Rh4CG016100

Peroxisome biogenesis factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0019407
Physical Location & Seq
Reverse (-)
3111654 .. 3127172
15519 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG016100.1

Sequence Viewer

Length: 348 bp
ATGTTGAGGTCGAGGGAGAGATCTCCTTTGGTCAACGGCGTCAGGAAGTTGGTCTTGGCCTTGTTGCCGCGGAGAGACCTGGCCGTCGTAGACGAGAGCTGCTCCTTCGGCTTGTCAAATGTGCCACACCCTCGTCTTCTTCCACGTTCTCGAGCTGCTAACTGTGGCGTTCTCCTTGCTGATTCCCAGTCTGATGAGGTTTACAGCCTCAGTGCTCAGTTTTCTTCAATCACTCGTGCCGCGTCCTCCTCCACGCTGCCGGCTTCTGTTTCAGCTCTCAAAAGATTGAAGCAGAGATTGAATGAATGGCTTTCTGCAGTTCGGAAATGGCCTACAGTACGCTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005829 GO:0006082 GO:0006464 GO:0006513 GO:0006605 GO:0006625 GO:0006629 GO:0006631 GO:0006635 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009790 GO:0009791 GO:0009793 GO:0009853 GO:0009987 GO:0010154 GO:0010381 GO:0015031 GO:0015833 GO:0015919 GO:0016020 GO:0016042 GO:0016043 GO:0016054 GO:0016558 GO:0016567 GO:0016740 GO:0017038 GO:0019395 GO:0019538 GO:0019752 GO:0019787 GO:0022406 GO:0022414 GO:0030258 GO:0031090 GO:0031903 GO:0032446 GO:0032501 GO:0032502 GO:0032787 GO:0033036 GO:0033365 GO:0034440 GO:0034613 GO:0036211 GO:0042579 GO:0042886 GO:0043094 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0043574 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045184 GO:0046395 GO:0046907 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0055085 GO:0055114 GO:0061458 GO:0065002 GO:0070647 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072329 GO:0072594 GO:0072662 GO:0072663 GO:0098588 GO:0098805 GO:0140056 GO:0140096 GO:1901564 GO:1901575
KEGG Pathways
Metabolic & Signaling
ko04146 map04146
Pfam Domains
Protein Families
Pex2_Pex12 zf-C3HC4_3 zf-RING_2

Protein Analysis

115

Amino Acids

12.7

Weight (kDa)

11.28

Isoelectric Point (pI)

