RchiOBHm_Chr4g0387071

Peroxisome biogenesis factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0019407
Physical Location & Seq
Reverse (-)
2356854 .. 2357960
1107 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36041

Sequence Viewer

Length: 327 bp
ATGACTGCAAATAAACTAGAAGTAAAGGTTGCAGGGCCTTATGGGCTGCCTTTAACTCCAGCAAGGCGTGCACTTTTCATTGTGTACCGGACGGCTCTTCCTTATGTTGGAGAAAGAATTAGTTCTCGATCTGCTAACCTTGGCATTCTCCTTGCTGATTCCCAGTCTGATGAGGTTTACAGCTTCAGTGCTCAGTCTTCTTCAATCACTCGCGCCGCATCTTCCTCCACGCCGCCGGCTTCTGTTTCAGCTCTCAAAAGATTGAAGCAGAGATTGAATGAATTGTGGCTTTCTGCAGTTCGGAAATGGCCTACAGTACACTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005829 GO:0006082 GO:0006464 GO:0006513 GO:0006605 GO:0006625 GO:0006629 GO:0006631 GO:0006635 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009790 GO:0009791 GO:0009793 GO:0009853 GO:0009987 GO:0010154 GO:0010381 GO:0015031 GO:0015833 GO:0015919 GO:0016020 GO:0016042 GO:0016043 GO:0016054 GO:0016558 GO:0016567 GO:0016740 GO:0017038 GO:0019395 GO:0019538 GO:0019752 GO:0019787 GO:0022406 GO:0022414 GO:0030258 GO:0031090 GO:0031903 GO:0032446 GO:0032501 GO:0032502 GO:0032787 GO:0033036 GO:0033365 GO:0034440 GO:0034613 GO:0036211 GO:0042579 GO:0042886 GO:0043094 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0043574 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045184 GO:0046395 GO:0046907 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0055085 GO:0055114 GO:0061458 GO:0065002 GO:0070647 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072329 GO:0072594 GO:0072662 GO:0072663 GO:0098588 GO:0098805 GO:0140056 GO:0140096 GO:1901564 GO:1901575
KEGG Pathways
Metabolic & Signaling
ko04146 map04146
Pfam Domains
Protein Families
Pex2_Pex12 zf-C3HC4_3 zf-RING_2

Protein Analysis

108

Amino Acids

11.79

Weight (kDa)

10.47

Isoelectric Point (pI)

