Rorug06G0271900

Topless-related protein 1-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
41936587 .. 41940297
3711 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0271900.1

Sequence Viewer

Length: 1251 bp
ATGGATTTGGAATCAACCATGGTGAGCTTAAGAAGACAGAAACGCTTGAGGCCATGCTCTGGAAGTAGTTCGGGTGTAGCTTCACTTCCTGGTTTTTGTGACAATGGAACTTCTCTTCAAGCTTCTACCCAGGAAAAACCTGATAATGTGCATCTCACACCTTCAAACAATGTAAATCAATCAGAGGAGGCTTCCCAAAATGAATCATTGAGAGACCCAGCAGCTGCTGAGAGGGTTTTGCTGGACCTACTTGGCCCTGCTTATACCAGGATTATGCAGGCGTATGCTGACTGCGGTCTGAAGAAGAACTTAGCTCACCATGCCCTTGCCTCCTGCCTCCATATTGCTATGTGGCTAAGGGTTACTGGGGATGCCTCTAAGGAGCGAGATGAAGCAATAGCTCATGTTGCAGAGCTGGAGAAAAGAGTTGGAAACTTTGTAGAAACCACTACCAAACAGGAGGCAGTAATCGAGTTTCTGAGGCAACAGGTCCTGGAATACTCTAGCATGAAGAGGGAGTATGAGTCCAAGCTTGATGGTTTGTTAAATGATGTTAGTCAGCAGAGGCAGAAGGCTGAAATGTGGGAGAGTAAGTGGAAGGAGCAGGAGGCCTTGCATCAGGTTAAGGCTACTCGTCTGGAGGAGTTTTCTTGTCACCTGGAAGAGGTCTTGAAGCAGCTTGGGGAAGCCAATGCTGACCTTTCTGAGGTCACTCAGGGCCTTCATGTGGCTAGGGAAGGTATTGAGAAGTTCACAGGTACCTTTACTCAGGCTGAGGTTAAAGTGAAGCAGCTCCAGAAGAGCTGTGAAATGTATAGGGTGCTTCGTGACATGGAGAAGGAAAAGCATACCAAAGAAAGGACTGCTCCAAGTGCTGAGCTCAAGGAGGATCTCCAGAGGAATGAAAACCATAAGCAGAACAAAGATGGTAACATGCTAACCAGGGAGATGATCAAAGAACTCAAAAAGAAGGTGATGAGGTGGGCCCAAGAAAAGTTTCAGGAGGAAGGTGAAGACCGGGACATGGATGGAGAGGGCTCTAATGCATCAAGGGAACAAGTGGAGGGCAGGGATGCTCTGTCTTTCTGGACGATTTGCAATCACTGCAAAATGTACTTTGAGTATCATAGGATTTATCAAAGTAACTTGCTCCTTTGCCAAAACTGTCACAATCTTTTTAATGCTTTAGAAGTTGCTCCACCGCCACAGGTTTCCAGGTCATCCAGTAGGTCTTCTCTCCAGCAACATTAA

Protein Analysis

416

Amino Acids

47.57

Weight (kDa)

6.02

Isoelectric Point (pI)

