Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006648.1

Orthogroup ID

OG0019407

Physical Location & Seq

Genomic Coordinates Forward (+)

50987 .. 55057

Gene Structure 4071 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006648.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

atgcattgcttcagaagggaattggcaccttctcgaattagttctcgggctgctaaccgtggcattctccttgctgattcccagtctgatgaggtttgcagcatcagtgcttcgatgagcaatgatgctcaatcttcttcaatcactcgtgccgcgtcttcctccacgccgcccgcggcgtctgtttcagctctcaaaagattgaagcagagattgaatgagttgtggctgtctgcagttcggaaatggcctacggtgtcttcggactcatcctttggtgttctgtgtcccggaaatgaggttccagagtgtgacacgcagctcgggacagctttatttgacatgtttgctagatgtggcgatcctcaaagtgcaatgaaggctttcgataacatggcaagaagagatgtttgtgcttgggcagcagccattggagcaatggtcatgcaaggaaatggggagcgagcgctagagctttttgatgacatgcttaagcaagaggtgaaaccagatgaagtatctttgtggcaaacctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

178

Amino Acids

19.32

Weight (kDa)

5.46

Isoelectric Point (pI)

57.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019407)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0387071
rosa_multiflora	Rmu_sc0006648.1_g000010
rosa_samantha	Rh4CG014400 Rh4CG014700 Rh4CG015200 Rh4CG015700 Rh4CG016100 Rh4DG011400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	25
AccII	CGCG	2 cut(s)	155, 176
AciI	CCGC	4 cut(s)	153, 170, 174, 176
AclWI	GGATC	1 cut(s)	356
AcyI	GRCGYC	1 cut(s)	179
AfeI	AGCGCT	1 cut(s)	468
AflII	CTTAAG	1 cut(s)	491
AflIII	ACRYGT	1 cut(s)	342
AgsI	TTSAA	3 cut(s)	141, 205, 217
AloI	GAACNNNNNNTCC	2 cut(s)	285, 317
AluBI	AGCT	4 cut(s)	191, 322, 332, 475
AluI	AGCT	4 cut(s)	191, 322, 332, 475
AlwI	GGATC	1 cut(s)	356
Ama87I	CYCGRG	2 cut(s)	45, 323
Aor51HI	AGCGCT	1 cut(s)	468
AoxI	GGCC	1 cut(s)	248
ApeKI	GCWGC	5 cut(s)	50, 99, 319, 422, 425
ArsI	GACNNNNNNTTYG	2 cut(s)	257, 289
Asp700I	GAANNNNTTC	2 cut(s)	40, 383
AspLEI	GCGC	1 cut(s)	469
AsuC2I	CCSGG	1 cut(s)	291
AsuHPI	GGTGA	1 cut(s)	514
AvaI	CYCGRG	2 cut(s)	45, 323
BanI	GGYRCC	1 cut(s)	25
BauI	CACGAG	1 cut(s)	147
BbsI	GAAGAC	2 cut(s)	150, 252
BbvI	GCAGC	5 cut(s)	37, 111, 331, 434, 437
BcnI	CCSGG	1 cut(s)	291
BfaI	CTAG	2 cut(s)	351, 470
BfmI	CTRYAG	1 cut(s)	234
BfoI	RGCGCY	1 cut(s)	470
BfrI	CTTAAG	1 cut(s)	491
BisI	GCNGC	8 cut(s)	51, 100, 153, 170, 177, 320, 423, 426
BlsI	GCNGC	8 cut(s)	52, 101, 154, 171, 178, 321, 424, 427
Bme1390I	CCNGG	1 cut(s)	291
BmeT110I	CYCGRG	2 cut(s)	45, 323
BmiI	GGNNCC	2 cut(s)	27, 303
BmrFI	CCNGG	1 cut(s)	291
BmrI	ACTGGG	1 cut(s)	76
BmsI	GCATC	2 cut(s)	111, 115
BmuI	ACTGGG	1 cut(s)	76
BpiI	GAAGAC	2 cut(s)	150, 252
BpuMI	CCSGG	1 cut(s)	291
BsaHI	GRCGYC	1 cut(s)	179
BsaJI	CCNNGG	2 cut(s)	58, 174
BsaXI	ACNNNNNCTCC	2 cut(s)	426, 456
Bse1I	ACTGG	1 cut(s)	82
Bse3DI	GCAATG	4 cut(s)	4, 127, 381, 444
BseDI	CCNNGG	2 cut(s)	58, 174