51.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019407)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0387071
rosa_multiflora Rmu_sc0006648.1_g000010
rosa_samantha Rh4CG014400 Rh4CG014700 Rh4CG015200 Rh4CG015700 Rh4CG016100 Rh4DG011400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 213
AciI CCGC 2 cut(s) 216, 233
AcuI CTGAAG 1 cut(s) 169
AfaI GTAC 2 cut(s) 86, 318
AfiI CCNNNNNNNGG 1 cut(s) 107
AgsI TTSAA 3 cut(s) 204, 265, 277
AluBI AGCT 2 cut(s) 183, 251
AluI AGCT 2 cut(s) 183, 251
Alw21I GWGCWC 2 cut(s) 73, 193
Alw44I GTGCAC 1 cut(s) 69
AoxI GGCC 2 cut(s) 35, 308
ApaLI GTGCAC 1 cut(s) 69
ApeKI GCWGC 1 cut(s) 46
Asp700I GAANNNNTTC 1 cut(s) 121
AspLEI GCGC 1 cut(s) 215
AspS9I GGNCC 1 cut(s) 35
BaeGI GKGCMC 1 cut(s) 73
BbsI GAAGAC 1 cut(s) 189
Bbv12I GWGCWC 2 cut(s) 73, 193
BbvI GCAGC 1 cut(s) 33
BceAI ACGGC 1 cut(s) 108
BfaI CTAG 1 cut(s) 17
BfmI CTRYAG 2 cut(s) 294, 312
BglI GCCNNNNNGGC 1 cut(s) 43
BisI GCNGC 3 cut(s) 47, 216, 233
BlsI GCNGC 3 cut(s) 48, 217, 234
BmgT120I GGNCC 1 cut(s) 35
BmrI ACTGGG 1 cut(s) 157
BmsI GCATC 1 cut(s) 227
BmuI ACTGGG 1 cut(s) 157
BpiI GAAGAC 1 cut(s) 189
BpmI CTGGAG 1 cut(s) 42
BsaJI CCNNGG 1 cut(s) 139
BsaWI WCCGGW 1 cut(s) 87
Bsc4I CCNNNNNNNGG 1 cut(s) 107
Bse118I RCCGGY 1 cut(s) 235
Bse1I ACTGG 1 cut(s) 163
BseDI CCNNGG 1 cut(s) 139
BseLI CCNNNNNNNGG 1 cut(s) 107
BseMII CTCAG 1 cut(s) 206
BseNI ACTGG 1 cut(s) 163
BseSI GKGCMC 1 cut(s) 73
BseXI GCAGC 1 cut(s) 33
Bsh1236I CGCG 1 cut(s) 213
BshFI GGCC 2 cut(s) 37, 310
BsiHKAI GWGCWC 2 cut(s) 73, 193
BsiSI CCGG 2 cut(s) 88, 236
BslI CCNNNNNNNGG 1 cut(s) 107
BsmI GAATGC 1 cut(s) 144
BsnI GGCC 2 cut(s) 37, 310
Bsp1286I GDGCHC 2 cut(s) 73, 193
Bsp143I GATC 1 cut(s) 128
BspACI CCGC 2 cut(s) 216, 233
BspANI GGCC 2 cut(s) 37, 310
BspCNI CTCAG 1 cut(s) 205
BspFNI CGCG 1 cut(s) 213
BspMAI CTGCAG 1 cut(s) 298
BspQI GCTCTTC 1 cut(s) 102
BsrFI RCCGGY 1 cut(s) 235
BsrI ACTGG 1 cut(s) 163
BssAI RCCGGY 1 cut(s) 235
BssECI CCNNGG 1 cut(s) 139
BssMI GATC 1 cut(s) 128
BssT1I CCWWGG 1 cut(s) 139
Bst4CI ACNGT 1 cut(s) 316
Bst6I CTCTTC 1 cut(s) 102
BstAPI GCANNNNNTGC 1 cut(s) 68
BstC8I GCNNGC 2 cut(s) 69, 237
BstDEI CTNAG 1 cut(s) 192
BstFNI CGCG 1 cut(s) 213
BstHHI GCGC 1 cut(s) 215
BstKTI GATC 1 cut(s) 131
BstMBI GATC 1 cut(s) 128
BstMWI GCNNNNNNNGC 2 cut(s) 43, 68
BstSFI CTRYAG 2 cut(s) 294, 312
BstSLI GKGCMC 1 cut(s) 73
BstUI CGCG 1 cut(s) 213
BstV1I GCAGC 1 cut(s) 33
BstV2I GAAGAC 1 cut(s) 189
BsuRI GGCC 2 cut(s) 37, 310
BtsIMutI CAGTG 1 cut(s) 193
Cac8I GCNNGC 2 cut(s) 69, 237
CfoI GCGC 1 cut(s) 215
Cfr10I RCCGGY 1 cut(s) 235
Cfr13I GGNCC 1 cut(s) 35
Csp6I GTAC 2 cut(s) 85, 317
CviJI RGCY 8 cut(s) 37, 46, 95, 183, 239, 251, 289, 310
CviKI_1 RGCY 8 cut(s) 37, 46, 95, 183, 239, 251, 289, 310