53.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_20 PF23551 362 - 395 9.6e-09 Zinc beta-ribbon domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 758
AccB1I GGYRCC 1 cut(s) 758
AccB7I CCANNNNNTGG 1 cut(s) 59
AciI CCGC 2 cut(s) 294, 1202
AclWI GGATC 1 cut(s) 897
AcuI CTGAAG 1 cut(s) 320
AfaI GTAC 2 cut(s) 760, 1115
AfiI CCNNNNNNNGG 6 cut(s) 59, 664, 706, 727, 858, 1024
AflII CTTAAG 1 cut(s) 28
AgsI TTSAA 3 cut(s) 119, 165, 673
AjnI CCWGG 7 cut(s) 88, 129, 266, 492, 657, 941, 1214
AjuI GAANNNNNNNTTGG 2 cut(s) 981, 1013
Alw21I GWGCWC 1 cut(s) 882
Alw26I GTCTC 1 cut(s) 207
AlwI GGATC 1 cut(s) 897
AlwNI CAGNNNCTG 3 cut(s) 224, 227, 493
AoxI GGCC 5 cut(s) 50, 253, 609, 718, 984
ApaI GGGCCC 1 cut(s) 988
ApeKI GCWGC 4 cut(s) 221, 224, 676, 790
Asp700I GAANNNNTTC 2 cut(s) 67, 996
Asp718I GGTACC 1 cut(s) 758
AspS9I GGNCC 6 cut(s) 244, 254, 490, 718, 984, 985
AsuC2I CCSGG 1 cut(s) 1019
AsuHPI GGTGA 5 cut(s) 34, 308, 647, 985, 1022
AvaII GGWCC 2 cut(s) 244, 490
BaeGI GKGCMC 1 cut(s) 988
BanI GGYRCC 1 cut(s) 758
BanII GRGCYC 3 cut(s) 882, 988, 1040
BarI GAAGNNNNNNTAC 2 cut(s) 69, 101
BbsI GAAGAC 3 cut(s) 40, 1020, 1224
Bbv12I GWGCWC 1 cut(s) 882
BbvCI CCTCAGC 1 cut(s) 774
BbvI GCAGC 4 cut(s) 211, 233, 688, 802
BccI CCATC 3 cut(s) 530, 920, 1022
BciT130I CCWGG 7 cut(s) 90, 131, 268, 494, 659, 943, 1216
BclI TGATCA 1 cut(s) 951
BcnI CCSGG 1 cut(s) 1019
BcoDI GTCTC 1 cut(s) 207
BfaI CTAG 2 cut(s) 504, 732
BfrI CTTAAG 1 cut(s) 28
BisI GCNGC 4 cut(s) 222, 225, 677, 791
BlpI GCTNAGC 1 cut(s) 876
BlsI GCNGC 4 cut(s) 223, 226, 678, 792
Bme1390I CCNGG 8 cut(s) 90, 131, 268, 494, 659, 943, 1019, 1216
Bme18I GGWCC 2 cut(s) 244, 490
BmgT120I GGNCC 6 cut(s) 244, 254, 490, 718, 984, 985
BmiI GGNNCC 2 cut(s) 760, 986
BmrFI CCNGG 8 cut(s) 90, 131, 268, 494, 659, 943, 1019, 1216
BmrI ACTGGG 1 cut(s) 375
BmsI GCATC 5 cut(s) 160, 361, 625, 1055, 1063
BmuI ACTGGG 1 cut(s) 375
BoxI GACNNNNGTC 1 cut(s) 294
BpiI GAAGAC 3 cut(s) 40, 1020, 1224
BpmI CTGGAG 5 cut(s) 437, 659, 779, 878, 1223
Bpu10I CCTNAGC 2 cut(s) 356, 774
Bpu1102I GCTNAGC 1 cut(s) 876
BpuEI CTTGAG 2 cut(s) 67, 866
BpuMI CCSGG 1 cut(s) 1019
BsaI GGTCTC 1 cut(s) 207
BsaJI CCNNGG 3 cut(s) 18, 129, 942
BsaXI ACNNNNNCTCC 4 cut(s) 509, 539, 578, 608
Bsc4I CCNNNNNNNGG 6 cut(s) 59, 664, 706, 727, 858, 1024
Bse1I ACTGG 2 cut(s) 370, 1224
BseBI CCWGG 7 cut(s) 90, 131, 268, 494, 659, 943, 1216
BseDI CCNNGG 3 cut(s) 18, 129, 942
BseGI GGATG 4 cut(s) 376, 1033, 1078, 1220
BseLI CCNNNNNNNGG 6 cut(s) 59, 664, 706, 727, 858, 1024
