Rh4DG011400

Peroxisome biogenesis factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0019407
Physical Location & Seq
Reverse (-)
1822021 .. 1822925
905 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG011400.1

Sequence Viewer

Length: 433 bp
ATGATTTCCGGTCTCGATTGGAAGCTTGCCGGCGGTGTCATGCTGACGACATCTTCTCCATCAAAGGACGTCAGTTCTCGAGCTGCTAACCGTGGCATTCTCCTTGCTGATTCCCAGTCTGATGAGGTTTACAGCATCAGTGCTTTGATGAGCAATGATGCTCAGTCTTCTTCAATCACTCGTGCCGCGTTTTTCTCCACGCCGCCGCCGGCGTCTGTTTCAGTTCTCAAAAGATTAAAGCAGAGATTGAATGAGTTGTGGCTTTCTGCAGTTCGGAAATGGCCTACGGTTCTCCCTATAGCTCGAGATTTTCTGCAGTTGGTCATATGTGCTAACCTGACGTTCTTTTACTTTGAAGGTCTCTATTATCATATATCGAAACATGCTGCAGGCATTCGTTATGTGTTCATTGGAAAACCATCTAAGTTTATCA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005829 GO:0006082 GO:0006464 GO:0006513 GO:0006605 GO:0006625 GO:0006629 GO:0006631 GO:0006635 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009790 GO:0009791 GO:0009793 GO:0009853 GO:0009987 GO:0010154 GO:0010381 GO:0015031 GO:0015833 GO:0015919 GO:0016020 GO:0016042 GO:0016043 GO:0016054 GO:0016558 GO:0016567 GO:0016740 GO:0017038 GO:0019395 GO:0019538 GO:0019752 GO:0019787 GO:0022406 GO:0022414 GO:0030258 GO:0031090 GO:0031903 GO:0032446 GO:0032501 GO:0032502 GO:0032787 GO:0033036 GO:0033365 GO:0034440 GO:0034613 GO:0036211 GO:0042579 GO:0042886 GO:0043094 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0043574 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045184 GO:0046395 GO:0046907 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0055085 GO:0055114 GO:0061458 GO:0065002 GO:0070647 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072329 GO:0072594 GO:0072662 GO:0072663 GO:0098588 GO:0098805 GO:0140056 GO:0140096 GO:1901564 GO:1901575
KEGG Pathways
Metabolic & Signaling
ko04146 map04146
Pfam Domains
Protein Families
Pex2_Pex12 zf-C3HC4_3 zf-RING_2

Protein Analysis

144

Amino Acids

15.92

Weight (kDa)

9.81

Isoelectric Point (pI)

