Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0018595

Physical Location & Seq

Genomic Coordinates Forward (+)

2762440 .. 2764074

Gene Structure 1635 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGTACTTTAAAAATCTTGCGCGCATTACAACTGGAAGCCAAGCCCTTGTTGAACTACTAATAGGCGGTAATGTTGCTCTCTTAGTTGTTGAATATAGACTTCCTTCTCACATGCATGGAGGGAATGGAAAGGTTGCTTACATCAGATACAGAAGGAACTTTGTATACTTGATTGTTTATGCTTGTGCATATACATACGAGCATCAGTATAATCTGCTTCTTGGTCTAGCTGCAAAAATGGTTGAAGAGCGATTCAGAATTCTGGTTGTGGATTCGGTGATTTCTCTCTTTCGAGGGGATTTTACTGGGAGAGGAGAACTTGGAGATCTCCAGGTCAGTTTCACAGGTTCCCTGCAATGCCTATACTCACTTAGATCTTATGCTCTGCTGTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000150 GO:0000217 GO:0000228 GO:0000280 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0000793 GO:0000794 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0031974 GO:0031981 GO:0033554 GO:0034622 GO:0034641 GO:0035825 GO:0042148 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045003 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0050896 GO:0051026 GO:0051276 GO:0051321 GO:0051716 GO:0061982 GO:0065003 GO:0065004 GO:0070013 GO:0070192 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0098813 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04113 map04113

Pfam Domains

Protein Families

Rad51

Protein Analysis

131

Amino Acids

14.84

Weight (kDa)

9.17

Isoelectric Point (pI)

33.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad51	PF08423	58 - 124	1.5e-18	Rad51