55.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019407)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0387071
rosa_multiflora Rmu_sc0006648.1_g000010
rosa_samantha Rh4CG014400 Rh4CG014700 Rh4CG015200 Rh4CG015700 Rh4CG016100 Rh4DG011400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 83
AccI GTMKAC 1 cut(s) 90
AccII CGCG 2 cut(s) 70, 242
AciI CCGC 3 cut(s) 68, 70, 240
AcoI YGGCCR 1 cut(s) 81
AcyI GRCGYC 1 cut(s) 39
AfaI GTAC 1 cut(s) 339
AgsI TTSAA 3 cut(s) 228, 289, 301
AjnI CCWGG 1 cut(s) 78
AjuI GAANNNNNNNTTGG 2 cut(s) 38, 70
AluBI AGCT 3 cut(s) 99, 155, 275
AluI AGCT 3 cut(s) 99, 155, 275
Alw21I GWGCWC 1 cut(s) 217
Alw26I GTCTC 1 cut(s) 69
Ama87I CYCGRG 1 cut(s) 150
AoxI GGCC 3 cut(s) 57, 81, 329
ApeKI GCWGC 3 cut(s) 99, 155, 256
AvaI CYCGRG 1 cut(s) 150
BauI CACGAG 1 cut(s) 234
BbsI GAAGAC 1 cut(s) 128
Bbv12I GWGCWC 1 cut(s) 217
BbvI GCAGC 3 cut(s) 86, 142, 243
BceAI ACGGC 2 cut(s) 52, 68
BciT130I CCWGG 1 cut(s) 80
BcoDI GTCTC 1 cut(s) 69
BfmI CTRYAG 2 cut(s) 315, 333
BglII AGATCT 1 cut(s) 20
BisI GCNGC 5 cut(s) 68, 100, 156, 240, 257
BlsI GCNGC 5 cut(s) 69, 101, 157, 241, 258
Bme1390I CCNGG 1 cut(s) 80
BmeT110I CYCGRG 1 cut(s) 150
BmrFI CCNGG 1 cut(s) 80
BmrI ACTGGG 1 cut(s) 181
BmuI ACTGGG 1 cut(s) 181
BpiI GAAGAC 1 cut(s) 128
BplI GAGNNNNNCTC 2 cut(s) 86, 118
BsaHI GRCGYC 1 cut(s) 39
BsaI GGTCTC 1 cut(s) 69
BsaJI CCNNGG 1 cut(s) 68
Bse118I RCCGGY 1 cut(s) 259
Bse1I ACTGG 1 cut(s) 187
BseBI CCWGG 1 cut(s) 80
BseDI CCNNGG 1 cut(s) 68
BseMII CTCAG 2 cut(s) 223, 230
BseNI ACTGG 1 cut(s) 187
BseRI GAGGAG 1 cut(s) 238
BseXI GCAGC 3 cut(s) 86, 142, 243
Bsh1236I CGCG 2 cut(s) 70, 242
BshFI GGCC 3 cut(s) 59, 83, 331
BsiHKAI GWGCWC 1 cut(s) 217
BsiHKCI CYCGRG 1 cut(s) 150
BsiSI CCGG 1 cut(s) 260
BsmAI GTCTC 1 cut(s) 69
BsnI GGCC 3 cut(s) 59, 83, 331
Bso31I GGTCTC 1 cut(s) 69
BsoBI CYCGRG 1 cut(s) 150
Bsp1286I GDGCHC 1 cut(s) 217
Bsp143I GATC 1 cut(s) 20
BspACI CCGC 3 cut(s) 68, 70, 240
BspANI GGCC 3 cut(s) 59, 83, 331
BspCNI CTCAG 2 cut(s) 222, 229
BspFNI CGCG 2 cut(s) 70, 242
BspMAI CTGCAG 1 cut(s) 319
BspTNI GGTCTC 1 cut(s) 69
BsrFI RCCGGY 1 cut(s) 259
BsrI ACTGG 1 cut(s) 187
BssAI RCCGGY 1 cut(s) 259
BssECI CCNNGG 1 cut(s) 68
BssMI GATC 1 cut(s) 20
BssNI GRCGYC 1 cut(s) 39
BssSI CACGAG 1 cut(s) 234
Bst2BI CACGAG 1 cut(s) 234
Bst2UI CCWGG 1 cut(s) 80
Bst4CI ACNGT 2 cut(s) 164, 337
BstACI GRCGYC 1 cut(s) 39
BstC8I GCNNGC 1 cut(s) 261
BstDEI CTNAG 2 cut(s) 209, 216
BstDSI CCRYGG 1 cut(s) 68
BstFNI CGCG 2 cut(s) 70, 242
BstKTI GATC 1 cut(s) 23
BstMAI GTCTC 1 cut(s) 69
BstMBI GATC 1 cut(s) 20
BstMWI GCNNNNNNNGC 1 cut(s) 108
BstNI CCWGG 1 cut(s) 80
BstSCI CCNGG 1 cut(s) 78
BstSFI CTRYAG 2 cut(s) 315, 333
BstUI CGCG 2 cut(s) 70, 242
BstV1I GCAGC 3 cut(s) 86, 142, 243
BstV2I GAAGAC 1 cut(s) 128
BstX2I RGATCY 1 cut(s) 20
BstYI RGATCY 1 cut(s) 20
BsuRI GGCC 3 cut(s) 59, 83, 331
BtgI CCRYGG 1 cut(s) 68
BtsIMutI CAGTG 1 cut(s) 217
