Rroxscaffold_5G00334210

DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous recombination

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0018595
Physical Location & Seq
Forward (+)
1548169 .. 1555025
6857 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00334210.1

Sequence Viewer

Length: 291 bp
ATGCACATCAATCCCACATCGAAAACAAGGAAGAAGTCTACCTCTTCCTCACCTATAAAAGAGAAAAATCTTGCGCGCATTACAACTGGAAGCCAAGCCCTTGTTGAACTACTAATAGGCGGTAATGTTGCTCTCTTAGTTGTTGAATATAGAGTTGTGGATTCGGTGATTTCTCTCTTTCGAGGGGATTTTACCGGGAGAGGAGAACTTGGAGATCTCCAGGACAGTTTCACAGGTTCCCTGCAATGCCTATACTCACTTAGATCTTATGCTCTACGTCTTTATCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000150 GO:0000166 GO:0000217 GO:0000228 GO:0000280 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0000781 GO:0000793 GO:0000794 GO:0001541 GO:0001556 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0007140 GO:0007141 GO:0007275 GO:0007276 GO:0007281 GO:0007283 GO:0007286 GO:0007292 GO:0007548 GO:0008094 GO:0008144 GO:0008150 GO:0008152 GO:0008406 GO:0008585 GO:0009314 GO:0009628 GO:0009987 GO:0009994 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019953 GO:0021700 GO:0022402 GO:0022412 GO:0022414 GO:0022607 GO:0030154 GO:0030554 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0032553 GO:0032555 GO:0032559 GO:0033554 GO:0034622 GO:0034641 GO:0035639 GO:0035825 GO:0036094 GO:0042148 GO:0042623 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0044703 GO:0045003 GO:0045132 GO:0045137 GO:0045143 GO:0046483 GO:0046545 GO:0046660 GO:0048232 GO:0048285 GO:0048468 GO:0048469 GO:0048477 GO:0048513 GO:0048515 GO:0048599 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0051276 GO:0051321 GO:0051704 GO:0051716 GO:0061458 GO:0061982 GO:0065003 GO:0065004 GO:0070013 GO:0070192 GO:0071695 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0097367 GO:0098687 GO:0098813 GO:0140013 GO:0140097 GO:1901265 GO:1901360 GO:1901363 GO:1903046
KEGG Pathways
Metabolic & Signaling
ko04113 map04113
Pfam Domains
Protein Families
HHH_5 Rad51

Protein Analysis

96

Amino Acids

10.55

Weight (kDa)

9.51

Isoelectric Point (pI)

