Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0018595

Physical Location & Seq

Genomic Coordinates Reverse (-)

19886210 .. 19887377

Gene Structure 1168 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G016590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGGCTAAAGAGCCATTAAGACTTTTGGTTATGGATTCGGTGATTTCTCTCTTTCGAGTGGATGTTACTGGAAGAGGAGAACTTGGAGATCGCCAGCAAAAACTTGCACGTATGCTTTCCCTTTTAATAAAGATTGCTGAGGAATTCAATGTTGCTGTCTACATGACAAACTACGTAATCAATGCATGTCCTTTTGGAGGCTTATTTGTGCATCTTACTATTGTGCAGTATATAGCAATTCAAGTCTCATCTGGACAATTAAAGAAGAATACCATCAGAACTCTCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000150 GO:0000217 GO:0000228 GO:0000280 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0000793 GO:0000794 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0031974 GO:0031981 GO:0033554 GO:0034622 GO:0034641 GO:0035825 GO:0042148 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045003 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0050896 GO:0051026 GO:0051276 GO:0051321 GO:0051716 GO:0061982 GO:0065003 GO:0065004 GO:0070013 GO:0070192 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0098813 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04113 map04113

Pfam Domains

Protein Families

Rad51

Protein Analysis

96

Amino Acids

10.82

Weight (kDa)

9.58

Isoelectric Point (pI)

25.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad51	PF08423	1 - 62	6e-21	Rad51