CviQI GTAC 2 cut(s) 85, 317
DdeI CTNAG 1 cut(s) 192
DpnI GATC 1 cut(s) 130
DpnII GATC 1 cut(s) 128
Eam1104I CTCTTC 1 cut(s) 102
EarI CTCTTC 1 cut(s) 102
Eco130I CCWWGG 1 cut(s) 139
Eco57I CTGAAG 1 cut(s) 169
EcoO109I RGGNCCY 1 cut(s) 35
EcoT14I CCWWGG 1 cut(s) 139
ErhI CCWWGG 1 cut(s) 139
FaiI YATR 3 cut(s) 42, 105, 325
Fnu4HI GCNGC 3 cut(s) 47, 216, 233
Fsp4HI GCNGC 3 cut(s) 47, 216, 233
FspBI CTAG 1 cut(s) 17
GlaI GCGC 1 cut(s) 214
GluI GCNGC 3 cut(s) 47, 216, 233
GsuI CTGGAG 1 cut(s) 42
HaeIII GGCC 2 cut(s) 37, 310
HapII CCGG 2 cut(s) 88, 236
HhaI GCGC 1 cut(s) 215
Hin6I GCGC 1 cut(s) 213
HinP1I GCGC 1 cut(s) 213
HinfI GANTC 1 cut(s) 158
HpaII CCGG 2 cut(s) 88, 236
Hpy166II GTNNAC 4 cut(s) 71, 85, 178, 319
Hpy188I TCNGA 2 cut(s) 169, 303
Hpy188III TCNNGA 1 cut(s) 126
Hpy8I GTNNAC 4 cut(s) 71, 85, 178, 319
HpyCH4III ACNGT 1 cut(s) 316
HpyCH4V TGCA 4 cut(s) 8, 32, 71, 296
HpyF10VI GCNNNNNNNGC 2 cut(s) 43, 68
HpyF3I CTNAG 1 cut(s) 192
HspAI GCGC 1 cut(s) 213
KroI GCCGGC 1 cut(s) 235
KroNI GCCGGC 1 cut(s) 237
Kzo9I GATC 1 cut(s) 128
LguI GCTCTTC 1 cut(s) 102
LpnPI CCDG 5 cut(s) 18, 72, 101, 176, 249
Lsp1109I GCAGC 1 cut(s) 33
LweI GCATC 1 cut(s) 227
MaeI CTAG 1 cut(s) 17
MalI GATC 1 cut(s) 130
MboI GATC 1 cut(s) 128
MboII GAAGA 4 cut(s) 89, 189, 192, 213
MhlI GDGCHC 2 cut(s) 73, 193
MluCI AATT 2 cut(s) 117, 281
MmeI TCCRAC 1 cut(s) 88
MnlI CCTC 2 cut(s) 166, 235
MroNI GCCGGC 1 cut(s) 235
MroXI GAANNNNTTC 1 cut(s) 121
MseI TTAA 1 cut(s) 53
MspI CCGG 2 cut(s) 88, 236
Mva1269I GAATGC 1 cut(s) 144
MvnI CGCG 1 cut(s) 213
MwoI GCNNNNNNNGC 2 cut(s) 43, 68
NaeI GCCGGC 1 cut(s) 237
NdeII GATC 1 cut(s) 128
NgoMIV GCCGGC 1 cut(s) 235
PciSI GCTCTTC 1 cut(s) 102
PctI GAATGC 1 cut(s) 144
PdiI GCCGGC 1 cut(s) 237
PdmI GAANNNNTTC 1 cut(s) 121
PfeI GAWTC 1 cut(s) 158
PkrI GCNGC 3 cut(s) 48, 217, 234
PspPI GGNCC 1 cut(s) 35
PstI CTGCAG 1 cut(s) 298
RsaI GTAC 2 cut(s) 86, 318
RsaNI GTAC 2 cut(s) 85, 317
SapI GCTCTTC 1 cut(s) 102
SaqAI TTAA 1 cut(s) 53
SatI GCNGC 3 cut(s) 47, 216, 233
Sau3AI GATC 1 cut(s) 128
Sau96I GGNCC 1 cut(s) 35
SduI GDGCHC 2 cut(s) 73, 193
SetI ASST 5 cut(s) 30, 141, 177, 185, 253
SfaNI GCATC 1 cut(s) 227
SfcI CTRYAG 2 cut(s) 294, 312
Sse9I AATT 2 cut(s) 117, 281
SsiI CCGC 2 cut(s) 216, 233
SspMI CTAG 1 cut(s) 17
StyI CCWWGG 1 cut(s) 139
TaaI ACNGT 1 cut(s) 316
TaqI TCGA 1 cut(s) 127
TasI AATT 2 cut(s) 117, 281
TatI WGTACW 1 cut(s) 316
TauI GCSGC 2 cut(s) 218, 235
TfiI GAWTC 1 cut(s) 158
Tru1I TTAA 1 cut(s) 53
Tru9I TTAA 1 cut(s) 53
TscAI CASTG 1 cut(s) 193
TseI GCWGC 1 cut(s) 46
TspDTI ATGAA 2 cut(s) 67, 294
TspRI CASTG 1 cut(s) 193
VneI GTGCAC 1 cut(s) 69
XmnI GAANNNNTTC 1 cut(s) 121
XspI CTAG 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.