51.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pex2_Pex12 PF04757 80 - 141 4.5e-08 Pex2 / Pex12 amino terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019407)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0387071
rosa_multiflora Rmu_sc0006648.1_g000010
rosa_samantha Rh4CG014400 Rh4CG014700 Rh4CG015200 Rh4CG015700 Rh4CG016100 Rh4DG011400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 72
AccII CGCG 1 cut(s) 188
AciI CCGC 4 cut(s) 33, 186, 203, 206
AcyI GRCGYC 2 cut(s) 69, 212
AgsI TTSAA 3 cut(s) 174, 250, 356
AluBI AGCT 3 cut(s) 25, 83, 302
AluI AGCT 3 cut(s) 25, 83, 302
Alw26I GTCTC 2 cut(s) 17, 365
Ama87I CYCGRG 2 cut(s) 78, 303
AoxI GGCC 1 cut(s) 281
ApeKI GCWGC 2 cut(s) 83, 386
AvaI CYCGRG 2 cut(s) 78, 303
BauI CACGAG 1 cut(s) 180
BbsI GAAGAC 1 cut(s) 159
BbvI GCAGC 2 cut(s) 70, 373
BccI CCATC 2 cut(s) 67, 427
BcoDI GTCTC 2 cut(s) 17, 365
BfmI CTRYAG 4 cut(s) 267, 297, 314, 387
BisI GCNGC 5 cut(s) 84, 186, 203, 206, 387
BlsI GCNGC 5 cut(s) 85, 187, 204, 207, 388
BmeT110I CYCGRG 2 cut(s) 78, 303
BmrI ACTGGG 1 cut(s) 109
BmsI GCATC 2 cut(s) 144, 148
BmuI ACTGGG 1 cut(s) 109
BpiI GAAGAC 1 cut(s) 159
BsaHI GRCGYC 2 cut(s) 69, 212
BsaI GGTCTC 2 cut(s) 17, 365
BsaJI CCNNGG 1 cut(s) 91
BsaWI WCCGGW 1 cut(s) 8
BsaXI ACNNNNNCTCC 2 cut(s) 40, 70
Bse118I RCCGGY 2 cut(s) 29, 208
Bse1I ACTGG 1 cut(s) 115
Bse3DI GCAATG 1 cut(s) 160
BseDI CCNNGG 1 cut(s) 91
BseMI GCAATG 1 cut(s) 160
BseMII CTCAG 1 cut(s) 176
BseNI ACTGG 1 cut(s) 115
BseXI GCAGC 2 cut(s) 70, 373
Bsh1236I CGCG 1 cut(s) 188
BshFI GGCC 1 cut(s) 283
BsiHKCI CYCGRG 2 cut(s) 78, 303
BsiSI CCGG 3 cut(s) 9, 30, 209
BsmAI GTCTC 2 cut(s) 17, 365
BsmI GAATGC 2 cut(s) 96, 393
BsnI GGCC 1 cut(s) 283
Bso31I GGTCTC 2 cut(s) 17, 365
BsoBI CYCGRG 2 cut(s) 78, 303
BspACI CCGC 4 cut(s) 33, 186, 203, 206
BspANI GGCC 1 cut(s) 283
BspCNI CTCAG 1 cut(s) 175
BspFNI CGCG 1 cut(s) 188
BspMAI CTGCAG 3 cut(s) 271, 318, 391
BspTNI GGTCTC 2 cut(s) 17, 365
BsrDI GCAATG 1 cut(s) 160
BsrFI RCCGGY 2 cut(s) 29, 208
BsrI ACTGG 1 cut(s) 115
BssAI RCCGGY 2 cut(s) 29, 208
BssECI CCNNGG 1 cut(s) 91
BssNI GRCGYC 2 cut(s) 69, 212
BssSI CACGAG 1 cut(s) 180
Bst2BI CACGAG 1 cut(s) 180
Bst4CI ACNGT 2 cut(s) 92, 289
BstACI GRCGYC 2 cut(s) 69, 212
BstC8I GCNNGC 4 cut(s) 27, 31, 210, 391
BstDEI CTNAG 2 cut(s) 162, 423
BstDSI CCRYGG 1 cut(s) 91
BstFNI CGCG 1 cut(s) 188
BstMAI GTCTC 2 cut(s) 17, 365
BstNSI RCATGY 1 cut(s) 386
BstSFI CTRYAG 4 cut(s) 267, 297, 314, 387
BstUI CGCG 1 cut(s) 188
BstV1I GCAGC 2 cut(s) 70, 373
BstV2I GAAGAC 1 cut(s) 159
BsuRI GGCC 1 cut(s) 283
BtgI CCRYGG 1 cut(s) 91
BtsIMutI CAGTG 1 cut(s) 145
Cac8I GCNNGC 4 cut(s) 27, 31, 210, 391
Cfr10I RCCGGY 2 cut(s) 29, 208