Cac8I GCNNGC 1 cut(s) 261
Cfr10I RCCGGY 1 cut(s) 259
Cfr42I CCGCGG 1 cut(s) 71
CseI GACGC 2 cut(s) 28, 231
Csp6I GTAC 1 cut(s) 338
CviQI GTAC 1 cut(s) 338
DdeI CTNAG 2 cut(s) 209, 216
DpnI GATC 1 cut(s) 22
DpnII GATC 1 cut(s) 20
DrdI GACNNNNNNGTC 1 cut(s) 83
DseDI GACNNNNNNGTC 1 cut(s) 83
EaeI YGGCCR 1 cut(s) 81
Eco31I GGTCTC 1 cut(s) 69
Eco88I CYCGRG 1 cut(s) 150
EcoRII CCWGG 1 cut(s) 78
FaiI YATR 1 cut(s) 346
FalI AAGNNNNNCTT 2 cut(s) 38, 70
FblI GTMKAC 1 cut(s) 90
Fnu4HI GCNGC 5 cut(s) 68, 100, 156, 240, 257
Fsp4HI GCNGC 5 cut(s) 68, 100, 156, 240, 257
GluI GCNGC 5 cut(s) 68, 100, 156, 240, 257
HaeIII GGCC 3 cut(s) 59, 83, 331
HapII CCGG 1 cut(s) 260
HgaI GACGC 2 cut(s) 28, 231
Hin1I GRCGYC 1 cut(s) 39
HincII GTYRAC 1 cut(s) 34
HindII GTYRAC 1 cut(s) 34
HinfI GANTC 1 cut(s) 182
HpaII CCGG 1 cut(s) 260
Hpy166II GTNNAC 3 cut(s) 34, 91, 202
Hpy188I TCNGA 2 cut(s) 193, 324
Hpy188III TCNNGA 2 cut(s) 43, 150
Hpy8I GTNNAC 3 cut(s) 34, 91, 202
Hpy99I CGWCG 1 cut(s) 89
HpyAV CCTTC 1 cut(s) 115
HpyCH4III ACNGT 2 cut(s) 164, 337
HpyCH4IV ACGT 1 cut(s) 145
HpyCH4V TGCA 1 cut(s) 317
HpyF10VI GCNNNNNNNGC 1 cut(s) 108
HpyF3I CTNAG 2 cut(s) 209, 216
HpySE526I ACGT 1 cut(s) 145
Hsp92I GRCGYC 1 cut(s) 39
KroI GCCGGC 1 cut(s) 259
KroNI GCCGGC 1 cut(s) 261
KspI CCGCGG 1 cut(s) 71
Kzo9I GATC 1 cut(s) 20
LmnI GCTCC 1 cut(s) 107
LpnPI CCDG 5 cut(s) 28, 65, 92, 200, 273
Lsp1109I GCAGC 3 cut(s) 86, 142, 243
MaeII ACGT 1 cut(s) 145
MalI GATC 1 cut(s) 22
MboI GATC 1 cut(s) 20
MboII GAAGA 3 cut(s) 128, 131, 216
MflI RGATCY 1 cut(s) 20
MhlI GDGCHC 1 cut(s) 217
MnlI CCTC 6 cut(s) 6, 141, 190, 218, 256, 259
MroNI GCCGGC 1 cut(s) 259
MspA1I CMGCKG 1 cut(s) 70
MspI CCGG 1 cut(s) 260
MspR9I CCNGG 1 cut(s) 80
MvaI CCWGG 1 cut(s) 80
MvnI CGCG 2 cut(s) 70, 242
MwoI GCNNNNNNNGC 1 cut(s) 108
NaeI GCCGGC 1 cut(s) 261
NdeII GATC 1 cut(s) 20
NgoMIV GCCGGC 1 cut(s) 259
PaeR7I CTCGAG 1 cut(s) 150
PdiI GCCGGC 1 cut(s) 261
PfeI GAWTC 1 cut(s) 182
PkrI GCNGC 5 cut(s) 69, 101, 157, 241, 258
Psp6I CCWGG 1 cut(s) 78
PspGI CCWGG 1 cut(s) 78
PstI CTGCAG 1 cut(s) 319
PsuI RGATCY 1 cut(s) 20
RsaI GTAC 1 cut(s) 339
RsaNI GTAC 1 cut(s) 338
SacII CCGCGG 1 cut(s) 71
SatI GCNGC 5 cut(s) 68, 100, 156, 240, 257
Sau3AI GATC 1 cut(s) 20
ScrFI CCNGG 1 cut(s) 80
SduI GDGCHC 1 cut(s) 217
SetI ASST 7 cut(s) 11, 81, 101, 148, 157, 201, 277
SfcI CTRYAG 2 cut(s) 315, 333
Sfr274I CTCGAG 1 cut(s) 150
Sfr303I CCGCGG 1 cut(s) 71
SgrBI CCGCGG 1 cut(s) 71
SlaI CTCGAG 1 cut(s) 150
SmlI CTYRAG 1 cut(s) 150
SmoI CTYRAG 1 cut(s) 150
SsiI CCGC 3 cut(s) 68, 70, 240
StyD4I CCNGG 1 cut(s) 78
TaaI ACNGT 2 cut(s) 164, 337
TaiI ACGT 1 cut(s) 148
TaqI TCGA 2 cut(s) 11, 151
TauI GCSGC 2 cut(s) 70, 242
TfiI GAWTC 1 cut(s) 182
TscAI CASTG 1 cut(s) 217
TseI GCWGC 3 cut(s) 99, 155, 256
TspDTI ATGAA 1 cut(s) 318
TspRI CASTG 1 cut(s) 217
XhoI CTCGAG 1 cut(s) 150
XmiI GTMKAC 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.