Rh4CG014700

Peroxisome biogenesis factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0019407
Physical Location & Seq
Reverse (-)
2533448 .. 2543061
9614 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG014700.1

Sequence Viewer

Length: 213 bp
ATGGTCACTTCTCGAGCTGCTAACCGTGGCATTCTCCTTGCTGATTCCCAGTCTGATGAGGTTTACAGCATCAGTGCTCAGTCTTCTTCAATCACTCGTGCCGCGTCTTCCTCCACGCCGCCGGCTTCTGTTTCGGCTCTCAAAAGATTGAAGCAGAGATTGAATGAATTGTGGCTTTCTGCAGTTCGGAAATGGACTACAGTACACTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005829 GO:0006082 GO:0006464 GO:0006513 GO:0006605 GO:0006625 GO:0006629 GO:0006631 GO:0006635 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009790 GO:0009791 GO:0009793 GO:0009853 GO:0009987 GO:0010154 GO:0010381 GO:0015031 GO:0015833 GO:0015919 GO:0016020 GO:0016042 GO:0016043 GO:0016054 GO:0016558 GO:0016567 GO:0016740 GO:0017038 GO:0019395 GO:0019538 GO:0019752 GO:0019787 GO:0022406 GO:0022414 GO:0030258 GO:0031090 GO:0031903 GO:0032446 GO:0032501 GO:0032502 GO:0032787 GO:0033036 GO:0033365 GO:0034440 GO:0034613 GO:0036211 GO:0042579 GO:0042886 GO:0043094 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0043574 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045184 GO:0046395 GO:0046907 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0055085 GO:0055114 GO:0061458 GO:0065002 GO:0070647 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072329 GO:0072594 GO:0072662 GO:0072663 GO:0098588 GO:0098805 GO:0140056 GO:0140096 GO:1901564 GO:1901575
KEGG Pathways
Metabolic & Signaling
ko04146 map04146
Pfam Domains
Protein Families
Pex2_Pex12 zf-C3HC4_3 zf-RING_2

Protein Analysis

70

Amino Acids

7.6

Weight (kDa)

10.9

Isoelectric Point (pI)