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0018595)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0387531 RchiOBHm_Chr5g0019461 RchiOBHm_Chr5g0075211
rosa_roxburghii	Rroxscaffold_5G00334210
rosa_rugosa	Rorug02G0605100 Rorug05G0148400 Rorug05G0148500 Rorug06G0271900
rosa_wichuraiana	Rw1G037560 Rw2G016590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	394
AccI	GTMKAC	1 cut(s)	165
AccII	CGCG	1 cut(s)	22
AciI	CCGC	1 cut(s)	66
AcsI	RAATTY	1 cut(s)	258
AfaI	GTAC	1 cut(s)	5
AgsI	TTSAA	3 cut(s)	53, 92, 245
AjnI	CCWGG	1 cut(s)	330
AluBI	AGCT	1 cut(s)	230
AluI	AGCT	1 cut(s)	230
ApeKI	GCWGC	1 cut(s)	230
ApoI	RAATTY	1 cut(s)	258
AspLEI	GCGC	2 cut(s)	22, 24
AsuHPI	GGTGA	1 cut(s)	289
BbvI	GCAGC	1 cut(s)	217
BciT130I	CCWGG	1 cut(s)	332
BfaI	CTAG	1 cut(s)	227
BglII	AGATCT	2 cut(s)	325, 374
BisI	GCNGC	1 cut(s)	231
BlsI	GCNGC	1 cut(s)	232
Bme1390I	CCNGG	1 cut(s)	332
BmiI	GGNNCC	1 cut(s)	349
BmrFI	CCNGG	1 cut(s)	332
BmrI	ACTGGG	1 cut(s)	315
BmsI	GCATC	1 cut(s)	211
BmuI	ACTGGG	1 cut(s)	315
BpmI	CTGGAG	1 cut(s)	314
Bse1I	ACTGG	2 cut(s)	37, 310
Bse3DI	GCAATG	1 cut(s)	362
BseBI	CCWGG	1 cut(s)	332
BseMI	GCAATG	1 cut(s)	362
BseNI	ACTGG	2 cut(s)	37, 310
BsePI	GCGCGC	1 cut(s)	20
BseRI	GAGGAG	1 cut(s)	327
BseXI	GCAGC	1 cut(s)	217
Bsh1236I	CGCG	1 cut(s)	22
Bsp143I	GATC	2 cut(s)	325, 374
BspACI	CCGC	1 cut(s)	66
BspFNI	CGCG	1 cut(s)	22
BspLI	GGNNCC	1 cut(s)	349
BspQI	GCTCTTC	1 cut(s)	240
BsrDI	GCAATG	1 cut(s)	362
BsrI	ACTGG	2 cut(s)	37, 310
BssHII	GCGCGC	1 cut(s)	20
BssMI	GATC	2 cut(s)	325, 374
BssNAI	GTATAC	1 cut(s)	166
Bst1107I	GTATAC	1 cut(s)	166
Bst2UI	CCWGG	1 cut(s)	332
Bst6I	CTCTTC	1 cut(s)	240
BstC8I	GCNNGC	1 cut(s)	22
BstDEI	CTNAG	2 cut(s)	82, 371
BstFNI	CGCG	1 cut(s)	22
BstHHI	GCGC	2 cut(s)	22, 24
BstKTI	GATC	2 cut(s)	328, 377
BstMBI	GATC	2 cut(s)	325, 374
BstNI	CCWGG	1 cut(s)	332
BstNSI	RCATGY	1 cut(s)	115
BstSCI	CCNGG	1 cut(s)	330
BstUI	CGCG	1 cut(s)	22
BstV1I	GCAGC	1 cut(s)	217
BstX2I	RGATCY	2 cut(s)	325, 374
BstYI	RGATCY	2 cut(s)	325, 374
BstZ17I	GTATAC	1 cut(s)	166
Cac8I	GCNNGC	1 cut(s)	22
CfoI	GCGC	2 cut(s)	22, 24
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	2 cut(s)	112, 116
CviJI	RGCY	3 cut(s)	39, 44, 230
CviKI_1	RGCY	3 cut(s)	39, 44, 230
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	2 cut(s)	82, 371
DpnI	GATC	2 cut(s)	327, 376
DpnII	GATC	2 cut(s)	325, 374
DraI	TTTAAA	1 cut(s)	10
Eam1104I	CTCTTC	1 cut(s)	240
EarI	CTCTTC	1 cut(s)	240
EcoRI	GAATTC	1 cut(s)	258
EcoRII	CCWGG	1 cut(s)	330
EcoT22I	ATGCAT	1 cut(s)	117
FaeI	CATG	2 cut(s)	115, 119
FatI	CATG	2 cut(s)	111, 115
FblI	GTMKAC	1 cut(s)	165
Fnu4HI	GCNGC	1 cut(s)	231
Fsp4HI	GCNGC	1 cut(s)	231
FspBI	CTAG	1 cut(s)	227
GlaI	GCGC	2 cut(s)	21, 23
GluI	GCNGC	1 cut(s)	231
GsuI	CTGGAG	1 cut(s)	314
HhaI	GCGC	2 cut(s)	22, 24
Hin1II	CATG	2 cut(s)	115, 119
Hin6I	GCGC	2 cut(s)	20, 22
HinP1I	GCGC	2 cut(s)	20, 22
HinfI	GANTC	2 cut(s)	252, 272
HphI	GGTGA	1 cut(s)	289
Hpy166II	GTNNAC	1 cut(s)	166
Hpy188I	TCNGA	2 cut(s)	146, 257
Hpy8I	GTNNAC	1 cut(s)	166
HpyAV	CCTTC	2 cut(s)	114, 147
HpyCH4V	TGCA	4 cut(s)	115, 188, 233, 355
HpyF3I	CTNAG	2 cut(s)	82, 371
Hsp92II	CATG	2 cut(s)	115, 119
HspAI	GCGC	2 cut(s)	20, 22
Kzo9I	GATC	2 cut(s)	325, 374
LguI	GCTCTTC	1 cut(s)	240
LpnPI	CCDG	7 cut(s)	18, 248, 291, 317, 330, 344, 365
Lsp1109I	GCAGC	1 cut(s)	217
LweI	GCATC	1 cut(s)	211
MaeI	CTAG	1 cut(s)	227
MalI	GATC	2 cut(s)	327, 376
MboI	GATC	2 cut(s)	325, 374
MboII	GAAGA	1 cut(s)	257
MflI	RGATCY	2 cut(s)	325, 374
MluCI	AATT	1 cut(s)	258
MnlI	CCTC	3 cut(s)	113, 287, 305
Mph1103I	ATGCAT	1 cut(s)	117
MseI	TTAA	1 cut(s)	9
MslI	CAYNNNNRTG	1 cut(s)	114
MspR9I	CCNGG	1 cut(s)	332
MvaI	CCWGG	1 cut(s)	332
MvnI	CGCG	1 cut(s)	22
NdeII	GATC	2 cut(s)	325, 374
NlaIII	CATG	2 cut(s)	115, 119
NlaIV	GGNNCC	1 cut(s)	349
NsiI	ATGCAT	1 cut(s)	117
NspI	RCATGY	1 cut(s)	115
PauI	GCGCGC	1 cut(s)	20
PciSI	GCTCTTC	1 cut(s)	240
PfeI	GAWTC	2 cut(s)	252, 272
PkrI	GCNGC	1 cut(s)	232
PsiI	TTATAA	1 cut(s)	394
Psp6I	CCWGG	1 cut(s)	330
PspGI	CCWGG	1 cut(s)	330
PspN4I	GGNNCC	1 cut(s)	349
PsrI	GAACNNNNNNTAC	2 cut(s)	149, 181
PsuI	RGATCY	2 cut(s)	325, 374
PteI	GCGCGC	1 cut(s)	20
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
RseI	CAYNNNNRTG	1 cut(s)	114
SapI	GCTCTTC	1 cut(s)	240
SaqAI	TTAA	1 cut(s)	9
SatI	GCNGC	1 cut(s)	231
Sau3AI	GATC	2 cut(s)	325, 374
ScrFI	CCNGG	1 cut(s)	332
SetI	ASST	4 cut(s)	135, 232, 336, 349
SfaNI	GCATC	1 cut(s)	211
SmiMI	CAYNNNNRTG	1 cut(s)	114
Sse9I	AATT	1 cut(s)	258
SsiI	CCGC	1 cut(s)	66
SspMI	CTAG	1 cut(s)	227
StyD4I	CCNGG	1 cut(s)	330
TaqI	TCGA	1 cut(s)	292
TasI	AATT	1 cut(s)	258
TatI	WGTACW	1 cut(s)	3
TfiI	GAWTC	2 cut(s)	252, 272
Tru1I	TTAA	1 cut(s)	9
Tru9I	TTAA	1 cut(s)	9
TseI	GCWGC	1 cut(s)	230
XapI	RAATTY	1 cut(s)	258
XceI	RCATGY	1 cut(s)	115
XmiI	GTMKAC	1 cut(s)	165
XspI	CTAG	1 cut(s)	227
Zsp2I	ATGCAT	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.