BseGI	GGATG	1 cut(s)	269
BseMI	GCAATG	4 cut(s)	4, 127, 381, 444
BseNI	ACTGG	1 cut(s)	82
BseXI	GCAGC	5 cut(s)	37, 111, 331, 434, 437
Bsh1236I	CGCG	2 cut(s)	155, 176
BshFI	GGCC	1 cut(s)	250
BshNI	GGYRCC	1 cut(s)	25
BsiHKCI	CYCGRG	2 cut(s)	45, 323
BsiSI	CCGG	1 cut(s)	291
BslFI	GGGAC	2 cut(s)	273, 340
BsmFI	GGGAC	2 cut(s)	273, 340
BsmI	GAATGC	1 cut(s)	63
BsnI	GGCC	1 cut(s)	250
BsoBI	CYCGRG	2 cut(s)	45, 323
Bsp143I	GATC	1 cut(s)	361
BspACI	CCGC	4 cut(s)	153, 170, 174, 176
BspANI	GGCC	1 cut(s)	250
BspFNI	CGCG	2 cut(s)	155, 176
BspLI	GGNNCC	2 cut(s)	27, 303
BspMAI	CTGCAG	1 cut(s)	238
BspPI	GGATC	1 cut(s)	356
BspT107I	GGYRCC	1 cut(s)	25
BspTI	CTTAAG	1 cut(s)	491
BsrDI	GCAATG	4 cut(s)	4, 127, 381, 444
BsrI	ACTGG	1 cut(s)	82
BssECI	CCNNGG	2 cut(s)	58, 174
BssMI	GATC	1 cut(s)	361
BssNI	GRCGYC	1 cut(s)	179
BssSI	CACGAG	1 cut(s)	147
Bst2BI	CACGAG	1 cut(s)	147
Bst4CI	ACNGT	2 cut(s)	59, 256
Bst6I	CTCTTC	1 cut(s)	397
BstACI	GRCGYC	1 cut(s)	179
BstAFI	CTTAAG	1 cut(s)	491
BstC8I	GCNNGC	2 cut(s)	174, 465
BstDSI	CCRYGG	2 cut(s)	58, 174
BstF5I	GGATG	1 cut(s)	269
BstFNI	CGCG	2 cut(s)	155, 176
BstH2I	RGCGCY	1 cut(s)	470
BstHHI	GCGC	1 cut(s)	469
BstKTI	GATC	1 cut(s)	364
BstMBI	GATC	1 cut(s)	361
BstMWI	GCNNNNNNNGC	3 cut(s)	380, 422, 434
BstNSI	RCATGY	2 cut(s)	346, 490
BstSCI	CCNGG	1 cut(s)	289
BstSFI	CTRYAG	1 cut(s)	234
BstUI	CGCG	2 cut(s)	155, 176
BstV1I	GCAGC	5 cut(s)	37, 111, 331, 434, 437
BstV2I	GAAGAC	2 cut(s)	150, 252
BsuRI	GGCC	1 cut(s)	250
BtgI	CCRYGG	2 cut(s)	58, 174
BtsCI	GGATG	1 cut(s)	269
BtsIMutI	CAGTG	1 cut(s)	112
Cac8I	GCNNGC	2 cut(s)	174, 465
CfoI	GCGC	1 cut(s)	469
Cfr42I	CCGCGG	1 cut(s)	177
CseI	GACGC	2 cut(s)	144, 168
CviAII	CATG	4 cut(s)	343, 394, 445, 487
CviJI	RGCY	9 cut(s)	50, 191, 229, 250, 322, 332, 383, 428, 475
CviKI_1	RGCY	9 cut(s)	50, 191, 229, 250, 322, 332, 383, 428, 475
DpnI	GATC	1 cut(s)	363
DpnII	GATC	1 cut(s)	361
Eam1104I	CTCTTC	1 cut(s)	397
EarI	CTCTTC	1 cut(s)	397
Eco47III	AGCGCT	1 cut(s)	468
Eco88I	CYCGRG	2 cut(s)	45, 323
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	4 cut(s)	346, 397, 448, 490
FaiI	YATR	4 cut(s)	344, 395, 446, 488
FaqI	GGGAC	2 cut(s)	273, 340
FatI	CATG	4 cut(s)	342, 393, 444, 486
FauI	CCCGC	1 cut(s)	181
Fnu4HI	GCNGC	8 cut(s)	51, 100, 153, 170, 177, 320, 423, 426
FokI	GGATG	1 cut(s)	256
Fsp4HI	GCNGC	8 cut(s)	51, 100, 153, 170, 177, 320, 423, 426
FspBI	CTAG	2 cut(s)	351, 470
GlaI	GCGC	1 cut(s)	468
GluI	GCNGC	8 cut(s)	51, 100, 153, 170, 177, 320, 423, 426
HaeII	RGCGCY	1 cut(s)	470
HaeIII	GGCC	1 cut(s)	250
HapII	CCGG	1 cut(s)	291
HgaI	GACGC	2 cut(s)	144, 168
HhaI	GCGC	1 cut(s)	469
Hin1I	GRCGYC	1 cut(s)	179
Hin1II	CATG	4 cut(s)	346, 397, 448, 490
Hin6I	GCGC	1 cut(s)	467
HinP1I	GCGC	1 cut(s)	467
HinfI	GANTC	2 cut(s)	77, 266