BseMII CTCAG 7 cut(s) 219, 470, 696, 728, 765, 782, 867
BseNI ACTGG 2 cut(s) 370, 1224
BseRI GAGGAG 2 cut(s) 200, 656
BseSI GKGCMC 1 cut(s) 988
BseXI GCAGC 4 cut(s) 211, 233, 688, 802
BseYI CCCAGC 1 cut(s) 217
BshFI GGCC 5 cut(s) 52, 255, 611, 720, 986
BshNI GGYRCC 1 cut(s) 758
BsiHKAI GWGCWC 1 cut(s) 882
BsiSI CCGG 1 cut(s) 1018
BslFI GGGAC 1 cut(s) 1034
BslI CCNNNNNNNGG 6 cut(s) 59, 664, 706, 727, 858, 1024
BsmAI GTCTC 1 cut(s) 207
BsmFI GGGAC 1 cut(s) 1034
BsnI GGCC 5 cut(s) 52, 255, 611, 720, 986
Bso31I GGTCTC 1 cut(s) 207
Bsp120I GGGCCC 1 cut(s) 984
Bsp1286I GDGCHC 3 cut(s) 882, 988, 1040
Bsp143I GATC 2 cut(s) 889, 951
Bsp1720I GCTNAGC 1 cut(s) 876
Bsp19I CCATGG 1 cut(s) 18
BspACI CCGC 2 cut(s) 294, 1202
BspANI GGCC 5 cut(s) 52, 255, 611, 720, 986
BspCNI CTCAG 7 cut(s) 220, 471, 697, 727, 766, 781, 868
BspLI GGNNCC 2 cut(s) 760, 986
BspPI GGATC 1 cut(s) 897
BspQI GCTCTTC 1 cut(s) 794
BspT107I GGYRCC 1 cut(s) 758
BspTI CTTAAG 1 cut(s) 28
BspTNI GGTCTC 1 cut(s) 207
BsrI ACTGG 2 cut(s) 370, 1224
BssECI CCNNGG 3 cut(s) 18, 129, 942
BssMI GATC 2 cut(s) 889, 951
BssT1I CCWWGG 1 cut(s) 18
Bst2UI CCWGG 7 cut(s) 90, 131, 268, 494, 659, 943, 1216
Bst4CI ACNGT 1 cut(s) 1166
Bst6I CTCTTC 4 cut(s) 120, 506, 657, 794
BstAFI CTTAAG 1 cut(s) 28
BstAPI GCANNNNNTGC 1 cut(s) 1104
BstC8I GCNNGC 1 cut(s) 279
BstDSI CCRYGG 1 cut(s) 18
BstENI CCTNNNNNAGG 2 cut(s) 662, 704
BstF5I GGATG 4 cut(s) 376, 1033, 1078, 1220
BstKTI GATC 2 cut(s) 892, 954
BstMAI GTCTC 1 cut(s) 207
BstMBI GATC 2 cut(s) 889, 951
BstMWI GCNNNNNNNGC 4 cut(s) 320, 407, 872, 1104
BstNI CCWGG 7 cut(s) 90, 131, 268, 494, 659, 943, 1216
BstNSI RCATGY 1 cut(s) 937
BstPAI GACNNNNGTC 1 cut(s) 294
BstSCI CCNGG 8 cut(s) 88, 129, 266, 492, 657, 941, 1017, 1214
BstSLI GKGCMC 1 cut(s) 988
BstV1I GCAGC 4 cut(s) 211, 233, 688, 802
BstV2I GAAGAC 3 cut(s) 40, 1020, 1224
BstX2I RGATCY 1 cut(s) 889
BstYI RGATCY 1 cut(s) 889
BsuRI GGCC 5 cut(s) 52, 255, 611, 720, 986
BtgI CCRYGG 1 cut(s) 18
BtsCI GGATG 4 cut(s) 376, 1033, 1078, 1220
BtsI GCAGTG 1 cut(s) 1102
BtsIMutI CAGTG 1 cut(s) 1102
Cac8I GCNNGC 1 cut(s) 279
CaiI CAGNNNCTG 3 cut(s) 224, 227, 493
Cfr13I GGNCC 6 cut(s) 244, 254, 490, 718, 984, 985
Csp6I GTAC 2 cut(s) 759, 1114
CviAII CATG 9 cut(s) 19, 54, 320, 404, 508, 725, 832, 934, 1024
CviQI GTAC 2 cut(s) 759, 1114
DpnI GATC 2 cut(s) 891, 953
DpnII GATC 2 cut(s) 889, 951
Eam1104I CTCTTC 4 cut(s) 120, 506, 657, 794
EarI CTCTTC 4 cut(s) 120, 506, 657, 794
Ecl136II GAGCTC 1 cut(s) 880
Eco130I CCWWGG 1 cut(s) 18
Eco147I AGGCCT 1 cut(s) 611
