCNNNNNNNGG 1 cut(s) 107
AgsI TTSAA 3 cut(s) 204, 265, 277
AluBI AGCT 2 cut(s) 183, 251
AluI AGCT 2 cut(s) 183, 251
Alw21I GWGCWC 2 cut(s) 73, 193
Alw44I GTGCAC 1 cut(s) 69
AoxI GGCC 2 cut(s) 35, 308
ApaLI GTGCAC 1 cut(s) 69
ApeKI GCWGC 1 cut(s) 46
Asp700I GAANNNNTTC 1 cut(s) 121
AspLEI GCGC 1 cut(s) 215
AspS9I GGNCC 1 cut(s) 35
BaeGI GKGCMC 1 cut(s) 73
BbsI GAAGAC 1 cut(s) 189
Bbv12I GWGCWC 2 cut(s) 73, 193
BbvI GCAGC 1 cut(s) 33
BceAI ACGGC 1 cut(s) 108
BfaI CTAG 1 cut(s) 17
BfmI CTRYAG 2 cut(s) 294, 312
BglI GCCNNNNNGGC 1 cut(s) 43
BisI GCNGC 3 cut(s) 47, 216, 233
BlsI GCNGC 3 cut(s) 48, 217, 234
BmgT120I GGNCC 1 cut(s) 35
BmrI ACTGGG 1 cut(s) 157
BmsI GCATC 1 cut(s) 227
BmuI ACTGGG 1 cut(s) 157
BpiI GAAGAC 1 cut(s) 189
BpmI CTGGAG 1 cut(s) 42
BsaJI CCNNGG 1 cut(s) 139
BsaWI WCCGGW 1 cut(s) 87
Bsc4I CCNNNNNNNGG 1 cut(s) 107
Bse118I RCCGGY 1 cut(s) 235
Bse1I ACTGG 1 cut(s) 163
BseDI CCNNGG 1 cut(s) 139
BseLI CCNNNNNNNGG 1 cut(s) 107
BseMII CTCAG 1 cut(s) 206
BseNI ACTGG 1 cut(s) 163
BseSI GKGCMC 1 cut(s) 73
BseXI GCAGC 1 cut(s) 33
Bsh1236I CGCG 1 cut(s) 213
BshFI GGCC 2 cut(s) 37, 310
BsiHKAI GWGCWC 2 cut(s) 73, 193
BsiSI CCGG 2 cut(s) 88, 236
BslI CCNNNNNNNGG 1 cut(s) 107
BsmI GAATGC 1 cut(s) 144
BsnI GGCC 2 cut(s) 37, 310
Bsp1286I GDGCHC 2 cut(s) 73, 193
Bsp143I GATC 1 cut(s) 128
BspACI CCGC 2 cut(s) 216, 233
BspANI GGCC 2 cut(s) 37, 310
BspCNI CTCAG 1 cut(s) 205
BspFNI CGCG 1 cut(s) 213
BspMAI CTGCAG 1 cut(s) 298
BspQI GCTCTTC 1 cut(s) 102
BsrFI RCCGGY 1 cut(s) 235
BsrI ACTGG 1 cut(s) 163
BssAI RCCGGY 1 cut(s) 235
BssECI CCNNGG 1 cut(s) 139
BssMI GATC 1 cut(s) 128
BssT1I CCWWGG 1 cut(s) 139
Bst4CI ACNGT 1 cut(s) 316
Bst6I CTCTTC 1 cut(s) 102
BstAPI GCANNNNNTGC 1 cut(s) 68
BstC8I GCNNGC 2 cut(s) 69, 237
BstDEI CTNAG 1 cut(s) 192
BstFNI CGCG 1 cut(s) 213
BstHHI GCGC 1 cut(s) 215
BstKTI GATC 1 cut(s) 131
BstMBI GATC 1 cut(s) 128
BstMWI GCNNNNNNNGC 2 cut(s) 43, 68
BstSFI CTRYAG 2 cut(s) 294, 312
BstSLI GKGCMC 1 cut(s) 73
BstUI CGCG 1 cut(s) 213
BstV1I GCAGC 1 cut(s) 33
BstV2I GAAGAC 1 cut(s) 189
BsuRI GGCC 2 cut(s) 37, 310
BtsIMutI CAGTG 1 cut(s) 193
Cac8I GCNNGC 2 cut(s) 69, 237
CfoI GCGC 1 cut(s) 215
Cfr10I RCCGGY 1 cut(s) 235
Cfr13I GGNCC 1 cut(s) 35
Csp6I GTAC 2 cut(s) 85, 317
CviJI RGCY 8 cut(s) 37, 46, 95, 183, 239, 251, 289, 310
CviKI_1 RGCY 8 cut(s) 37, 46, 95, 183, 239, 251, 289, 310
CviQI GTAC 2 cut(s) 85, 317
DdeI CTNAG 1 cut(s) 192
DpnI GATC 1 cut(s) 130
DpnII GATC 1 cut(s) 128
Eam1104I CTCTTC 1 cut(s) 102
EarI CTCTTC 1 cut(s) 102
Eco130I CCWWGG 1 cut(s) 139