CseI GACGC 1 cut(s) 201
CviAII CATG 2 cut(s) 40, 383
CviJI RGCY 5 cut(s) 25, 83, 262, 283, 302
CviKI_1 RGCY 5 cut(s) 25, 83, 262, 283, 302
DdeI CTNAG 2 cut(s) 162, 423
Eco31I GGTCTC 2 cut(s) 17, 365
Eco88I CYCGRG 2 cut(s) 78, 303
FaeI CATG 2 cut(s) 43, 386
FaiI YATR 8 cut(s) 41, 299, 326, 328, 372, 374, 384, 402
FatI CATG 2 cut(s) 39, 382
FauNDI CATATG 1 cut(s) 326
Fnu4HI GCNGC 5 cut(s) 84, 186, 203, 206, 387
Fsp4HI GCNGC 5 cut(s) 84, 186, 203, 206, 387
GluI GCNGC 5 cut(s) 84, 186, 203, 206, 387
HaeIII GGCC 1 cut(s) 283
HapII CCGG 3 cut(s) 9, 30, 209
HgaI GACGC 1 cut(s) 201
Hin1I GRCGYC 2 cut(s) 69, 212
Hin1II CATG 2 cut(s) 43, 386
HindIII AAGCTT 1 cut(s) 23
HinfI GANTC 1 cut(s) 110
HpaII CCGG 3 cut(s) 9, 30, 209
Hpy166II GTNNAC 1 cut(s) 130
Hpy188I TCNGA 2 cut(s) 121, 276
Hpy188III TCNNGA 3 cut(s) 14, 78, 305
Hpy8I GTNNAC 1 cut(s) 130
HpyAV CCTTC 1 cut(s) 350
HpyCH4III ACNGT 2 cut(s) 92, 289
HpyCH4IV ACGT 2 cut(s) 69, 341
HpyCH4V TGCA 3 cut(s) 269, 316, 389
HpyF3I CTNAG 2 cut(s) 162, 423
HpySE526I ACGT 2 cut(s) 69, 341
Hsp92I GRCGYC 2 cut(s) 69, 212
Hsp92II CATG 2 cut(s) 43, 386
KroI GCCGGC 2 cut(s) 29, 208
KroNI GCCGGC 2 cut(s) 31, 210
LpnPI CCDG 6 cut(s) 22, 43, 128, 222, 350, 375
Lsp1109I GCAGC 2 cut(s) 70, 373
LweI GCATC 2 cut(s) 144, 148
MaeII ACGT 2 cut(s) 69, 341
MboII GAAGA 3 cut(s) 45, 159, 162
MnlI CCTC 1 cut(s) 118
MreI CGCCGGCG 1 cut(s) 208
MroNI GCCGGC 2 cut(s) 29, 208
MseI TTAA 1 cut(s) 236
MspI CCGG 3 cut(s) 9, 30, 209
Mva1269I GAATGC 2 cut(s) 96, 393
MvnI CGCG 1 cut(s) 188
NaeI GCCGGC 2 cut(s) 31, 210
NdeI CATATG 1 cut(s) 326
NgoMIV GCCGGC 2 cut(s) 29, 208
NlaIII CATG 2 cut(s) 43, 386
NspI RCATGY 1 cut(s) 386
PaeR7I CTCGAG 2 cut(s) 78, 303
PctI GAATGC 2 cut(s) 96, 393
PdiI GCCGGC 2 cut(s) 31, 210
PfeI GAWTC 1 cut(s) 110
PkrI GCNGC 5 cut(s) 85, 187, 204, 207, 388
PstI CTGCAG 3 cut(s) 271, 318, 391
SaqAI TTAA 1 cut(s) 236
SatI GCNGC 5 cut(s) 84, 186, 203, 206, 387
SetI ASST 8 cut(s) 27, 72, 85, 129, 304, 339, 344, 361
SfaNI GCATC 2 cut(s) 144, 148
SfcI CTRYAG 4 cut(s) 267, 297, 314, 387
Sfr274I CTCGAG 2 cut(s) 78, 303
SgrAI CRCCGGYG 1 cut(s) 208
SlaI CTCGAG 2 cut(s) 78, 303
SmlI CTYRAG 2 cut(s) 78, 303
SmoI CTYRAG 2 cut(s) 78, 303
SsiI CCGC 4 cut(s) 33, 186, 203, 206
TaaI ACNGT 2 cut(s) 92, 289
TaiI ACGT 2 cut(s) 72, 344
TaqI TCGA 4 cut(s) 15, 79, 304, 377
TauI GCSGC 3 cut(s) 188, 205, 208
TfiI GAWTC 1 cut(s) 110
Tru1I TTAA 1 cut(s) 236
Tru9I TTAA 1 cut(s) 236
TscAI CASTG 1 cut(s) 145
TseI GCWGC 2 cut(s) 83, 386
TspDTI ATGAA 1 cut(s) 397
TspRI CASTG 1 cut(s) 145
XceI RCATGY 1 cut(s) 386
XhoI CTCGAG 2 cut(s) 78, 303
ZraI GACGTC 1 cut(s) 70
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.