47.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad51 PF08423 52 - 87 5.8e-06 Rad51
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 38
AccII CGCG 1 cut(s) 76
AciI CCGC 1 cut(s) 120
AgsI TTSAA 2 cut(s) 107, 146
AjnI CCWGG 1 cut(s) 219
AspLEI GCGC 2 cut(s) 76, 78
AsuC2I CCSGG 1 cut(s) 196
AsuHPI GGTGA 2 cut(s) 42, 178
BciT130I CCWGG 1 cut(s) 221
BcnI CCSGG 1 cut(s) 196
BglII AGATCT 2 cut(s) 214, 263
Bme1390I CCNGG 2 cut(s) 196, 221
BmiI GGNNCC 1 cut(s) 238
BmrFI CCNGG 2 cut(s) 196, 221
BpmI CTGGAG 1 cut(s) 203
BpuMI CCSGG 1 cut(s) 196
Bse1I ACTGG 1 cut(s) 91
Bse3DI GCAATG 1 cut(s) 251
BseBI CCWGG 1 cut(s) 221
BseMI GCAATG 1 cut(s) 251
BseNI ACTGG 1 cut(s) 91
BsePI GCGCGC 1 cut(s) 74
BseRI GAGGAG 1 cut(s) 216
Bsh1236I CGCG 1 cut(s) 76
BsiSI CCGG 1 cut(s) 195
Bsp143I GATC 2 cut(s) 214, 263
BspACI CCGC 1 cut(s) 120
BspFNI CGCG 1 cut(s) 76
BspLI GGNNCC 1 cut(s) 238
BsrDI GCAATG 1 cut(s) 251
BsrI ACTGG 1 cut(s) 91
BssHII GCGCGC 1 cut(s) 74
BssMI GATC 2 cut(s) 214, 263
Bst2UI CCWGG 1 cut(s) 221
Bst4CI ACNGT 1 cut(s) 227
Bst6I CTCTTC 1 cut(s) 49
BstC8I GCNNGC 1 cut(s) 76
BstDEI CTNAG 2 cut(s) 136, 260
BstFNI CGCG 1 cut(s) 76
BstHHI GCGC 2 cut(s) 76, 78
BstKTI GATC 2 cut(s) 217, 266
BstMBI GATC 2 cut(s) 214, 263
BstNI CCWGG 1 cut(s) 221
BstSCI CCNGG 2 cut(s) 194, 219
BstUI CGCG 1 cut(s) 76
BstX2I RGATCY 2 cut(s) 214, 263
BstYI RGATCY 2 cut(s) 214, 263
Cac8I GCNNGC 1 cut(s) 76
CfoI GCGC 2 cut(s) 76, 78
CviJI RGCY 2 cut(s) 93, 98
CviKI_1 RGCY 2 cut(s) 93, 98
DdeI CTNAG 2 cut(s) 136, 260
DpnI GATC 2 cut(s) 216, 265
DpnII GATC 2 cut(s) 214, 263
Eam1104I CTCTTC 1 cut(s) 49
EarI CTCTTC 1 cut(s) 49
EcoRII CCWGG 1 cut(s) 219
FaiI YATR 5 cut(s) 56, 150, 253, 270, 289
FblI GTMKAC 1 cut(s) 38
GlaI GCGC 2 cut(s) 75, 77
GsuI CTGGAG 1 cut(s) 203
HapII CCGG 1 cut(s) 195
HhaI GCGC 2 cut(s) 76, 78
Hin6I GCGC 2 cut(s) 74, 76
HinP1I GCGC 2 cut(s) 74, 76
HinfI GANTC 1 cut(s) 161
HpaII CCGG 1 cut(s) 195
HphI GGTGA 2 cut(s) 42, 178
Hpy166II GTNNAC 1 cut(s) 39
Hpy8I GTNNAC 1 cut(s) 39
HpyCH4III ACNGT 1 cut(s) 227
HpyCH4IV ACGT 1 cut(s) 277
HpyCH4V TGCA 2 cut(s) 4, 244
HpyF3I CTNAG 2 cut(s) 136, 260
HpySE526I ACGT 1 cut(s) 277
HspAI GCGC 2 cut(s) 74, 76
Kzo9I GATC 2 cut(s) 214, 263
LpnPI CCDG 6 cut(s) 72, 206, 208, 219, 233, 254
MaeII ACGT 1 cut(s) 277
MalI GATC 2 cut(s) 216, 265
MboI GATC 2 cut(s) 214, 263
MboII GAAGA 2 cut(s) 36, 43
MflI RGATCY 2 cut(s) 214, 263
MnlI CCTC 4 cut(s) 52, 58, 176, 194
MspI CCGG 1 cut(s) 195
MspR9I CCNGG 2 cut(s) 196, 221
MvaI CCWGG 1 cut(s) 221
MvnI CGCG 1 cut(s) 76
NciI CCSGG 1 cut(s) 196
NdeII GATC 2 cut(s) 214, 263
NlaIV GGNNCC 1 cut(s) 238
PauI GCGCGC 1 cut(s) 74
PfeI GAWTC 1 cut(s) 161
PfoI TCCNGGA 1 cut(s) 219
Psp6I CCWGG 1 cut(s) 219
PspGI CCWGG 1 cut(s) 219
PspN4I GGNNCC 1 cut(s) 238
PsuI RGATCY 2 cut(s) 214, 263
PteI GCGCGC 1 cut(s) 74
Sau3AI GATC 2 cut(s) 214, 263
ScrFI CCNGG 2 cut(s) 196, 221
SetI ASST 4 cut(s) 44, 55, 238, 280
SsiI CCGC 1 cut(s) 120
StyD4I CCNGG 2 cut(s) 194, 219
TaaI ACNGT 1 cut(s) 227
TaiI ACGT 1 cut(s) 280
TaqI TCGA 2 cut(s) 20, 181
TfiI GAWTC 1 cut(s) 161
XmiI GTMKAC 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.