Eco24I GRGCYC 3 cut(s) 882, 988, 1040
Eco31I GGTCTC 1 cut(s) 207
Eco47I GGWCC 2 cut(s) 244, 490
Eco53kI GAGCTC 1 cut(s) 880
Eco57I CTGAAG 1 cut(s) 320
EcoICRI GAGCTC 1 cut(s) 880
EcoNI CCTNNNNNAGG 2 cut(s) 662, 704
EcoO109I RGGNCCY 2 cut(s) 490, 718
EcoRII CCWGG 7 cut(s) 88, 129, 266, 492, 657, 941, 1214
EcoT14I CCWWGG 1 cut(s) 18
EcoT22I ATGCAT 1 cut(s) 1048
EcoT38I GRGCYC 3 cut(s) 882, 988, 1040
ErhI CCWWGG 1 cut(s) 18
FaeI CATG 9 cut(s) 22, 57, 323, 407, 511, 728, 835, 937, 1027
FalI AAGNNNNNCTT 2 cut(s) 293, 325
FaqI GGGAC 1 cut(s) 1034
FatI CATG 9 cut(s) 18, 53, 319, 403, 507, 724, 831, 933, 1023
FbaI TGATCA 1 cut(s) 951
Fnu4HI GCNGC 4 cut(s) 222, 225, 677, 791
FokI GGATG 4 cut(s) 383, 1040, 1085, 1207
FriOI GRGCYC 3 cut(s) 882, 988, 1040
Fsp4HI GCNGC 4 cut(s) 222, 225, 677, 791
FspBI CTAG 2 cut(s) 504, 732
GluI GCNGC 4 cut(s) 222, 225, 677, 791
GsaI CCCAGC 1 cut(s) 221
GsuI CTGGAG 5 cut(s) 437, 659, 779, 878, 1223
HaeIII GGCC 5 cut(s) 52, 255, 611, 720, 986
HapII CCGG 1 cut(s) 1018
Hin1II CATG 9 cut(s) 22, 57, 323, 407, 511, 728, 835, 937, 1027
HindIII AAGCTT 2 cut(s) 120, 530
HinfI GANTC 3 cut(s) 11, 203, 524
HpaII CCGG 1 cut(s) 1018
HphI GGTGA 5 cut(s) 34, 308, 647, 985, 1022
Hpy166II GTNNAC 1 cut(s) 753
Hpy188I TCNGA 4 cut(s) 184, 300, 480, 706
Hpy188III TCNNGA 8 cut(s) 60, 638, 670, 796, 827, 895, 1001, 1087
Hpy8I GTNNAC 1 cut(s) 753
HpyAV CCTTC 8 cut(s) 171, 565, 592, 731, 731, 832, 964, 1001
HpyCH4III ACNGT 1 cut(s) 1166
HpyCH4V TGCA 7 cut(s) 151, 277, 410, 616, 1046, 1098, 1107
HpyF10VI GCNNNNNNNGC 4 cut(s) 320, 407, 872, 1104
Hsp92II CATG 9 cut(s) 22, 57, 323, 407, 511, 728, 835, 937, 1027
KpnI GGTACC 1 cut(s) 762
Ksp22I TGATCA 1 cut(s) 951
Kzo9I GATC 2 cut(s) 889, 951
LguI GCTCTTC 1 cut(s) 794
LmnI GCTCC 6 cut(s) 382, 601, 798, 871, 1155, 1201
Lsp1109I GCAGC 4 cut(s) 211, 233, 688, 802
LweI GCATC 5 cut(s) 160, 361, 625, 1055, 1063
MaeI CTAG 2 cut(s) 504, 732
MaeIII GTNAC 8 cut(s) 98, 361, 653, 709, 827, 929, 1142, 1166
MalI GATC 2 cut(s) 891, 953
MboI GATC 2 cut(s) 889, 951
MboII GAAGA 9 cut(s) 45, 107, 313, 316, 523, 674, 811, 1025, 1224
MflI RGATCY 1 cut(s) 889
MhlI GDGCHC 3 cut(s) 882, 988, 1040
MlyI GAGTC 1 cut(s) 533
MmeI TCCRAC 1 cut(s) 409
Mph1103I ATGCAT 1 cut(s) 1048
MroXI GAANNNNTTC 2 cut(s) 67, 996
MseI TTAA 6 cut(s) 29, 545, 624, 780, 1179, 1249
MspA1I CMGCKG 1 cut(s) 224
MspCI CTTAAG 1 cut(s) 28
MspI CCGG 1 cut(s) 1018
MspR9I CCNGG 8 cut(s) 90, 131, 268, 494, 659, 943, 1019, 1216
MvaI CCWGG 7 cut(s) 90, 131, 268, 494, 659, 943, 1216