Eco57I CTGAAG 1 cut(s) 169
EcoO109I RGGNCCY 1 cut(s) 35
EcoT14I CCWWGG 1 cut(s) 139
ErhI CCWWGG 1 cut(s) 139
FaiI YATR 3 cut(s) 42, 105, 325
Fnu4HI GCNGC 3 cut(s) 47, 216, 233
Fsp4HI GCNGC 3 cut(s) 47, 216, 233
FspBI CTAG 1 cut(s) 17
GlaI GCGC 1 cut(s) 214
GluI GCNGC 3 cut(s) 47, 216, 233
GsuI CTGGAG 1 cut(s) 42
HaeIII GGCC 2 cut(s) 37, 310
HapII CCGG 2 cut(s) 88, 236
HhaI GCGC 1 cut(s) 215
Hin6I GCGC 1 cut(s) 213
HinP1I GCGC 1 cut(s) 213
HinfI GANTC 1 cut(s) 158
HpaII CCGG 2 cut(s) 88, 236
Hpy166II GTNNAC 4 cut(s) 71, 85, 178, 319
Hpy188I TCNGA 2 cut(s) 169, 303
Hpy188III TCNNGA 1 cut(s) 126
Hpy8I GTNNAC 4 cut(s) 71, 85, 178, 319
HpyCH4III ACNGT 1 cut(s) 316
HpyCH4V TGCA 4 cut(s) 8, 32, 71, 296
HpyF10VI GCNNNNNNNGC 2 cut(s) 43, 68
HpyF3I CTNAG 1 cut(s) 192
HspAI GCGC 1 cut(s) 213
KroI GCCGGC 1 cut(s) 235
KroNI GCCGGC 1 cut(s) 237
Kzo9I GATC 1 cut(s) 128
LguI GCTCTTC 1 cut(s) 102
LpnPI CCDG 5 cut(s) 18, 72, 101, 176, 249
Lsp1109I GCAGC 1 cut(s) 33
LweI GCATC 1 cut(s) 227
MaeI CTAG 1 cut(s) 17
MalI GATC 1 cut(s) 130
MboI GATC 1 cut(s) 128
MboII GAAGA 4 cut(s) 89, 189, 192, 213
MhlI GDGCHC 2 cut(s) 73, 193
MluCI AATT 2 cut(s) 117, 281
MmeI TCCRAC 1 cut(s) 88
MnlI CCTC 2 cut(s) 166, 235
MroNI GCCGGC 1 cut(s) 235
MroXI GAANNNNTTC 1 cut(s) 121
MseI TTAA 1 cut(s) 53
MspI CCGG 2 cut(s) 88, 236
Mva1269I GAATGC 1 cut(s) 144
MvnI CGCG 1 cut(s) 213
MwoI GCNNNNNNNGC 2 cut(s) 43, 68
NaeI GCCGGC 1 cut(s) 237
NdeII GATC 1 cut(s) 128
NgoMIV GCCGGC 1 cut(s) 235
PciSI GCTCTTC 1 cut(s) 102
PctI GAATGC 1 cut(s) 144
PdiI GCCGGC 1 cut(s) 237
PdmI GAANNNNTTC 1 cut(s) 121
PfeI GAWTC 1 cut(s) 158
PkrI GCNGC 3 cut(s) 48, 217, 234
PspPI GGNCC 1 cut(s) 35
PstI CTGCAG 1 cut(s) 298
RsaI GTAC 2 cut(s) 86, 318
RsaNI GTAC 2 cut(s) 85, 317
SapI GCTCTTC 1 cut(s) 102
SaqAI TTAA 1 cut(s) 53
SatI GCNGC 3 cut(s) 47, 216, 233
Sau3AI GATC 1 cut(s) 128
Sau96I GGNCC 1 cut(s) 35
SduI GDGCHC 2 cut(s) 73, 193
SetI ASST 5 cut(s) 30, 141, 177, 185, 253
SfaNI GCATC 1 cut(s) 227
SfcI CTRYAG 2 cut(s) 294, 312
Sse9I AATT 2 cut(s) 117, 281
SsiI CCGC 2 cut(s) 216, 233
SspMI CTAG 1 cut(s) 17
StyI CCWWGG 1 cut(s) 139
TaaI ACNGT 1 cut(s) 316
TaqI TCGA 1 cut(s) 127
TasI AATT 2 cut(s) 117, 281
TatI WGTACW 1 cut(s) 316
TauI GCSGC 2 cut(s) 218, 235
TfiI GAWTC 1 cut(s) 158
Tru1I TTAA 1 cut(s) 53
Tru9I TTAA 1 cut(s) 53
TscAI CASTG 1 cut(s) 193
TseI GCWGC 1 cut(s) 46
TspDTI ATGAA 2 cut(s) 67, 294
TspRI CASTG 1 cut(s) 193
VneI GTGCAC 1 cut(s) 69
XmnI GAANNNNTTC 1 cut(s) 121
XspI CTAG 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.