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0018595)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0387531 RchiOBHm_Chr5g0019461 RchiOBHm_Chr5g0075211
rosa_roxburghii	Rroxscaffold_5G00334210
rosa_rugosa	Rorug02G0605100 Rorug05G0148400 Rorug05G0148500 Rorug06G0271900
rosa_wichuraiana	Rw1G037560 Rw2G016590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	159
AcsI	RAATTY	1 cut(s)	143
AfiI	CCNNNNNNNGG	1 cut(s)	197
AgsI	TTSAA	2 cut(s)	148, 242
Alw26I	GTCTC	1 cut(s)	250
ApoI	RAATTY	1 cut(s)	143
AsuHPI	GGTGA	1 cut(s)	52
BbvCI	CCTCAGC	1 cut(s)	138
BccI	CCATC	1 cut(s)	281
BcoDI	GTCTC	1 cut(s)	250
BmsI	GCATC	1 cut(s)	220
Bpu10I	CCTNAGC	1 cut(s)	138
BsaAI	YACGTR	2 cut(s)	110, 175
Bsc4I	CCNNNNNNNGG	1 cut(s)	197
Bse1I	ACTGG	1 cut(s)	73
BseGI	GGATG	1 cut(s)	67
BseLI	CCNNNNNNNGG	1 cut(s)	197
BseMII	CTCAG	1 cut(s)	129
BseNI	ACTGG	1 cut(s)	73
BseRI	GAGGAG	1 cut(s)	90
BsgI	GTGCAG	1 cut(s)	245
BslI	CCNNNNNNNGG	1 cut(s)	197
BsmAI	GTCTC	1 cut(s)	250
Bsp143I	GATC	1 cut(s)	88
BspCNI	CTCAG	1 cut(s)	130
BsrI	ACTGG	1 cut(s)	73
BssMI	GATC	1 cut(s)	88
Bst6I	CTCTTC	1 cut(s)	67
BstBAI	YACGTR	2 cut(s)	110, 175
BstC8I	GCNNGC	1 cut(s)	95
BstDEI	CTNAG	1 cut(s)	138
BstENI	CCTNNNNNAGG	1 cut(s)	195
BstF5I	GGATG	1 cut(s)	67
BstKTI	GATC	1 cut(s)	91
BstMAI	GTCTC	1 cut(s)	250
BstMBI	GATC	1 cut(s)	88
BstNSI	RCATGY	1 cut(s)	189
BstSNI	TACGTA	1 cut(s)	175
BtsCI	GGATG	1 cut(s)	67
Cac8I	GCNNGC	1 cut(s)	95
CviAII	CATG	2 cut(s)	163, 186
CviJI	RGCY	3 cut(s)	5, 13, 201
CviKI_1	RGCY	3 cut(s)	5, 13, 201
DdeI	CTNAG	1 cut(s)	138
DpnI	GATC	1 cut(s)	90
DpnII	GATC	1 cut(s)	88
Eam1104I	CTCTTC	1 cut(s)	67
EarI	CTCTTC	1 cut(s)	67
Eco105I	TACGTA	1 cut(s)	175
EcoNI	CCTNNNNNAGG	1 cut(s)	195
EcoRI	GAATTC	1 cut(s)	143
EcoT22I	ATGCAT	1 cut(s)	187
FaeI	CATG	2 cut(s)	166, 189
FaiI	YATR	6 cut(s)	32, 113, 164, 187, 231, 233
FatI	CATG	2 cut(s)	162, 185
FblI	GTMKAC	1 cut(s)	159
FokI	GGATG	1 cut(s)	74
Hin1II	CATG	2 cut(s)	166, 189
HinfI	GANTC	1 cut(s)	35
HphI	GGTGA	1 cut(s)	52
Hpy166II	GTNNAC	1 cut(s)	160
Hpy188I	TCNGA	1 cut(s)	278
Hpy188III	TCNNGA	1 cut(s)	252
Hpy8I	GTNNAC	1 cut(s)	160
HpyCH4IV	ACGT	2 cut(s)	109, 174
HpyCH4V	TGCA	4 cut(s)	107, 185, 211, 226
HpyF3I	CTNAG	1 cut(s)	138
HpySE526I	ACGT	2 cut(s)	109, 174
Hsp92II	CATG	2 cut(s)	166, 189
Kzo9I	GATC	1 cut(s)	88
LpnPI	CCDG	3 cut(s)	54, 107, 237
LweI	GCATC	1 cut(s)	220
MaeII	ACGT	2 cut(s)	109, 174
MaeIII	GTNAC	1 cut(s)	64
MalI	GATC	1 cut(s)	90
MboI	GATC	1 cut(s)	88
MboII	GAAGA	2 cut(s)	84, 277
MluCI	AATT	3 cut(s)	143, 237, 257
MnlI	CCTC	3 cut(s)	68, 133, 191
Mph1103I	ATGCAT	1 cut(s)	187
MseI	TTAA	4 cut(s)	17, 125, 260, 289
NdeII	GATC	1 cut(s)	88
NlaIII	CATG	2 cut(s)	166, 189
NsiI	ATGCAT	1 cut(s)	187
NspI	RCATGY	1 cut(s)	189
PfeI	GAWTC	1 cut(s)	35
Ppu21I	YACGTR	2 cut(s)	110, 175
SaqAI	TTAA	4 cut(s)	17, 125, 260, 289
Sau3AI	GATC	1 cut(s)	88
SetI	ASST	2 cut(s)	112, 177
SfaNI	GCATC	1 cut(s)	220
SnaBI	TACGTA	1 cut(s)	175
Sse9I	AATT	3 cut(s)	143, 237, 257
TaiI	ACGT	2 cut(s)	112, 177
TaqI	TCGA	1 cut(s)	55
TasI	AATT	3 cut(s)	143, 237, 257
TfiI	GAWTC	1 cut(s)	35
Tru1I	TTAA	4 cut(s)	17, 125, 260, 289
Tru9I	TTAA	4 cut(s)	17, 125, 260, 289
XagI	CCTNNNNNAGG	1 cut(s)	195
XapI	RAATTY	1 cut(s)	143
XceI	RCATGY	1 cut(s)	189
XmiI	GTMKAC	1 cut(s)	159
Zsp2I	ATGCAT	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.