MwoI GCNNNNNNNGC 4 cut(s) 320, 407, 872, 1104
NciI CCSGG 1 cut(s) 1019
NcoI CCATGG 1 cut(s) 18
NdeII GATC 2 cut(s) 889, 951
NlaIII CATG 9 cut(s) 22, 57, 323, 407, 511, 728, 835, 937, 1027
NlaIV GGNNCC 2 cut(s) 760, 986
NmuCI GTSAC 5 cut(s) 98, 653, 709, 827, 1166
NsiI ATGCAT 1 cut(s) 1048
NspI RCATGY 1 cut(s) 937
PceI AGGCCT 1 cut(s) 611
PciSI GCTCTTC 1 cut(s) 794
PdmI GAANNNNTTC 2 cut(s) 67, 996
PfeI GAWTC 2 cut(s) 11, 203
PflMI CCANNNNNTGG 1 cut(s) 59
PfoI TCCNGGA 1 cut(s) 492
PkrI GCNGC 4 cut(s) 223, 226, 678, 792
PleI GAGTC 1 cut(s) 532
PpsI GAGTC 1 cut(s) 532
PpuMI RGGWCCY 1 cut(s) 490
PshAI GACNNNNGTC 1 cut(s) 294
Psp124BI GAGCTC 1 cut(s) 882
Psp5II RGGWCCY 1 cut(s) 490
Psp6I CCWGG 7 cut(s) 88, 129, 266, 492, 657, 941, 1214
PspFI CCCAGC 1 cut(s) 217
PspGI CCWGG 7 cut(s) 88, 129, 266, 492, 657, 941, 1214
PspN4I GGNNCC 2 cut(s) 760, 986
PspOMI GGGCCC 1 cut(s) 984
PspPI GGNCC 6 cut(s) 244, 254, 490, 718, 984, 985
PspPPI RGGWCCY 1 cut(s) 490
PstNI CAGNNNCTG 3 cut(s) 224, 227, 493
PsuI RGATCY 1 cut(s) 889
PvuII CAGCTG 1 cut(s) 224
RsaI GTAC 2 cut(s) 760, 1115
RsaNI GTAC 2 cut(s) 759, 1114
SacI GAGCTC 1 cut(s) 882
SapI GCTCTTC 1 cut(s) 794
SaqAI TTAA 6 cut(s) 29, 545, 624, 780, 1179, 1249
SatI GCNGC 4 cut(s) 222, 225, 677, 791
Sau3AI GATC 2 cut(s) 889, 951
Sau96I GGNCC 6 cut(s) 244, 254, 490, 718, 984, 985
SchI GAGTC 1 cut(s) 533
ScrFI CCNGG 8 cut(s) 90, 131, 268, 494, 659, 943, 1019, 1216
SduI GDGCHC 3 cut(s) 882, 988, 1040
SfaNI GCATC 5 cut(s) 160, 361, 625, 1055, 1063
SinI GGWCC 2 cut(s) 244, 490
SmlI CTYRAG 3 cut(s) 28, 46, 881
SmoI CTYRAG 3 cut(s) 28, 46, 881
SseBI AGGCCT 1 cut(s) 611
SsiI CCGC 2 cut(s) 294, 1202
SspMI CTAG 2 cut(s) 504, 732
SstI GAGCTC 1 cut(s) 882
StuI AGGCCT 1 cut(s) 611
StyD4I CCNGG 8 cut(s) 88, 129, 266, 492, 657, 941, 1017, 1214
StyI CCWWGG 1 cut(s) 18
TaaI ACNGT 1 cut(s) 1166
TaqI TCGA 1 cut(s) 471
TatI WGTACW 1 cut(s) 1113
TfiI GAWTC 2 cut(s) 11, 203
Tru1I TTAA 6 cut(s) 29, 545, 624, 780, 1179, 1249
Tru9I TTAA 6 cut(s) 29, 545, 624, 780, 1179, 1249
TscAI CASTG 1 cut(s) 1109
TseFI GTSAC 5 cut(s) 98, 653, 709, 827, 1166
TseI GCWGC 4 cut(s) 221, 224, 676, 790
Tsp45I GTSAC 5 cut(s) 98, 653, 709, 827, 1166
TspDTI ATGAA 5 cut(s) 216, 405, 524, 713, 918
TspRI CASTG 1 cut(s) 1109
Van91I CCANNNNNTGG 1 cut(s) 59
Vha464I CTTAAG 1 cut(s) 28
VpaK11BI GGWCC 2 cut(s) 244, 490
XagI CCTNNNNNAGG 2 cut(s) 662, 704
XceI RCATGY 1 cut(s) 937
XmnI GAANNNNTTC 2 cut(s) 67, 996
XspI CTAG 2 cut(s) 504, 732
Zsp2I ATGCAT 1 cut(s) 1048
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.