Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0018595

Physical Location & Seq

Genomic Coordinates Reverse (-)

65222179 .. 65223351

Gene Structure 1173 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G037560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGGCTAAAGAGCCATTAAGACTTCTGGTTATGGATTCGGTGATTTCTCTCTTTCGAGTGGATGTTACTGGAAGAGGAGAACTTGGAGATCGCCAGATAGTTCCAAAGATGAAAATGTTGGCTCACTATGCAAAAGAGGAAGATGATGATGAAGTCCACAACTTCTTATTAACAGCTGACAAATTTTTTGGGCTGCAATCTATTGCTACAAGGTCGAGACCCAAAGACACCATCCTCGTCGTGATGAGGATGTTTGTACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000150 GO:0000217 GO:0000228 GO:0000280 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0000793 GO:0000794 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0031974 GO:0031981 GO:0033554 GO:0034622 GO:0034641 GO:0035825 GO:0042148 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045003 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0050896 GO:0051026 GO:0051276 GO:0051321 GO:0051716 GO:0061982 GO:0065003 GO:0065004 GO:0070013 GO:0070192 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0098813 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04113 map04113

Pfam Domains

Protein Families

Rad51

Protein Analysis

87

Amino Acids

9.99

Weight (kDa)

6.72

Isoelectric Point (pI)

52.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad51	PF08423	1 - 43	2.7e-08	Rad51

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0018595)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0387531 RchiOBHm_Chr5g0019461 RchiOBHm_Chr5g0075211
rosa_roxburghii	Rroxscaffold_5G00334210
rosa_rugosa	Rorug02G0605100 Rorug05G0148400 Rorug05G0148500 Rorug06G0271900
rosa_wichuraiana	Rw1G037560 Rw2G016590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	182
AfaI	GTAC	1 cut(s)	258
AluBI	AGCT	1 cut(s)	176
AluI	AGCT	1 cut(s)	176
Alw26I	GTCTC	1 cut(s)	211
ApeKI	GCWGC	1 cut(s)	193
ApoI	RAATTY	1 cut(s)	182
ArsI	GACNNNNNNTTYG	2 cut(s)	170, 202
AsuHPI	GGTGA	1 cut(s)	52
BbvI	GCAGC	1 cut(s)	180
BccI	CCATC	1 cut(s)	239
BcoDI	GTCTC	1 cut(s)	211
BisI	GCNGC	1 cut(s)	194
BlsI	GCNGC	1 cut(s)	195
BsaI	GGTCTC	1 cut(s)	211
Bse1I	ACTGG	1 cut(s)	73
BseGI	GGATG	3 cut(s)	67, 231, 255
BseNI	ACTGG	1 cut(s)	73
BseRI	GAGGAG	1 cut(s)	90
BseXI	GCAGC	1 cut(s)	180
BsmAI	GTCTC	1 cut(s)	211
Bso31I	GGTCTC	1 cut(s)	211
Bsp143I	GATC	1 cut(s)	88
BspTNI	GGTCTC	1 cut(s)	211
BsrI	ACTGG	1 cut(s)	73
BssMI	GATC	1 cut(s)	88
Bst6I	CTCTTC	1 cut(s)	67
BstF5I	GGATG	3 cut(s)	67, 231, 255
BstKTI	GATC	1 cut(s)	91
BstMAI	GTCTC	1 cut(s)	211
BstMBI	GATC	1 cut(s)	88
BstMWI	GCNNNNNNNGC	1 cut(s)	128
BstV1I	GCAGC	1 cut(s)	180
BtsCI	GGATG	3 cut(s)	67, 231, 255
Csp6I	GTAC	1 cut(s)	257
CviJI	RGCY	5 cut(s)	5, 13, 122, 176, 193
CviKI_1	RGCY	5 cut(s)	5, 13, 122, 176, 193
CviQI	GTAC	1 cut(s)	257
DpnI	GATC	1 cut(s)	90
DpnII	GATC	1 cut(s)	88
Eam1104I	CTCTTC	1 cut(s)	67
EarI	CTCTTC	1 cut(s)	67
Eco31I	GGTCTC	1 cut(s)	211
FaiI	YATR	2 cut(s)	32, 129
Fnu4HI	GCNGC	1 cut(s)	194
FokI	GGATG	2 cut(s)	74, 218
Fsp4HI	GCNGC	1 cut(s)	194
GluI	GCNGC	1 cut(s)	194
HinfI	GANTC	1 cut(s)	35
HphI	GGTGA	1 cut(s)	52
Hpy166II	GTNNAC	1 cut(s)	157
Hpy188III	TCNNGA	2 cut(s)	216, 241
Hpy8I	GTNNAC	1 cut(s)	157
Hpy99I	CGWCG	1 cut(s)	242
HpyCH4V	TGCA	2 cut(s)	131, 196
HpyF10VI	GCNNNNNNNGC	1 cut(s)	128
Kzo9I	GATC	1 cut(s)	88
LpnPI	CCDG	3 cut(s)	11, 54, 107
Lsp1109I	GCAGC	1 cut(s)	180
MaeIII	GTNAC	1 cut(s)	64
MalI	GATC	1 cut(s)	90
MboI	GATC	1 cut(s)	88
MboII	GAAGA	2 cut(s)	84, 152
MluCI	AATT	1 cut(s)	182
MnlI	CCTC	4 cut(s)	68, 130, 240, 245
MseI	TTAA	2 cut(s)	17, 170
MspA1I	CMGCKG	1 cut(s)	176
MwoI	GCNNNNNNNGC	1 cut(s)	128
NdeII	GATC	1 cut(s)	88
PfeI	GAWTC	1 cut(s)	35
PkrI	GCNGC	1 cut(s)	195
PvuII	CAGCTG	1 cut(s)	176
RsaI	GTAC	1 cut(s)	258
RsaNI	GTAC	1 cut(s)	257
SaqAI	TTAA	2 cut(s)	17, 170
SatI	GCNGC	1 cut(s)	194
Sau3AI	GATC	1 cut(s)	88
SetI	ASST	2 cut(s)	178, 215
SgeI	CNNG	9 cut(s)	38, 68, 81, 95, 106, 222, 228, 248, 253
Sse9I	AATT	1 cut(s)	182
TaqI	TCGA	2 cut(s)	55, 215
TasI	AATT	1 cut(s)	182
TatI	WGTACW	1 cut(s)	256
TfiI	GAWTC	1 cut(s)	35
Tru1I	TTAA	2 cut(s)	17, 170
Tru9I	TTAA	2 cut(s)	17, 170
TseI	GCWGC	1 cut(s)	193
TspDTI	ATGAA	2 cut(s)	125, 165
XapI	RAATTY	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.