Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0018595

Physical Location & Seq

Genomic Coordinates Forward (+)

81034256 .. 81034869

Gene Structure 614 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ34994

Sequence Viewer

CDS Protein Promoter (2k)

Length: 210 bp

ATGCTTTTTGGTCTAGCTGCAAAAATGGCTAAAGAGCCATTAAGACTTCTGGTTATGGATTCGGTGATTTCTCTCTTTCGAGTGGATGTTACTGGAAGAGGAGAACTTGGAGATCGCCAGCAAAAACTTGCACATATGCTTTCCCTTTTAATAAAGATTGCTGAGGAATTCAATGTTGCTGTCCACATGACAAACTACGGTAATCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000150 GO:0000217 GO:0000228 GO:0000280 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0000793 GO:0000794 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0031974 GO:0031981 GO:0033554 GO:0034622 GO:0034641 GO:0035825 GO:0042148 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045003 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0050896 GO:0051026 GO:0051276 GO:0051321 GO:0051716 GO:0061982 GO:0065003 GO:0065004 GO:0070013 GO:0070192 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0098813 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04113 map04113

Pfam Domains

Protein Families

Rad51

Protein Analysis

69

Amino Acids

7.74

Weight (kDa)

8.2

Isoelectric Point (pI)

17.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad51	PF08423	3 - 65	4.4e-21	Rad51

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0018595)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0387531 RchiOBHm_Chr5g0019461 RchiOBHm_Chr5g0075211
rosa_roxburghii	Rroxscaffold_5G00334210
rosa_rugosa	Rorug02G0605100 Rorug05G0148400 Rorug05G0148500 Rorug06G0271900
rosa_wichuraiana	Rw1G037560 Rw2G016590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	167
AgsI	TTSAA	1 cut(s)	172
AluBI	AGCT	1 cut(s)	17
AluI	AGCT	1 cut(s)	17
ApeKI	GCWGC	1 cut(s)	17
ApoI	RAATTY	1 cut(s)	167
AsuHPI	GGTGA	1 cut(s)	76
BbvCI	CCTCAGC	1 cut(s)	162
BbvI	GCAGC	1 cut(s)	4
BfaI	CTAG	1 cut(s)	14
BisI	GCNGC	1 cut(s)	18
BlsI	GCNGC	1 cut(s)	19
Bpu10I	CCTNAGC	1 cut(s)	162
Bse1I	ACTGG	1 cut(s)	97
BseGI	GGATG	1 cut(s)	91
BseMII	CTCAG	1 cut(s)	153
BseNI	ACTGG	1 cut(s)	97
BseRI	GAGGAG	1 cut(s)	114
BseXI	GCAGC	1 cut(s)	4
Bsp143I	GATC	1 cut(s)	112
BspCNI	CTCAG	1 cut(s)	154
BsrI	ACTGG	1 cut(s)	97
BssMI	GATC	1 cut(s)	112
Bst4CI	ACNGT	1 cut(s)	200
Bst6I	CTCTTC	1 cut(s)	91
BstC8I	GCNNGC	1 cut(s)	119
BstDEI	CTNAG	1 cut(s)	162
BstF5I	GGATG	1 cut(s)	91
BstKTI	GATC	1 cut(s)	115
BstMBI	GATC	1 cut(s)	112
BstMWI	GCNNNNNNNGC	1 cut(s)	26
BstV1I	GCAGC	1 cut(s)	4
BtsCI	GGATG	1 cut(s)	91
Cac8I	GCNNGC	1 cut(s)	119
CviAII	CATG	1 cut(s)	187
CviJI	RGCY	3 cut(s)	17, 29, 37
CviKI_1	RGCY	3 cut(s)	17, 29, 37
DdeI	CTNAG	1 cut(s)	162
DpnI	GATC	1 cut(s)	114
DpnII	GATC	1 cut(s)	112
Eam1104I	CTCTTC	1 cut(s)	91
EarI	CTCTTC	1 cut(s)	91
EcoRI	GAATTC	1 cut(s)	167
FaeI	CATG	1 cut(s)	190
FaiI	YATR	4 cut(s)	56, 135, 137, 188
FatI	CATG	1 cut(s)	186
FauNDI	CATATG	1 cut(s)	135
Fnu4HI	GCNGC	1 cut(s)	18
FokI	GGATG	1 cut(s)	98
Fsp4HI	GCNGC	1 cut(s)	18
FspBI	CTAG	1 cut(s)	14
GluI	GCNGC	1 cut(s)	18
Hin1II	CATG	1 cut(s)	190
HinfI	GANTC	1 cut(s)	59
HphI	GGTGA	1 cut(s)	76
Hpy166II	GTNNAC	1 cut(s)	184
Hpy8I	GTNNAC	1 cut(s)	184
HpyCH4III	ACNGT	1 cut(s)	200
HpyCH4V	TGCA	2 cut(s)	20, 131
HpyF10VI	GCNNNNNNNGC	1 cut(s)	26
HpyF3I	CTNAG	1 cut(s)	162
Hsp92II	CATG	1 cut(s)	190
Kzo9I	GATC	1 cut(s)	112
LpnPI	CCDG	3 cut(s)	35, 78, 131
Lsp1109I	GCAGC	1 cut(s)	4
MaeI	CTAG	1 cut(s)	14
MaeIII	GTNAC	1 cut(s)	88
MalI	GATC	1 cut(s)	114
MboI	GATC	1 cut(s)	112
MboII	GAAGA	1 cut(s)	108
MluCI	AATT	1 cut(s)	167
MnlI	CCTC	2 cut(s)	92, 157
MseI	TTAA	2 cut(s)	41, 149
MwoI	GCNNNNNNNGC	1 cut(s)	26
NdeI	CATATG	1 cut(s)	135
NdeII	GATC	1 cut(s)	112
NlaIII	CATG	1 cut(s)	190
PfeI	GAWTC	1 cut(s)	59
PkrI	GCNGC	1 cut(s)	19
SaqAI	TTAA	2 cut(s)	41, 149
SatI	GCNGC	1 cut(s)	18
Sau3AI	GATC	1 cut(s)	112
SetI	ASST	1 cut(s)	19
SgeI	CNNG	8 cut(s)	26, 62, 92, 105, 119, 130, 140, 199
Sse9I	AATT	1 cut(s)	167
SspMI	CTAG	1 cut(s)	14
TaaI	ACNGT	1 cut(s)	200
TaqI	TCGA	1 cut(s)	79
TasI	AATT	1 cut(s)	167
TfiI	GAWTC	1 cut(s)	59
Tru1I	TTAA	2 cut(s)	41, 149
Tru9I	TTAA	2 cut(s)	41, 149
TseI	GCWGC	1 cut(s)	17
XapI	RAATTY	1 cut(s)	167
XspI	CTAG	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.