52.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019407)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0387071
rosa_multiflora Rmu_sc0006648.1_g000010
rosa_samantha Rh4CG014400 Rh4CG014700 Rh4CG015200 Rh4CG015700 Rh4CG016100 Rh4DG011400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 104
AciI CCGC 2 cut(s) 102, 119
AfaI GTAC 1 cut(s) 204
AgsI TTSAA 3 cut(s) 90, 151, 163
AluBI AGCT 1 cut(s) 17
AluI AGCT 1 cut(s) 17
Alw21I GWGCWC 1 cut(s) 79
Ama87I CYCGRG 1 cut(s) 12
ApeKI GCWGC 1 cut(s) 17
AvaI CYCGRG 1 cut(s) 12
BauI CACGAG 1 cut(s) 96
BbsI GAAGAC 2 cut(s) 75, 99
Bbv12I GWGCWC 1 cut(s) 79
BbvI GCAGC 1 cut(s) 4
BfmI CTRYAG 2 cut(s) 180, 198
BisI GCNGC 3 cut(s) 18, 102, 119
BlsI GCNGC 3 cut(s) 19, 103, 120
BmeT110I CYCGRG 1 cut(s) 12
BmrI ACTGGG 1 cut(s) 43
BmsI GCATC 1 cut(s) 78
BmuI ACTGGG 1 cut(s) 43
BpiI GAAGAC 2 cut(s) 75, 99
BsaJI CCNNGG 1 cut(s) 25
Bse118I RCCGGY 1 cut(s) 121
Bse1I ACTGG 1 cut(s) 49
BseDI CCNNGG 1 cut(s) 25
BseMII CTCAG 1 cut(s) 92
BseNI ACTGG 1 cut(s) 49
BseXI GCAGC 1 cut(s) 4
Bsh1236I CGCG 1 cut(s) 104
BsiHKAI GWGCWC 1 cut(s) 79
BsiHKCI CYCGRG 1 cut(s) 12
BsiSI CCGG 1 cut(s) 122
BsmI GAATGC 1 cut(s) 30
BsoBI CYCGRG 1 cut(s) 12
Bsp1286I GDGCHC 1 cut(s) 79
BspACI CCGC 2 cut(s) 102, 119
BspCNI CTCAG 1 cut(s) 91
BspFNI CGCG 1 cut(s) 104
BspMAI CTGCAG 1 cut(s) 184
BsrFI RCCGGY 1 cut(s) 121
BsrI ACTGG 1 cut(s) 49
BssAI RCCGGY 1 cut(s) 121
BssECI CCNNGG 1 cut(s) 25
BssSI CACGAG 1 cut(s) 96
Bst2BI CACGAG 1 cut(s) 96
Bst4CI ACNGT 2 cut(s) 26, 202
BstC8I GCNNGC 1 cut(s) 123
BstDEI CTNAG 1 cut(s) 78
BstDSI CCRYGG 1 cut(s) 25
BstFNI CGCG 1 cut(s) 104
BstSFI CTRYAG 2 cut(s) 180, 198
BstUI CGCG 1 cut(s) 104
BstV1I GCAGC 1 cut(s) 4
BstV2I GAAGAC 2 cut(s) 75, 99
BtgI CCRYGG 1 cut(s) 25
BtsIMutI CAGTG 1 cut(s) 79
Cac8I GCNNGC 1 cut(s) 123
Cfr10I RCCGGY 1 cut(s) 121
CseI GACGC 1 cut(s) 93
Csp6I GTAC 1 cut(s) 203
CviJI RGCY 4 cut(s) 17, 125, 137, 175
CviKI_1 RGCY 4 cut(s) 17, 125, 137, 175
CviQI GTAC 1 cut(s) 203
DdeI CTNAG 1 cut(s) 78
Eco88I CYCGRG 1 cut(s) 12
FaiI YATR 1 cut(s) 211
Fnu4HI GCNGC 3 cut(s) 18, 102, 119
Fsp4HI GCNGC 3 cut(s) 18, 102, 119
GluI GCNGC 3 cut(s) 18, 102, 119
HapII CCGG 1 cut(s) 122
HgaI GACGC 1 cut(s) 93
HinfI GANTC 1 cut(s) 44
HpaII CCGG 1 cut(s) 122
Hpy166II GTNNAC 2 cut(s) 64, 205
Hpy188I TCNGA 2 cut(s) 55, 189
Hpy188III TCNNGA 1 cut(s) 12
Hpy8I GTNNAC 2 cut(s) 64, 205
HpyCH4III ACNGT 2 cut(s) 26, 202
HpyCH4V TGCA 1 cut(s) 182
HpyF3I CTNAG 1 cut(s) 78
KroI GCCGGC 1 cut(s) 121
KroNI GCCGGC 1 cut(s) 123
LpnPI CCDG 2 cut(s) 62, 135
Lsp1109I GCAGC 1 cut(s) 4
LweI GCATC 1 cut(s) 78
MaeIII GTNAC 1 cut(s) 4
MboII GAAGA 3 cut(s) 75, 78, 99
MhlI GDGCHC 1 cut(s) 79
MluCI AATT 1 cut(s) 167
MnlI CCTC 2 cut(s) 52, 121
MroNI GCCGGC 1 cut(s) 121
MspI CCGG 1 cut(s) 122
Mva1269I GAATGC 1 cut(s) 30
MvnI CGCG 1 cut(s) 104
NaeI GCCGGC 1 cut(s) 123
NgoMIV GCCGGC 1 cut(s) 121
NmuCI GTSAC 1 cut(s) 4
PaeR7I CTCGAG 1 cut(s) 12
PctI GAATGC 1 cut(s) 30
PdiI GCCGGC 1 cut(s) 123
PfeI GAWTC 1 cut(s) 44
PkrI GCNGC 3 cut(s) 19, 103, 120
PstI CTGCAG 1 cut(s) 184
RsaI GTAC 1 cut(s) 204
RsaNI GTAC 1 cut(s) 203
SatI GCNGC 3 cut(s) 18, 102, 119
SduI GDGCHC 1 cut(s) 79
SetI ASST 2 cut(s) 19, 63
SfaNI GCATC 1 cut(s) 78
SfcI CTRYAG 2 cut(s) 180, 198
Sfr274I CTCGAG 1 cut(s) 12
SlaI CTCGAG 1 cut(s) 12
SmlI CTYRAG 1 cut(s) 12
SmoI CTYRAG 1 cut(s) 12
Sse9I AATT 1 cut(s) 167
SsiI CCGC 2 cut(s) 102, 119
TaaI ACNGT 2 cut(s) 26, 202
TaqI TCGA 1 cut(s) 13
TasI AATT 1 cut(s) 167
TatI WGTACW 1 cut(s) 202
TauI GCSGC 2 cut(s) 104, 121
TfiI GAWTC 1 cut(s) 44
TscAI CASTG 1 cut(s) 79
TseFI GTSAC 1 cut(s) 4
TseI GCWGC 1 cut(s) 17
Tsp45I GTSAC 1 cut(s) 4
TspDTI ATGAA 1 cut(s) 180
TspRI CASTG 1 cut(s) 79
XhoI CTCGAG 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.