HpaII	CCGG	1 cut(s)	291
HphI	GGTGA	1 cut(s)	514
Hpy188I	TCNGA	4 cut(s)	14, 88, 243, 265
Hpy188III	TCNNGA	3 cut(s)	33, 305, 325
HpyAV	CCTTC	3 cut(s)	9, 39, 373
HpyCH4III	ACNGT	2 cut(s)	59, 256
HpyCH4V	TGCA	5 cut(s)	4, 99, 236, 374, 448
HpyF10VI	GCNNNNNNNGC	3 cut(s)	380, 422, 434
Hsp92I	GRCGYC	1 cut(s)	179
Hsp92II	CATG	4 cut(s)	346, 397, 448, 490
HspAI	GCGC	1 cut(s)	467
KspI	CCGCGG	1 cut(s)	177
Kzo9I	GATC	1 cut(s)	361
LmnI	GCTCC	2 cut(s)	434, 460
LpnPI	CCDG	4 cut(s)	95, 304, 318, 522
Lsp1109I	GCAGC	5 cut(s)	37, 111, 331, 434, 437
LweI	GCATC	2 cut(s)	111, 115
MaeI	CTAG	2 cut(s)	351, 470
MaeIII	GTNAC	1 cut(s)	311
MalI	GATC	1 cut(s)	363
MboI	GATC	1 cut(s)	361
MboII	GAAGA	5 cut(s)	126, 129, 150, 252, 414
MluCI	AATT	2 cut(s)	20, 36
MlyI	GAGTC	1 cut(s)	260
MnlI	CCTC	5 cut(s)	85, 172, 292, 375, 493
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	2 cut(s)	40, 383
MseI	TTAA	1 cut(s)	492
MspA1I	CMGCKG	1 cut(s)	176
MspCI	CTTAAG	1 cut(s)	491
MspI	CCGG	1 cut(s)	291
MspR9I	CCNGG	1 cut(s)	291
Mva1269I	GAATGC	1 cut(s)	63
MvnI	CGCG	2 cut(s)	155, 176
MwoI	GCNNNNNNNGC	3 cut(s)	380, 422, 434
NciI	CCSGG	1 cut(s)	291
NdeII	GATC	1 cut(s)	361
NlaIII	CATG	4 cut(s)	346, 397, 448, 490
NlaIV	GGNNCC	2 cut(s)	27, 303
NmuCI	GTSAC	1 cut(s)	311
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	2 cut(s)	346, 490
PciI	ACATGT	1 cut(s)	342
PctI	GAATGC	1 cut(s)	63
PdmI	GAANNNNTTC	2 cut(s)	40, 383
PfeI	GAWTC	1 cut(s)	77
PfoI	TCCNGGA	1 cut(s)	289
PkrI	GCNGC	8 cut(s)	52, 101, 154, 171, 178, 321, 424, 427
PleI	GAGTC	1 cut(s)	260
PpsI	GAGTC	1 cut(s)	260
PscI	ACATGT	1 cut(s)	342
PspN4I	GGNNCC	2 cut(s)	27, 303
PstI	CTGCAG	1 cut(s)	238
SacII	CCGCGG	1 cut(s)	177
SaqAI	TTAA	1 cut(s)	492
SatI	GCNGC	8 cut(s)	51, 100, 153, 170, 177, 320, 423, 426
Sau3AI	GATC	1 cut(s)	361
SchI	GAGTC	1 cut(s)	260
ScrFI	CCNGG	1 cut(s)	291
SetI	ASST	9 cut(s)	31, 96, 193, 303, 324, 334, 477, 504, 536
SfaNI	GCATC	2 cut(s)	111, 115
SfcI	CTRYAG	1 cut(s)	234
Sfr303I	CCGCGG	1 cut(s)	177
SgrBI	CCGCGG	1 cut(s)	177
SmlI	CTYRAG	1 cut(s)	491
SmoI	CTYRAG	1 cut(s)	491
Sse9I	AATT	2 cut(s)	20, 36
SsiI	CCGC	4 cut(s)	153, 170, 174, 176
SspMI	CTAG	2 cut(s)	351, 470
StyD4I	CCNGG	1 cut(s)	289
TaaI	ACNGT	2 cut(s)	59, 256
TaqI	TCGA	3 cut(s)	34, 113, 387
TasI	AATT	2 cut(s)	20, 36
TauI	GCSGC	3 cut(s)	155, 172, 179
TfiI	GAWTC	1 cut(s)	77
Tru1I	TTAA	1 cut(s)	492
Tru9I	TTAA	1 cut(s)	492
TscAI	CASTG	1 cut(s)	112
TseFI	GTSAC	1 cut(s)	311
TseI	GCWGC	5 cut(s)	50, 99, 319, 422, 425
Tsp45I	GTSAC	1 cut(s)	311
TspDTI	ATGAA	2 cut(s)	392, 528
TspRI	CASTG	1 cut(s)	112
Vha464I	CTTAAG	1 cut(s)	491
XceI	RCATGY	2 cut(s)	346, 490
XcmI	CCANNNNNNNNNTGG	1 cut(s)	436
XmnI	GAANNNNTTC	2 cut(s)	40, 383
XspI	CTAG	2 cut(s)	351, 470
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.